prot_H-paniculata_contig17200.4013.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17200.4013.1
Unique Nameprot_H-paniculata_contig17200.4013.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length67
Homology
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.140e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0 
Query:    1 MLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQ 56
            MLKGYGR+GDLG +E+MFE+M  D+DQ+PDVVALNS+LDACVRN D+RRAVEILEQ
Sbjct:  645 MLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQ 700
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 6.170e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0 
Query:    1 MLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQ 56
            MLKGYGR+GDLG +E+MFE+M  D+DQ+PDVVALNS+LDACVRN D+RRAVEILEQ
Sbjct: 1113 MLKGYGRIGDLGAAELMFEVMAADRDQRPDVVALNSILDACVRNGDLRRAVEILEQ 1168
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BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Match: A0A835YV31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV31_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.530e-8
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:    1 MLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRAVEILEQVHMYIGV 63
            M+KGYGRVG+L  +   F  +  D    PDVVALNS LDACVR  D+  A+  L+     + V
Sbjct:  524 MIKGYGRVGNLEAARAAFGALLRDPRACPDVVALNSYLDACVRCGDLPAALSTLDAAAQNLAV 586
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17200.4013.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBV9_ECTSI6.140e-2278.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7F1_9PHAE6.170e-2278.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV31_9STRA5.530e-846.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 33..57
e-value: 4.5E-4
score: 18.2
coord: 1..30
e-value: 0.0026
score: 15.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..22
e-value: 0.25
score: 11.7
coord: 32..56
e-value: 5.8E-4
score: 19.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..63
e-value: 2.2E-10
score: 42.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17200contigH-paniculata_contig17200:4494..4694 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17200.4013.1mRNA_H-paniculata_contig17200.4013.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17200 4476..4694 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17200.4013.1 ID=prot_H-paniculata_contig17200.4013.1|Name=mRNA_H-paniculata_contig17200.4013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLKGYGRVGDLGGSEVMFELMCHDKDQKPDVVALNSLLDACVRNNDMRRA
VEILEQVHMYIGVALR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf