prot_H-paniculata_contig17271.4048.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17271.4048.1
Unique Nameprot_H-paniculata_contig17271.4048.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length214
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17271.4048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 181..213
e-value: 0.0018
score: 16.3
coord: 95..123
e-value: 3.8E-6
score: 24.7
coord: 132..160
e-value: 7.9E-8
score: 30.0
coord: 61..94
e-value: 3.1E-6
score: 25.0
coord: 25..58
e-value: 2.6E-9
score: 34.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 181..206
e-value: 0.02
score: 15.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 80..143
e-value: 4.9E-8
score: 32.9
coord: 10..70
e-value: 5.3E-11
score: 42.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 23..57
score: 11.904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 8.934
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..22
score: 5.755
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 58..92
score: 10.084
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..124
e-value: 1.9E-34
score: 121.6
coord: 125..213
e-value: 4.7E-17
score: 64.5
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17271contigH-paniculata_contig17271:123..5284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17271.4048.1mRNA_H-paniculata_contig17271.4048.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17271 123..5284 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17271.4048.1 ID=prot_H-paniculata_contig17271.4048.1|Name=mRNA_H-paniculata_contig17271.4048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
QVGEQSKALSLLTEMRRIGLQRSGVSYLTAISACSRVGDWERALSLLDEM
RTDGIEPDLKCYSAAISACGHGMQWNEAVSLLTDMRARGIIPNEFCYNAA
ISACGKSSRWKHAIELMKEMESGKLGVWPDMITYNAVIDACGKSGRWRES
LEILQDMRARADEPSVRGSDAPPPPIPDATTYGTAITACSKGKQWKIALM
LLEDMQAQVREPN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf