prot_H-paniculata_contig1725.4038.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1725.4038.1
Unique Nameprot_H-paniculata_contig1725.4038.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length269
Homology
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 4.630e-49
Identity = 114/230 (49.57%), Postives = 144/230 (62.61%), Query Frame = 0
Query:   28 VKDVLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSERG-RRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTPSGRGVHIT---ADANGLNPVE-TCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENSNE 252
            V +VL DAMCGLCSE+LLDAAVLPCSH FCRLCW EH ++  + CPVCLRK HSSER  RRCSNLDL+ITS+I KLAG E R RW  RQ++A+ R      K        G  +   +P   K G+ P+ A   S  +P+ RGV  T   ++ NG+ P E +   + +  GG T R    G +GG +    +++ R       CEGC+EEGHEFR+CPHRSDSA+E S E
Sbjct:  219 VMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAEHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPEERARWTARQEEAQKRAAVAARKARQ----QGSNNGPAAPGTRKAGQVPSSAA-ESKPSPA-RGVRSTGSKSNNNGVFPPERSSRGDGNQGGGSTKRLAPSGIAGGGANSSVAAAAR-------CEGCDEEGHEFRECPHRSDSALEGSEE 435          
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.250e-44
Identity = 111/238 (46.64%), Postives = 142/238 (59.66%), Query Frame = 0
Query:   18 GRGKNPASNTVKDVLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSERG-RRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTPSGRGVHIT---ADANGLNPVE-TCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENS 250
            G G+ P+   V +VL DAMCGLCSE+LLDAAVLPCSH FCRLCW  H ++  + CPVCLRK HSSER  RRCSNLDL+ITS+I KLAG + R RW  RQ++A  R      K        G  +   +    K G+ P+ A   S  +P+ RGV  T   ++ NG+ P E T   + +  G    R    GT+ G      ++ +R       CEGC+EEGHEFR+CPHRSDSA++ S
Sbjct:  221 GGGETPSM--VMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAGHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPQERARWTARQEEALKRATAAARKARQ----QGSNNGPAAAGTRKAGQVPSSAA-ESKPSPA-RGVRSTGSKSNNNGVFPPEGTSRGDGNLGGTGIKRLAPSGTADGNGNSTVAAPER-------CEGCDEEGHEFRECPHRSDSALDES 443          
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: A0A836C894_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C894_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.330e-20
Identity = 85/238 (35.71%), Postives = 108/238 (45.38%), Query Frame = 0
Query:   31 VLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSER-GRRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTP---SGRGVHITADANGLNPV----------ETCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENSNEES 254
            +L +  C LC E LLDAA+LPCSH  C  CW  H     + CPVC RKFHS+ER  RR  +LD VI  L+ +L G E + R  +R Q A                                  SP      S  +P   SGRG    ADA  L+PV          +  +   +     T ++ A   S G  G+    SQ +E    +CEGCNE GH+   CPHRSD A + S+EES
Sbjct:  343 LLAEVACCLCEETLLDAALLPCSHAVCGACWTAHCDAHSTACPVCTRKFHSAERRARRSMHLDNVIALLVAELGGAEAQRRMEERAQAAXXXXXXXXXXXXXXXXXXXX--------XXXXPTSPAXXXXXSRISPPGSSGRG----ADAGKLSPVGSGRKSLSQQQQRLLPVAPLNAFTRKRAALARSAGAGGD----SQPRE---AVCEGCNEPGHDMSCCPHRSDDAFKESDEES 561          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7R3_ECTSI4.630e-4949.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYS2_9PHAE7.250e-4446.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C894_9STRA1.330e-2035.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..75
e-value: 0.0065
score: 25.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 37..75
score: 10.881
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 11..133
e-value: 1.6E-14
score: 55.6
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 34..80
e-value: 1.2E-6
score: 28.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 25..81
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 209..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1725contigH-paniculata_contig1725:1534..3287 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1725.4038.1mRNA_H-paniculata_contig1725.4038.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1725 956..4852 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1725.4038.1 ID=prot_H-paniculata_contig1725.4038.1|Name=mRNA_H-paniculata_contig1725.4038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MSNNSICVLNNGSGARKGRGKNPASNTVKDVLGDAMCGLCSEVLLDAAVL
PCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSERGRRCSNLDLVITSLIQ
KLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKN
GRSPNLATPRSHDTPSGRGVHITADANGLNPVETCIFERSANGGVTSRQN
ARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENS
NEESEEDDDGEDEEYEDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR036875Znf_CCHC_sf