mRNA_H-paniculata_contig1718.4003.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1718.4003.1
Unique NamemRNA_H-paniculata_contig1718.4003.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1718.4003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1718contigH-paniculata_contig1718:9778..14321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase sigma factor, region 2
Ec32 orthologEc-05_002860.1
Exons2
Model size1186
Cds size987
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1718.4003.1prot_H-paniculata_contig1718.4003.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1718 9975..14321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.0327418-UTR-H-paniculata_contig1718:9777..99741622929356.0327418-UTR-H-paniculata_contig1718:9777..9974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1718 9778..9974 +
1691480828.2833033-UTR-H-paniculata_contig1718:9777..99741691480828.2833033-UTR-H-paniculata_contig1718:9777..9974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1718 9778..9974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.0662932-CDS-H-paniculata_contig1718:9974..108141622929356.0662932-CDS-H-paniculata_contig1718:9974..10814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1718 9975..10814 +
1691480828.2928061-CDS-H-paniculata_contig1718:9974..108141691480828.2928061-CDS-H-paniculata_contig1718:9974..10814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1718 9975..10814 +
1622929356.0841477-CDS-H-paniculata_contig1718:14174..143211622929356.0841477-CDS-H-paniculata_contig1718:14174..14321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1718 14175..14321 +
1691480828.3013268-CDS-H-paniculata_contig1718:14174..143211691480828.3013268-CDS-H-paniculata_contig1718:14174..14321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1718 14175..14321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1718.4003.1

>prot_H-paniculata_contig1718.4003.1 ID=prot_H-paniculata_contig1718.4003.1|Name=mRNA_H-paniculata_contig1718.4003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=329bp
MRQPAGSTTCAAQGPISDTALSTTQTCKPPSRPIRSHRCDTVYRSPHVSP
FFQQQSSSAGRWVRACTRSSAGTTRSFWRTSNCAAIVLGLLWVGSLRWTR
PAVVGVSAAISRSRSNTCSLKRYRTAARHGCCDSSPLTAKRETTTAAASR
CEHPVTRRAPLSSTVRNGRDCYSLASPARHRRRTVRVTGELRDEITVAVV
GEGEGGGATKVAGTVGGARAGGMRRRNSSRAKNSSALGLAYLPPGDDQED
GEDTSKEAMGRTLGVDARYTTTTPMQTLRNSVMDFPRLTRDEEVALGEDV
QRWQQLERVRGRVVVAAGGSEEMRLDAWA
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mRNA from alignment at H-paniculata_contig1718:9778..14321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1718.4003.1 ID=mRNA_H-paniculata_contig1718.4003.1|Name=mRNA_H-paniculata_contig1718.4003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4544bp|location=Sequence derived from alignment at H-paniculata_contig1718:9778..14321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAAGACAGAAGAATATGGTGCACTAAACAAGGGATGGAACCGGGCTA
CGTTTAAACGAGGACATCACTCGGCCGAGCGGTGGCTACAGAATAATAAA
GTGCGCTCTCTCTGGCAAAGCTGCCCCAGCTATCCTCGGCCACAAGAGTA
CTAATAAACCCTTGATCTTGGTTTTCCATACGAAAAGCGTTACACAAATG
AGGCAGCCAGCTGGTTCGACGACATGCGCTGCCCAAGGACCGATTTCGGA
CACAGCGCTGTCAACAACGCAAACCTGCAAACCGCCCTCACGTCCCATCA
GGAGTCACCGCTGCGACACTGTGTACCGATCACCACATGTCTCGCCCTTT
TTCCAGCAGCAAAGCTCATCAGCAGGTCGTTGGGTAAGAGCTTGTACCAG
GTCGTCAGCTGGCACGACAAGATCTTTCTGGAGAACGAGTAATTGCGCCG
CCATCGTATTGGGGTTATTATGGGTAGGATCGCTGCGATGGACACGCCCT
GCGGTGGTGGGTGTATCAGCTGCTATTAGCCGCAGCCGCAGTAATACATG
TTCCCTGAAGCGCTACCGCACTGCTGCCCGCCACGGATGCTGTGACTCAT
CACCCTTGACAGCCAAGCGAGAGACAACAACAGCAGCGGCTTCTCGCTGC
GAACATCCGGTGACACGACGTGCTCCGTTGTCATCCACAGTGCGAAACGG
GCGTGATTGCTACTCATTAGCAAGCCCGGCACGCCATAGACGGCGGACCG
TTAGGGTCACAGGGGAGCTTCGGGACGAAATAACAGTGGCAGTAGTAGGG
GAAGGAGAAGGAGGAGGGGCAACAAAGGTTGCGGGGACTGTTGGGGGTGC
GAGGGCAGGAGGAATGCGAAGGAGGAACAGCAGTCGTGCAAAAAACAGTA
GCGCGTTGGGTCTAGCATACTTGCCTCCAGGAGATGATCAAGAAGACGGG
GAGGACACATCGAAAGAGGCTATGGGTAGAACCTTAGGTGTGGATGCAAG
GTATACAACTACGACACCAATGCAGACCCTGAGAAATGTGAGTATGTTTT
ATCCCCGTACTTTTTGAATTTGTGTTGTCATCAATTCAATCGCTCTACTA
TTGTCACTTGTACTCCTGCACCACTTTCTCGCCCAGAAGGAAGAAATCGA
CCACTTTGATTGAGGGCTAATTTGATCTGGGATATTTACTTGGATCAGGT
CGGCATGCACGATGTGATACAGAGGCTTTTGGGAAGCTTTTGCAAAGCTT
GTGGTGCGTGGTGCCCTCCGGTGCGATAATGTGCCCTATCGATGAGGTCT
TGGTTAGTTTCTGTCTGAGGATTAAATAGTAATAGTCGGGGGGGTTCTCC
GGGAGATGGATTACTGCTGACAGTACAATATAGTTGGACAGCAGGTTCGC
CCCACTTATTGTTCAATATTCGGTTATTGGCCTTGATCTCATTGCCGTGC
TTTCTGGGTGCTTCGGGGAAAGCTTAACTTTTTCGGCAGACAGCACGTGT
GTATATTAGGCCGCTTGCTTTATGCTGGGAAAAAATACCGTTTGGAAAAC
AGAAAGCGCTGTTAAATGCGAAGTGAGGTTCTTTGCGCCGTTCTTTTTTT
CGCCCCGCGGTTTTCGAGGCTCGCGTGCGAAATAGTCAATTCCTAACTTT
GCTGGCGACACCGCGACTCACAGATCGAGAATCGATGCGGATTCTTGCGC
CCAATGCACCTACCCACACACTAGCCTAGGAATCGTGCCGGCTGAGGAAT
GTGAGCGTGGCTTGTGGTTGTTGCTTTGACAATGCTGGTAGCGGGTGGCC
GTGGTCCAGTGTTTTTATCTATTTCGTTTTTGCCCATGGAGAAAATGTCC
CACGAACCGGGCAAAGGCGGGGCGAAAAAACGCGCAGAGTTTCATCATTT
CGCATCCAACGGCGGTGTTTTCAGGTGTGGGATTTTTTGCTCAGTGTAAG
GAGCGGGAAAAACCGACAAGCAGTGTGCATATTCCCCTTATTTCCGAAAA
AAAAAATACAGACCGACATCAGCTTCAGCAAGGTATCCTAGATTAAGAAC
GGGTACGAAGCAGGCGGCTTTTCGAGTGACTGAAAGCTGACACATGGGAC
GTCAAATGAGCACCCAGAATAGCGAACTCAGAGACGGAAGGGTTTAAAAA
CAAACAAAGAAAAATATGTACTTTCTGTTCCAACACTTTGTTGAAAACAC
TGCAAGATCGTGTGGCAGCTTTGAGTGTTGATCCAAATTTCGATTTTTGC
CGCAGGATTTTCAACACTGGCTGGTTCGGGTCTCTTCCTCTCGTAGCTGT
GGCCTTTTGTTGGACGGCGCCATATCATTTATTTGAATGGCTTACTACTA
CTCGTGCCGGGTACAATATACAGAACAAACGGGGGGAGAAACATTAAAGT
GAGCAAATATATATATATATATATAGAATGAATTTATGTGTACACAAAAT
AAACGATGAAAAAATCAAAAGAATTAACGAATAAAAAATGAACGAATAAT
AAAGTAACGTGAAATTCACAAATAACAAAATACATGGCTAGGCCCAAACC
AAACACAAAGGATAATCAATGGTCAAAGAGTTTCCCAGACACAAGGCGGG
TATCTACGTTCGAAGCAGATAGTACAGACTACAACTCGCCTCGTAGAGAG
ACAAATTCAGGCGGAATCTTTTGCTCAGTATACTGACACGCTATGGTGTG
AGTTGTGCGGAGCATATCTGGCGTAAGGCGTGCACCGTGGCCATCACGCT
GCCCACTTTGATGGCGGGTACCGGTTGAACCGGTATCAACGCCAGCCCAG
GATCGGTAGCAATAACACTACGGCTTACTCCTTGCGCCATCAGTTTTGAT
TATCCACTCTGGTGTGCTCACCGTGTGCGGCCTTACTGTTGCACTTGGTT
TCGCGGAATTGTTATTTGACTCTATAAAGAAATAACGCCATAAAGTTTTG
CTGTGTTGAACATATGTCAAAATCCAGTACTAGATAACTCTTGGTTGTGC
GACTGTGCCCTTTCTGTATTCTGGTTTTTCATTTTTCCTCACAAAAAGCA
ACGCCCACTATTACTCCGCGCTTGGGCTCGTTGCTCGGATGTCTTTTCCT
CCCCTCTTGCGCCGACATATGCCCTTTAGTTGTGTATGTTCGAATTTCGA
TTATTAACATATCTAGCCCAGACCTTTTGTACACCGGAAAGCCTTCTGAT
AACGCCGCGTCCGTTGTAACGCCCTGAGGCGTATCAAATCAGCTCCCAGA
GATCGATCGCCATGGGGCGGGGTATCGAAACCACAGATCGTGCAAAAAAA
CGCCCCGTGGTCGATCGTAACGCTCCGACGGGGTGTCAATGTGGGTGAAT
TTCGTGAGAATGCCCCGAGGCGATTAGAGTTTCCGCACAAAAGCACCTAT
GTACACCGGGAAATATTTATGCACATACGAGATTTCGTCATAGGAACGAT
ACTATCGGTAATGCAGGGCAATGGGAGTAGATTCAAGCTACTCCAGGTAC
ATAAGATTCTCTAGTTTTTGACCTGCTGCTCGCAAATGCTGTTGAGGAAG
GACATCGTCCGTTAGTGCCTGCCAGTCTTGTTGCTGAATCCCGCCTTGCT
GTCGGCCCCAGTGTACTTTGTGGCCTGGCGGAAAGCTGTTTTCATTATCT
CCCCGAGACCCTCAATTGACGTCATGTTTTCAAATAATGCCCCGTGGATG
GTCATAACGACCCCTGCAAAAATTATTCTCAAAATAACTCGCTGCCCCCG
AGGCATTATTAAGCTGAACAACTATCCAGCCCAGATTGATCGCAGGCTAA
ACAACACCAGGAAGAAGTGGATGACCTAGTCGGTGAGGGTCTGACGGCAA
GCGCGATAATACCACACATGATAGTCATGCATTTTTGACGTCATGATGCC
TGTGTTCACCATGCATCCAAGGATTCCTTACTTCTTCCAAAGTTCCTGAA
ACGTGTACGCAAATTCGATTTCAGCTATTCGACCCCCCTCCTCCACCCCC
TAGTTTATTCATTTTTTTGGATAAGTGTCATAATCCAGTAACTTCAGGAT
GCTGAACATACCCCCATTTTATTTTACGGCCGTTCCCATGTTTATATATT
TAACATTTTCATCCTTTCCTACGCTTGACTCGCTCTTTTGCTCTATCACG
ACTCTGTAGTATGTTTTCTAAACCATATTATCGTAGTGTTTACGCTGTCC
TACTGGTGAAACTGTTGTCCTCAGCGATTGGCGCATGCAGTGATGTCGCT
ACGTTGTCTCTCCCTCCCCCCTCCCTCTCCCTTGCGTTATGTCACCCACT
CACGCTTTCAATCGATCACACAACATACTGGTATGGTGATAACACTACCA
ACACCACTACCAACAATGACGACGATGACGCCGGATGTATCAATCAGAGC
GTGATGGACTTTCCACGCTTGACACGAGACGAGGAAGTTGCCCTGGGCGA
AGACGTGCAGCGATGGCAGCAGCTGGAGCGGGTGAGGGGGAGGGTAGTAG
TGGCGGCGGGGGGGTCTGAGGAAATGAGGTTGGACGCTTGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1718:9778..14321+

>mRNA_H-paniculata_contig1718.4003.1 ID=mRNA_H-paniculata_contig1718.4003.1|Name=mRNA_H-paniculata_contig1718.4003.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at H-paniculata_contig1718:9778..14321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCAGCCAGCTGGTTCGACGACATGCGCTGCCCAAGGACCGATTTC
GGACACAGCGCTGTCAACAACGCAAACCTGCAAACCGCCCTCACGTCCCA
TCAGGAGTCACCGCTGCGACACTGTGTACCGATCACCACATGTCTCGCCC
TTTTTCCAGCAGCAAAGCTCATCAGCAGGTCGTTGGGTAAGAGCTTGTAC
CAGGTCGTCAGCTGGCACGACAAGATCTTTCTGGAGAACGAGTAATTGCG
CCGCCATCGTATTGGGGTTATTATGGGTAGGATCGCTGCGATGGACACGC
CCTGCGGTGGTGGGTGTATCAGCTGCTATTAGCCGCAGCCGCAGTAATAC
ATGTTCCCTGAAGCGCTACCGCACTGCTGCCCGCCACGGATGCTGTGACT
CATCACCCTTGACAGCCAAGCGAGAGACAACAACAGCAGCGGCTTCTCGC
TGCGAACATCCGGTGACACGACGTGCTCCGTTGTCATCCACAGTGCGAAA
CGGGCGTGATTGCTACTCATTAGCAAGCCCGGCACGCCATAGACGGCGGA
CCGTTAGGGTCACAGGGGAGCTTCGGGACGAAATAACAGTGGCAGTAGTA
GGGGAAGGAGAAGGAGGAGGGGCAACAAAGGTTGCGGGGACTGTTGGGGG
TGCGAGGGCAGGAGGAATGCGAAGGAGGAACAGCAGTCGTGCAAAAAACA
GTAGCGCGTTGGGTCTAGCATACTTGCCTCCAGGAGATGATCAAGAAGAC
GGGGAGGACACATCGAAAGAGGCTATGGGTAGAACCTTAGGTGTGGATGC
AAGGTATACAACTACGACACCAATGCAGACCCTGAGAAATATGAGGCAGC
CAGCTGGTTCGACGACATGCGCTGCCCAAGGACCGATTTCGGACACAGCG
CTGTCAACAACGCAAACCTGCAAACCGCCCTCACGTCCCATCAGGAGTCA
CCGCTGCGACACTGTGTACCGATCACCACATGTCTCGCCCTTTTTCCAGC
AGCAAAGCTCATCAGCAGGTCGTTGGGTAAGAGCTTGTACCAGGTCGTCA
GCTGGCACGACAAGATCTTTCTGGAGAACGAGTAATTGCGCCGCCATCGT
ATTGGGGTTATTATGGGTAGGATCGCTGCGATGGACACGCCCTGCGGTGG
TGGGTGTATCAGCTGCTATTAGCCGCAGCCGCAGTAATACATGTTCCCTG
AAGCGCTACCGCACTGCTGCCCGCCACGGATGCTGTGACTCATCACCCTT
GACAGCCAAGCGAGAGACAACAACAGCAGCGGCTTCTCGCTGCGAACATC
CGGTGACACGACGTGCTCCGTTGTCATCCACAGTGCGAAACGGGCGTGAT
TGCTACTCATTAGCAAGCCCGGCACGCCATAGACGGCGGACCGTTAGGGT
CACAGGGGAGCTTCGGGACGAAATAACAGTGGCAGTAGTAGGGGAAGGAG
AAGGAGGAGGGGCAACAAAGGTTGCGGGGACTGTTGGGGGTGCGAGGGCA
GGAGGAATGCGAAGGAGGAACAGCAGTCGTGCAAAAAACAGTAGCGCGTT
GGGTCTAGCATACTTGCCTCCAGGAGATGATCAAGAAGACGGGGAGGACA
CATCGAAAGAGGCTATGGGTAGAACCTTAGGTGTGGATGCAAGGTATACA
ACTACGACACCAATGCAGACCCTGAGAAATAGCGTGATGGACTTTCCACG
CTTGACACGAGACGAGGAAGTTGCCCTGGGCGAAGACGTGCAGCGATGGC
AGCAGCTGGAGCGGGTGAGGGGGAGGGTAGTAGTGGCGGCGGGGGGGTCT
GAGGAAATGAGGTTGGACGCTTGGGCGAGCGTGATGGACTTTCCACGCTT
GACACGAGACGAGGAAGTTGCCCTGGGCGAAGACGTGCAGCGATGGCAGC
AGCTGGAGCGGGTGAGGGGGAGGGTAGTAGTGGCGGCGGGGGGGTCTGAG
GAAATGAGGTTGGACGCTTGGGCG
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