mRNA_H-paniculata_contig17246.4036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17246.4036.1
Unique NamemRNA_H-paniculata_contig17246.4036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17246.4036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17246contigH-paniculata_contig17246:2196..4136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17246.4036.1prot_H-paniculata_contig17246.4036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17246 2225..4112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929360.5264633-UTR-H-paniculata_contig17246:2195..22241622929360.5264633-UTR-H-paniculata_contig17246:2195..2224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17246 2196..2224 +
1691480830.0145068-UTR-H-paniculata_contig17246:2195..22241691480830.0145068-UTR-H-paniculata_contig17246:2195..2224Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17246 2196..2224 +
1622929360.5745146-UTR-H-paniculata_contig17246:4112..41361622929360.5745146-UTR-H-paniculata_contig17246:4112..4136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17246 4113..4136 +
1691480830.0427258-UTR-H-paniculata_contig17246:4112..41361691480830.0427258-UTR-H-paniculata_contig17246:4112..4136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17246 4113..4136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929360.5448897-CDS-H-paniculata_contig17246:2224..22641622929360.5448897-CDS-H-paniculata_contig17246:2224..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17246 2225..2264 +
1691480830.024331-CDS-H-paniculata_contig17246:2224..22641691480830.024331-CDS-H-paniculata_contig17246:2224..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17246 2225..2264 +
1622929360.5614667-CDS-H-paniculata_contig17246:3882..41121622929360.5614667-CDS-H-paniculata_contig17246:3882..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17246 3883..4112 +
1691480830.033498-CDS-H-paniculata_contig17246:3882..41121691480830.033498-CDS-H-paniculata_contig17246:3882..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17246 3883..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17246.4036.1

>prot_H-paniculata_contig17246.4036.1 ID=prot_H-paniculata_contig17246.4036.1|Name=mRNA_H-paniculata_contig17246.4036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MKMRHKFLDGVRAGTRTATVSGGTIDSWSRRQREVGTSSEWTHCLDTTKK
QRPNYYIIIVDPSTVGYMQVSKAKQVSRMFLMCADTKGL*
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mRNA from alignment at H-paniculata_contig17246:2196..4136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17246.4036.1 ID=mRNA_H-paniculata_contig17246.4036.1|Name=mRNA_H-paniculata_contig17246.4036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1941bp|location=Sequence derived from alignment at H-paniculata_contig17246:2196..4136+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTTCGTGCGTCTCCACGTGCATACAGATGAAGATGCGGCACAAGTTC
CTGGATGGTGTGCGCGCCGGTAAGGAGTAAAGCATTTCCGTGATAATTTT
CATGTTGACGTTGAATATGTTGTCAGTTGCCCTGTTGTATGTTGCAATCC
ACTGATTGGTCAAGACGGTACGACATGGCCGGCTGCTGTGCCAGCCTGCT
GACTTCAATGGAATATTATCCTTCGGGAAAAATCTCCTACATTTTACACT
CACATACGTATAGGGCCCACGCGGTGCAATAGTACAGTCAGTCAGTCCCT
TGTCTACTACAGAATGGATATCATGTACTGCTGACCATGACCTCATTTGC
TGTACCTGCTATACGCACATATCTGCACGATGCCGTGGCACACATAATAT
AATTTGATTAAAAAGGAGGTGGCCAAACCCCCGCGTTGTCTTTGTTCTTT
CCTCTTTGGGTCGGCCCCACGACCACGGCCACGAAGAGCATGAACTATTA
CAGGAAACAGTTGACCTGTGTATGTCAAATATTTTCTCGTTGGATCAGAC
GATATTCGTGCAGTAGAGAATCTAGCTTATGCTCACGTGTGAAACAGCCC
ACCAGCTATGGTCGCTCCTGGCGCTCTAGTCAAGGCTGCGCTGCCTTCCC
TAAACACAAATAGCCCATCCATCACCACCATCACCAGCACCGTCTGAACC
AGCAATCTCCGCATCGTTGCCGAAAATTTGTTCCCTCCAGTCTTTGGTCT
CGCCCCTCTCTGCCTTGGTAGTCCTTCTATCCCTCGCTTCCTTCCATACG
GATTGTGGGCGTTTGGTATTTCGGTTCGAAGTGGATTTCGCGGATGGGCA
TTAAGATGCTGGCGACTTGTTATCCCCTCTGCCCTCTGCACTATACCCTC
TACTCTATGCCCTATGCCCTACGCCCTATGCCCTATGCCCTACGCCCTAT
GCCCTACGCCCTATGCCCTATGCCCTGTGCAATATACTTTATGCACATGA
ATCGAGGGTATTGTCACTGCTGTCAAACCGCGAACGAAAGTATTTGGGAT
ATATGTCAAATACAGCTACACATTCGGCTGCGGTGCTCCGGTAGGAATCC
CTAGGGGTGGCAGGTTGAATCCCGCTGGCTAACTATAATCGGTCGCAAAA
TCTGGACCCCTTGAATCTGGACCAACATTTGTGTATTTATGGCCGATTAA
CAGCTGTACAGTACAGTGACCCAGAGTAAACCTGTGGGTTATTAGAACTT
CGGAAACGAGCCGAAATGCAGGAGAATTTGTTCCGGTTTAAGAATGCATG
GTGACCTCGCCTAAATGGCTTCACACACTTAGGGAACAAACAGCTCACCT
GGTTTTGGCAGGCTGTGATTGAGAATGGGTATTCATGTTATTGACAATTA
TCGTGCGCTCGGTAATTAGAATGGCAGCAGGACAGTGGGTCCACAACAGT
AAAATTACCATTTACGTATCCTCGTTTTGAGAGTATTTACTTGATTGAAA
AACATATTTCATTGTGTTGCGCCTGGTCATTGAAATGGTGGGCCGAAGTG
AGCTCCACTGAAACACAAGTGACTGAACAGGCACCAGCGGAGTCTCCGCG
TAGGAGATTCTCTCTGCCTAGCATACACACTAGGTACGCAATCACACTGA
CTCACGTTACATATCCCCTTCTCCCCACATACGATAGGGACGCGGACAGC
AACAGTTTCGGGCGGCACTATTGATTCCTGGAGCAGAAGACAACGAGAAG
TCGGCACCTCTAGCGAATGGACTCACTGTTTGGACACCACAAAAAAACAG
AGGCCGAACTACTATATTATAATAGTTGATCCAAGTACGGTCGGCTACAT
GCAAGTGAGCAAGGCCAAACAGGTTTCCAGGATGTTTCTCATGTGTGCAG
ACACGAAGGGGCTATAATATCTTTGAATGCAGATGTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17246:2196..4136+

>mRNA_H-paniculata_contig17246.4036.1 ID=mRNA_H-paniculata_contig17246.4036.1|Name=mRNA_H-paniculata_contig17246.4036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig17246:2196..4136+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATGCGGCACAAGTTCCTGGATGGTGTGCGCGCCGATGAAGATGC
GGCACAAGTTCCTGGATGGTGTGCGCGCCGGGACGCGGACAGCAACAGTT
TCGGGCGGCACTATTGATTCCTGGAGCAGAAGACAACGAGAAGTCGGCAC
CTCTAGCGAATGGACTCACTGTTTGGACACCACAAAAAAACAGAGGCCGA
ACTACTATATTATAATAGTTGATCCAAGTACGGTCGGCTACATGCAAGTG
AGCAAGGCCAAACAGGTTTCCAGGATGTTTCTCATGTGTGCAGACACGAA
GGGGCTATAAGGACGCGGACAGCAACAGTTTCGGGCGGCACTATTGATTC
CTGGAGCAGAAGACAACGAGAAGTCGGCACCTCTAGCGAATGGACTCACT
GTTTGGACACCACAAAAAAACAGAGGCCGAACTACTATATTATAATAGTT
GATCCAAGTACGGTCGGCTACATGCAAGTGAGCAAGGCCAAACAGGTTTC
CAGGATGTTTCTCATGTGTGCAGACACGAAGGGGCTATAA
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