prot_H-paniculata_contig1714.3985.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1714.3985.1
Unique Nameprot_H-paniculata_contig1714.3985.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length444
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.220e-25
Identity = 83/202 (41.09%), Postives = 102/202 (50.50%), Query Frame = 0 
Query:  112 GGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVRLRA----PSAGYGGGGDVGSIFPSDSRGPSRAAQQVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKGERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAKSEARSEVEK 309
            GG  +A      S  +  ETRRLMSVPTIDIKLELQMRGVEHRDAFEK DLA+RLA+ R+      PS  +                   AA       A     A     + P+     + P+E             GA     +   +   VAR  RMGK  + RELN MGIAHSRLSD++VLARQYA+ + EAR +  +
Sbjct:  107 GGVGTATGRAAVSTDVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSCCGNNPSPSHDXXXXXXXXXXXXXXXLGGAAAHGPRESAHRSNKASTTTGNEPQAAAATAVPTEG-----------RGAASDGCSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARR 297
[Close]
BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.860e-24
Identity = 106/309 (34.30%), Postives = 139/309 (44.98%), Query Frame = 0 
Query:   18 SVSILGLLLATLQTILCSAFVV---PPTISIQKRPTAFEEQSKAVFDISSLQSGCGTRPSLLPPEPRAPRWM------FHPTLQYRQVSFTRMGTKVDASPLH--------GGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVRLRAPSAGYGGGGDVGSIFPSDSRGPSRAAQQVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKGERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAKSEARSEVEK 309
            +V +  L L TL+  LC +FV+   PP    +  P A    S A    +      G    LL P  R+PR           T     +    +G   D  P          GG  +A         +  ETRRLMS PTIDIKLELQMRGVEHRDAFEK DLA+RLA+ R+ +         D               A +  +G AA     ++   S+     + + P          E    GA     ++  +   VAR  RMGK  + RELN MGIAHSRLSD++VLARQYA+ + EAR +  +
Sbjct:    5 NVWVAWLALETLKAPLCGSFVLQQAPPPGRTKYEPAAGSRCSAAT-PRARCSCSRGLHDPLLRPLLRSPRASSSAIAPLSGTADDDTLGRDGVGKAGDKPPAASSGSSHETGGVGTATGEAAVGTDVATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSSCGNNPSPSPDXXXXXXXXXXXXXXXAGR-DFGGAAADGPRENAHRSNKASTMMGNEPQAAAATAVATEGR--GAAPDGGSNRAYARDVARGTRMGKAALARELNGMGIAHSRLSDLSVLARQYAARRQEAREDARR 309
[Close]
BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.780e-6
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0 
Query:  134 LMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVR 170
            +M++PTIDIKLELQMRG++HRDA EK +LA+RLA  R
Sbjct:   82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQAR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDP5_9PHAE4.220e-2541.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH23_ECTSI1.860e-2434.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CCS4_9STRA9.780e-670.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..444
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1714contigH-paniculata_contig1714:22823..24334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1714.3985.1mRNA_H-paniculata_contig1714.3985.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1714 22823..24590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1714.3985.1 ID=prot_H-paniculata_contig1714.3985.1|Name=mRNA_H-paniculata_contig1714.3985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=444bp
MFTGERFCRGCTMCRRLSVSILGLLLATLQTILCSAFVVPPTISIQKRPT
AFEEQSKAVFDISSLQSGCGTRPSLLPPEPRAPRWMFHPTLQYRQVSFTR
MGTKVDASPLHGGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRG
VEHRDAFEKLDLAKRLADVRLRAPSAGYGGGGDVGSIFPSDSRGPSRAAQ
QVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKG
ERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAK
SEARSEVEKEAGLFVIDKGLDQQLEATRLAALGKTELAARLRALGVDFSR
QASEAKLGVLLAKAGGEGAAAAATAVNPAKSASSSSSRDDGEDSYERTSG
RGKRSWGWERWNMDRQHEGTASVFPRSHGQDVRDEDEEEGEEEE
back to top