mRNA_H-paniculata_contig1722.4023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1722.4023.1
Unique NamemRNA_H-paniculata_contig1722.4023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1722.4023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1722contigH-paniculata_contig1722:5537..6023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size327
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.1428795-UTR-H-paniculata_contig1722:5536..56961622929358.1428795-UTR-H-paniculata_contig1722:5536..5696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1722 5537..5696 +
1691480829.1073215-UTR-H-paniculata_contig1722:5536..56961691480829.1073215-UTR-H-paniculata_contig1722:5536..5696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1722 5537..5696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.1546772-CDS-H-paniculata_contig1722:5696..60231622929358.1546772-CDS-H-paniculata_contig1722:5696..6023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1722 5697..6023 +
1691480829.122063-CDS-H-paniculata_contig1722:5696..60231691480829.122063-CDS-H-paniculata_contig1722:5696..6023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1722 5697..6023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1722.4023.1prot_H-paniculata_contig1722.4023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1722 5697..6023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1722.4023.1

>prot_H-paniculata_contig1722.4023.1 ID=prot_H-paniculata_contig1722.4023.1|Name=mRNA_H-paniculata_contig1722.4023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MLAGYLTFSGIFTRLETLTGITFLFTSSSIRPENLDAMYVHSDNNILTSC
AHPVSWCQNFRFVLHHELPQLSAFHRVWFRYPWPRDLVSSSVMPVASSLK
RSVAIIVP*
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mRNA from alignment at H-paniculata_contig1722:5537..6023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1722.4023.1 ID=mRNA_H-paniculata_contig1722.4023.1|Name=mRNA_H-paniculata_contig1722.4023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at H-paniculata_contig1722:5537..6023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTCCTGCTTTGCCCACGCCATAAGCAACATTGAACCTGAAAGCGGAG
TAGTGATACGACAAATTTATTACGCAGCCTCTCGTGGTCGCAAAAGCAGC
GGGGCAGAGCGCTGCTGGTGGGACCCCATCATAACACATGGAGGGAAATA
TAATTAGGCAATGCTTGCAGGCTACCTTACTTTTTCTGGCATTTTCACGA
GACTTGAGACGTTGACTGGAATTACATTTCTTTTTACTTCTTCTTCAATT
AGACCTGAGAACCTCGACGCCATGTACGTACATTCCGACAACAACATTCT
GACAAGCTGTGCACACCCTGTTTCATGGTGCCAAAATTTCAGATTTGTGC
TGCACCACGAGTTGCCCCAACTGAGCGCGTTTCACAGAGTATGGTTCAGA
TATCCATGGCCGAGAGACCTCGTTTCTTCTTCTGTCATGCCTGTCGCAAG
CAGTCTCAAACGCTCGGTAGCCATAATCGTACCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1722:5537..6023+

>mRNA_H-paniculata_contig1722.4023.1 ID=mRNA_H-paniculata_contig1722.4023.1|Name=mRNA_H-paniculata_contig1722.4023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig1722:5537..6023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGCAGGCTACCTTACTTTTTCTGGCATTTTCACGAGACTTGAGAC
GTTGACTGGAATTACATTTCTTTTTACTTCTTCTTCAATTAGACCTGAGA
ACCTCGACGCCATGTACGTACATTCCGACAACAACATTCTGACAAGCTGT
GCACACCCTGTTTCATGGTGCCAAAATTTCAGATTTGTGCTGCACCACGA
GTTGCCCCAACTGAGCGCGTTTCACAGAGTATGGTTCAGATATCCATGGC
CGAGAGACCTCGTTTCTTCTTCTGTCATGCCTGTCGCAAGCAGTCTCAAA
CGCTCGGTAGCCATAATCGTACCGTAGATGCTTGCAGGCTACCTTACTTT
TTCTGGCATTTTCACGAGACTTGAGACGTTGACTGGAATTACATTTCTTT
TTACTTCTTCTTCAATTAGACCTGAGAACCTCGACGCCATGTACGTACAT
TCCGACAACAACATTCTGACAAGCTGTGCACACCCTGTTTCATGGTGCCA
AAATTTCAGATTTGTGCTGCACCACGAGTTGCCCCAACTGAGCGCGTTTC
ACAGAGTATGGTTCAGATATCCATGGCCGAGAGACCTCGTTTCTTCTTCT
GTCATGCCTGTCGCAAGCAGTCTCAAACGCTCGGTAGCCATAATCGTACC
GTAG
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