mRNA_H-paniculata_contig1714.3985.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1714.3985.1
Unique NamemRNA_H-paniculata_contig1714.3985.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 6.640e-25
Identity = 83/202 (41.09%), Postives = 102/202 (50.50%), Query Frame = 1 
Query:  427 GGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVRLRA----PSAGYGGGGDVGSIFPSDSRGPSRAAQQVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKGERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAKSEARSEVEK 1020
            GG  +A      S  +  ETRRLMSVPTIDIKLELQMRGVEHRDAFEK DLA+RLA+ R+      PS  +                   AA       A     A     + P+     + P+E             GA     +   +   VAR  RMGK  + RELN MGIAHSRLSD++VLARQYA+ + EAR +  +
Sbjct:  107 GGVGTATGRAAVSTDVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSCCGNNPSPSHDXXXXXXXXXXXXXXXLGGAAAHGPRESAHRSNKASTTTGNEPQAAAATAVPTEG-----------RGAASDGCSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARR 297
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BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.900e-24
Identity = 106/309 (34.30%), Postives = 139/309 (44.98%), Query Frame = 1 
Query:  145 SVSILGLLLATLQTILCSAFVV---PPTISIQKRPTAFEEQSKAVFDISSLQSGCGTRPSLLPPEPRAPRWM------FHPTLQYRQVSFTRMGTKVDASPLH--------GGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVRLRAPSAGYGGGGDVGSIFPSDSRGPSRAAQQVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKGERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAKSEARSEVEK 1020
            +V +  L L TL+  LC +FV+   PP    +  P A    S A    +      G    LL P  R+PR           T     +    +G   D  P          GG  +A         +  ETRRLMS PTIDIKLELQMRGVEHRDAFEK DLA+RLA+ R+ +         D               A +  +G AA     ++   S+     + + P          E    GA     ++  +   VAR  RMGK  + RELN MGIAHSRLSD++VLARQYA+ + EAR +  +
Sbjct:    5 NVWVAWLALETLKAPLCGSFVLQQAPPPGRTKYEPAAGSRCSAAT-PRARCSCSRGLHDPLLRPLLRSPRASSSAIAPLSGTADDDTLGRDGVGKAGDKPPAASSGSSHETGGVGTATGEAAVGTDVATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSSCGNNPSPSPDXXXXXXXXXXXXXXXAGR-DFGGAAADGPRENAHRSNKASTMMGNEPQAAAATAVATEGR--GAAPDGGSNRAYARDVARGTRMGKAALARELNGMGIAHSRLSDLSVLARQYAARRQEAREDARR 309
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BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-5
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  493 LMSVPTIDIKLELQMRGVEHRDAFEKLDLAKRLADVR 603
            +M++PTIDIKLELQMRG++HRDA EK +LA+RLA  R
Sbjct:   82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQAR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1714.3985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDP5_9PHAE6.640e-2541.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH23_ECTSI2.900e-2434.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CCS4_9STRA1.120e-570.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1714contigH-paniculata_contig1714:22823..24590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1427
Cds size1332
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1714.3985.1prot_H-paniculata_contig1714.3985.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1714 22823..24334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929353.781724-CDS-H-paniculata_contig1714:22822..240641622929353.781724-CDS-H-paniculata_contig1714:22822..24064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1714 22823..24064 -
1691480827.2076266-CDS-H-paniculata_contig1714:22822..240641691480827.2076266-CDS-H-paniculata_contig1714:22822..24064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1714 22823..24064 -
1622929353.8017306-CDS-H-paniculata_contig1714:24244..243341622929353.8017306-CDS-H-paniculata_contig1714:24244..24334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1714 24245..24334 -
1691480827.2175643-CDS-H-paniculata_contig1714:24244..243341691480827.2175643-CDS-H-paniculata_contig1714:24244..24334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1714 24245..24334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929353.8158443-UTR-H-paniculata_contig1714:24334..243851622929353.8158443-UTR-H-paniculata_contig1714:24334..24385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1714 24335..24385 -
1691480827.2284737-UTR-H-paniculata_contig1714:24334..243851691480827.2284737-UTR-H-paniculata_contig1714:24334..24385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1714 24335..24385 -
1622929353.8323066-UTR-H-paniculata_contig1714:24548..245901622929353.8323066-UTR-H-paniculata_contig1714:24548..24590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1714 24549..24590 -
1691480827.243981-UTR-H-paniculata_contig1714:24548..245901691480827.243981-UTR-H-paniculata_contig1714:24548..24590Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1714 24549..24590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1714.3985.1

>prot_H-paniculata_contig1714.3985.1 ID=prot_H-paniculata_contig1714.3985.1|Name=mRNA_H-paniculata_contig1714.3985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=444bp
MFTGERFCRGCTMCRRLSVSILGLLLATLQTILCSAFVVPPTISIQKRPT
AFEEQSKAVFDISSLQSGCGTRPSLLPPEPRAPRWMFHPTLQYRQVSFTR
MGTKVDASPLHGGNASANSAIDQSLSLEDETRRLMSVPTIDIKLELQMRG
VEHRDAFEKLDLAKRLADVRLRAPSAGYGGGGDVGSIFPSDSRGPSRAAQ
QVKYGVAAEVRTADDVRSSSPRWRRLWSRPSEPIPPVTQGEPHEEGAEKG
ERADEYHPHYVARAVRMGKPGVIRELNAMGIAHSRLSDMAVLARQYASAK
SEARSEVEKEAGLFVIDKGLDQQLEATRLAALGKTELAARLRALGVDFSR
QASEAKLGVLLAKAGGEGAAAAATAVNPAKSASSSSSRDDGEDSYERTSG
RGKRSWGWERWNMDRQHEGTASVFPRSHGQDVRDEDEEEGEEEE
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mRNA from alignment at H-paniculata_contig1714:22823..24590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1714.3985.1 ID=mRNA_H-paniculata_contig1714.3985.1|Name=mRNA_H-paniculata_contig1714.3985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1768bp|location=Sequence derived from alignment at H-paniculata_contig1714:22823..24590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTGCGGTGTAGGCGCCACCCCGGTTCGGCGGTGAACCAGGTAGGCAG
TGAGCAGTCATGCTCAGTACACGAGCTACCCTACCCATTCGGGCGTAGGT
CCGTGGAAGCACGCCTGATACGCATGGATACTACCCAAACCCATTTTACA
CGGTACTGTCCATTTTGAATCAAAATATGCGATACCCCTTGGAACATGTC
TGCAGCTGTGCTGCTGAGTGGGGTGCTGCGGTGTGGGTGTGGCATGGCAT
TGCGACATGTTTACTGGTGAACGCTTCTGCCGCGGCTGTACCATGTGTCG
TCGGCTGTCGGTCTCTATTCTCGGCTTACTGCTTGCCACACTGCAGGTAA
GCTGTCTGTCTGGTTCTCTCCATTGACTGAATGAGTTGTCCTCATAAAAC
ACTACTGTCGTGGACATGTGGTGCTTGTACTGACCGCGTTCGTGCCGTGC
TCGGTGTGTGTCACAACGCACCTTTTTCACTTGCTCATCTCGTGCGTCCC
CTTCTTTTTCACACAACCTACAGCAGACCATCTTGTGCTCTGCGTTCGTG
GTGCCACCTACCATTAGCATTCAGAAGAGACCAACAGCCTTCGAGGAGCA
ATCGAAGGCTGTGTTCGATATTAGCTCACTGCAATCAGGATGCGGTACCC
GACCATCGTTGCTGCCGCCCGAACCCCGCGCTCCGAGGTGGATGTTCCAC
CCTACGCTGCAGTACCGACAAGTCTCCTTCACGCGCATGGGCACCAAGGT
CGATGCTTCGCCACTCCATGGAGGCAATGCAAGTGCAAACTCCGCCATCG
ACCAAAGCCTTAGCCTCGAAGACGAGACGAGGCGGCTCATGTCCGTGCCC
ACTATAGACATCAAGCTGGAGCTCCAAATGCGGGGTGTGGAACATCGCGA
CGCGTTTGAGAAATTGGATCTGGCCAAGCGTCTTGCCGATGTTCGTCTTC
GCGCTCCCTCAGCAGGTTACGGTGGTGGTGGCGATGTCGGCAGCATATTT
CCGAGCGATAGTCGCGGTCCTTCACGAGCAGCGCAGCAGGTAAAATATGG
TGTTGCGGCTGAGGTCAGGACTGCGGACGATGTGCGTAGCTCCTCTCCTC
GATGGCGGAGGTTGTGGTCAAGGCCATCCGAACCTATACCGCCGGTTACT
CAAGGGGAACCACACGAGGAAGGCGCAGAGAAGGGCGAAAGAGCGGACGA
ATACCACCCACACTATGTTGCGCGAGCGGTGCGGATGGGAAAACCGGGTG
TCATCCGGGAGTTGAATGCAATGGGCATCGCGCATTCCCGCCTGTCGGAC
ATGGCCGTCTTGGCGCGCCAGTACGCTAGTGCGAAAAGTGAAGCCCGCTC
GGAGGTGGAAAAAGAAGCTGGCCTATTCGTCATCGATAAGGGCCTAGATC
AACAACTTGAGGCGACTAGGTTAGCGGCTCTAGGCAAGACTGAGCTCGCC
GCTCGTCTTCGGGCATTGGGGGTCGATTTTTCTCGACAAGCATCTGAAGC
CAAATTGGGCGTGCTTCTCGCGAAGGCTGGAGGGGAAGGCGCTGCTGCGG
CGGCGACAGCAGTGAATCCGGCAAAAAGTGCGTCGTCGTCGTCGTCCCGG
GATGATGGCGAAGATAGTTACGAGAGAACAAGCGGAAGGGGGAAGCGCAG
CTGGGGATGGGAGCGGTGGAATATGGACCGACAACACGAAGGTACGGCGT
CGGTGTTCCCTCGGAGCCACGGTCAAGACGTACGTGATGAAGACGAAGAA
GAGGGGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1714:22823..24590-

>mRNA_H-paniculata_contig1714.3985.1 ID=mRNA_H-paniculata_contig1714.3985.1|Name=mRNA_H-paniculata_contig1714.3985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2664bp|location=Sequence derived from alignment at H-paniculata_contig1714:22823..24590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTACTGGTGAACGCTTCTGCCGCGGCTGTACCATGTGTCGTCGGCT
GTCGGTCTCTATTCTCGGCTTACTGCTTGCCACACTGCAGATGTTTACTG
GTGAACGCTTCTGCCGCGGCTGTACCATGTGTCGTCGGCTGTCGGTCTCT
ATTCTCGGCTTACTGCTTGCCACACTGCAGACCATCTTGTGCTCTGCGTT
CGTGGTGCCACCTACCATTAGCATTCAGAAGAGACCAACAGCCTTCGAGG
AGCAATCGAAGGCTGTGTTCGATATTAGCTCACTGCAATCAGGATGCGGT
ACCCGACCATCGTTGCTGCCGCCCGAACCCCGCGCTCCGAGGTGGATGTT
CCACCCTACGCTGCAGTACCGACAAGTCTCCTTCACGCGCATGGGCACCA
AGGTCGATGCTTCGCCACTCCATGGAGGCAATGCAAGTGCAAACTCCGCC
ATCGACCAAAGCCTTAGCCTCGAAGACGAGACGAGGCGGCTCATGTCCGT
GCCCACTATAGACATCAAGCTGGAGCTCCAAATGCGGGGTGTGGAACATC
GCGACGCGTTTGAGAAATTGGATCTGGCCAAGCGTCTTGCCGATGTTCGT
CTTCGCGCTCCCTCAGCAGGTTACGGTGGTGGTGGCGATGTCGGCAGCAT
ATTTCCGAGCGATAGTCGCGGTCCTTCACGAGCAGCGCAGCAGGTAAAAT
ATGGTGTTGCGGCTGAGGTCAGGACTGCGGACGATGTGCGTAGCTCCTCT
CCTCGATGGCGGAGGTTGTGGTCAAGGCCATCCGAACCTATACCGCCGGT
TACTCAAGGGGAACCACACGAGGAAGGCGCAGAGAAGGGCGAAAGAGCGG
ACGAATACCACCCACACTATGTTGCGCGAGCGGTGCGGATGGGAAAACCG
GGTGTCATCCGGGAGTTGAATGCAATGGGCATCGCGCATTCCCGCCTGTC
GGACATGGCCGTCTTGGCGCGCCAGTACGCTAGTGCGAAAAGTGAAGCCC
GCTCGGAGGTGGAAAAAGAAGCTGGCCTATTCGTCATCGATAAGGGCCTA
GATCAACAACTTGAGGCGACTAGGTTAGCGGCTCTAGGCAAGACTGAGCT
CGCCGCTCGTCTTCGGGCATTGGGGGTCGATTTTTCTCGACAAGCATCTG
AAGCCAAATTGGGCGTGCTTCTCGCGAAGGCTGGAGGGGAAGGCGCTGCT
GCGGCGGCGACAGCAGTGAATCCGGCAAAAAGTGCGTCGTCGTCGTCGTC
CCGGGATGATGGCGAAGATAGTTACGAGAGAACAAGCGGAAGGGGGAAGC
GCAGCTGGGGATGGGAGCGGTGGAATATGGACCGACAACACGAAGGTACG
GCGTCGGTGTTCCCTCGGAGCCACGGTCAAGACGTACGTGATGAAGACGA
AGAAGAGGGGGAGGAGGAGGAGACCATCTTGTGCTCTGCGTTCGTGGTGC
CACCTACCATTAGCATTCAGAAGAGACCAACAGCCTTCGAGGAGCAATCG
AAGGCTGTGTTCGATATTAGCTCACTGCAATCAGGATGCGGTACCCGACC
ATCGTTGCTGCCGCCCGAACCCCGCGCTCCGAGGTGGATGTTCCACCCTA
CGCTGCAGTACCGACAAGTCTCCTTCACGCGCATGGGCACCAAGGTCGAT
GCTTCGCCACTCCATGGAGGCAATGCAAGTGCAAACTCCGCCATCGACCA
AAGCCTTAGCCTCGAAGACGAGACGAGGCGGCTCATGTCCGTGCCCACTA
TAGACATCAAGCTGGAGCTCCAAATGCGGGGTGTGGAACATCGCGACGCG
TTTGAGAAATTGGATCTGGCCAAGCGTCTTGCCGATGTTCGTCTTCGCGC
TCCCTCAGCAGGTTACGGTGGTGGTGGCGATGTCGGCAGCATATTTCCGA
GCGATAGTCGCGGTCCTTCACGAGCAGCGCAGCAGGTAAAATATGGTGTT
GCGGCTGAGGTCAGGACTGCGGACGATGTGCGTAGCTCCTCTCCTCGATG
GCGGAGGTTGTGGTCAAGGCCATCCGAACCTATACCGCCGGTTACTCAAG
GGGAACCACACGAGGAAGGCGCAGAGAAGGGCGAAAGAGCGGACGAATAC
CACCCACACTATGTTGCGCGAGCGGTGCGGATGGGAAAACCGGGTGTCAT
CCGGGAGTTGAATGCAATGGGCATCGCGCATTCCCGCCTGTCGGACATGG
CCGTCTTGGCGCGCCAGTACGCTAGTGCGAAAAGTGAAGCCCGCTCGGAG
GTGGAAAAAGAAGCTGGCCTATTCGTCATCGATAAGGGCCTAGATCAACA
ACTTGAGGCGACTAGGTTAGCGGCTCTAGGCAAGACTGAGCTCGCCGCTC
GTCTTCGGGCATTGGGGGTCGATTTTTCTCGACAAGCATCTGAAGCCAAA
TTGGGCGTGCTTCTCGCGAAGGCTGGAGGGGAAGGCGCTGCTGCGGCGGC
GACAGCAGTGAATCCGGCAAAAAGTGCGTCGTCGTCGTCGTCCCGGGATG
ATGGCGAAGATAGTTACGAGAGAACAAGCGGAAGGGGGAAGCGCAGCTGG
GGATGGGAGCGGTGGAATATGGACCGACAACACGAAGGTACGGCGTCGGT
GTTCCCTCGGAGCCACGGTCAAGACGTACGTGATGAAGACGAAGAAGAGG
GGGAGGAGGAGGAG
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