mRNA_H-paniculata_contig1710.3969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1710.3969.1
Unique NamemRNA_H-paniculata_contig1710.3969.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 2.330e-123
Identity = 187/232 (80.60%), Postives = 205/232 (88.36%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEPGNAEAGGGDAMI 968
            MPRS R QKVSLTKT KKGRELKQGIV++VRKCVDEYPS+YVFSF NLRSKLLKEVR+DFR+DSRFFMGKNKVM++ALGK+ +DEYQDNL+QVSK L+GQVGLLFT RP +EV  YF ALAVADHAPPGFVHDETI LPTGSLG WPVSMM+QFRKLGVVVEVE+GVLVNRKAI MCT GEPI+PEGAKLLALYD+KIA FT+SLLCRWS GEFE L E      G  DAM+
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAE------GTDDAMV 226
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.450e-75
Identity = 130/239 (54.39%), Postives = 165/239 (69.04%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEP--GNAEAGGGDAMIDDDEE 983
            MP+S R + VSLT T KKGR LKQ ++ D+R  +D +  ++VF + N+RS+L+K+VR+DFR DSRFFMGKN +M  ALG +VEDEY DNL+QVS+ +RGQ GLL T+R ++ V+ YF+ LAV + A  GF   ETI LP G    WPV MMDQ RKLG+ VEV+D  L  RK   MC KG+ +TPE AKLL L+DRKI+VF I L CRWS G+FE+   P  G   A    A   DD+E
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYAAPDAGAETAAAETAEAPDDDE 238
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: M4C3P0_HYAAE (Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3P0_HYAAE)

HSP 1 Score: 207 bits (527), Expect = 2.280e-60
Identity = 111/235 (47.23%), Postives = 160/235 (68.09%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEPGNAEAGGGDAMIDDD 977
            MP+S R++  +LT+  KKG ELK+ +V  +R  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM +ALG++ EDEY +NL ++SK + G  GLLFT++PRDEVV YF+ L+V+D+   GFV  +TI +P G L  +  SM++  R LG+ V++++GV++  +   +C  G+ +TPE AKLL  +D K+A F + +L  WS   +E+L    +A   G D M D+D
Sbjct:    1 MPKSKRQRTKTLTQANKKGNELKKNVVEAIRNAVDTYESAYVFSFQNMRTSHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEDEYAENLFRLSKDVSGNTGLLFTNKPRDEVVDYFAKLSVSDYPRAGFVATDTITIPEGPLPQFIGSMLESLRGLGLPVDLKNGVVMLSRNYTICKSGQTLTPEQAKLLVHFDHKLAEFKLVMLSVWSKDTYERLSAD-DAVTSGEDDMEDED 233
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK)

HSP 1 Score: 206 bits (524), Expect = 3.600e-60
Identity = 114/213 (53.52%), Postives = 142/213 (66.67%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGE 911
            MP+S R++KVSLTKT  KGR+ KQ +V  VR+ +DE+ ++Y F F N+RS   KE R D+R DSRFF+GKNK+M IALG+T EDEYQD L+ +SK L G VGLL TSRPRDEV  YFS  +  D A  G +  ET+ L  GSL  +P  MM + RKLG+ VEV D VL   +   +C  GEPI  E AKLL     K+A F ISL+ RWS  +
Sbjct:    1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADWR-DSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNVGLLMTSRPRDEVESYFSNFSKKDFAKAGAIAPETVTLERGSLN-FPAYMMSEIRKLGLTVEVRDAVLELMEDATICVAGEPIGVEAAKLLEHMQLKLATFQISLVSRWSEAD 211
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: A0A8K1CRH8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH8_PYTOL)

HSP 1 Score: 206 bits (525), Expect = 4.240e-60
Identity = 113/237 (47.68%), Postives = 159/237 (67.09%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEPGNAEAGGGDAMIDDDEE 983
            MPRS R++   LTK+ KKG ELKQ +V  +R+ VD Y S Y FSF N+R+   KEVR+DFR DSRFF+GKNKVM +ALG+T E+EY D+L +++  + G VGL FT+R R EV+ YF+ L+  D A  GFV  E + +P G L  +  S ++  R LG+ V+++ GV+V R+   +C +G+ +TPE A+LL  +DRK+A F ++ L  WS G FE+L E  N EAG     +D+DE+
Sbjct:    1 MPRSRRQRVKPLTKSEKKGSELKQRVVDSIREAVDTYESAYAFSFQNMRTNHFKEVRLDFR-DSRFFLGKNKVMKLALGRTKEEEYADDLFKLAADVNGSVGLFFTNRDRQEVIDYFNKLSFTDFARSGFVATEAVSVPEGPLPQFIGSQLESLRTLGLPVDLKKGVVVLRQDYTICKEGQTLTPEQARLLQHFDRKMATFKLTPLSVWSKGSFERLAE--NPEAG---MEVDEDED 231
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC)

HSP 1 Score: 206 bits (525), Expect = 5.450e-60
Identity = 117/224 (52.23%), Postives = 150/224 (66.96%), Query Frame = 3 
Query:  261 SLST-MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGS--LGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQL 923
            SLST MPRS R+QKVSLTKT  KG+E K G +  VR+ +D + S+YVFSF ++RS   K+VR+D+R DSRFFMGKNKVM  ALG   EDE++DNL+ +SK L GQVGLL T+R R+EV+ YF    V D A PG + D  + L      L  +P SM   FRKLG+ +E ++G LV  +A  +C KG+ ITPE AKL+   D  +  F I L+C W  GEFE+L
Sbjct:   17 SLSTSMPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDWR-DSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQVGLLATNRSREEVLTYFENFKVQDFAKPGVIADADVTLEPSKDPLHFFPTSMFQLFRKLGLNLETKNGKLVLLEAFPVCRKGKAITPEQAKLMTHLDLPLVDFRIRLVCCWRDGEFEEL 239
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM)

HSP 1 Score: 205 bits (522), Expect = 1.260e-59
Identity = 107/227 (47.14%), Postives = 155/227 (68.28%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLM-EPGNAEAG 950
            MP+S R++   LT+  KKG ELKQ +V  +R  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM +ALG++ E+EY +NL ++SK + G  GLLFT++P +EVV YF+ L+V+DH   GFV  ET+ +P G L  +  SM++  R LG+ V++++GV+V  +   +C  G+ +TPE AKLL  +D K+A F + +L  WS  +++++  E  NA  G
Sbjct:    1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIAAEDANATTG 226
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD)

HSP 1 Score: 201 bits (512), Expect = 3.550e-58
Identity = 108/237 (45.57%), Postives = 157/237 (66.24%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEPGNAEAGGGDAMIDDDEE 983
            MP+S R++  +LTK  KK  +LKQ +V  VR+ VD Y +++ FSF N+R+   KEVRMDFR DSRFF+GKNKVM +ALG+T  +EY DNL ++S+ L G VGLLFT +  DEV +YF+ L+  D A  GFV  ET+ +P G L  +  SM++  R LG+ V+++ G +V  +   +C +G+ +TPE  KLL  +DRK+A F + +L  WS GE+++L +         +A+ DDD+E
Sbjct:    1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFR-DSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLADASV------NAIEDDDDE 230
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BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.280e-58
Identity = 109/235 (46.38%), Postives = 159/235 (67.66%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSAGEFEQLMEPGNAEAGGGDAMIDDD 977
            MP+S R++  +LT+  KKG  LKQ +V  VR  VD Y S YVFSF N+R+   K+VRMDF KDSRFF+GKNKVM +ALG++ E+EY +NL ++SK + G  GLLFT++P +EV+ YFS L+V+D+   GFV  ET+ +P G L  +  SM++  R LG+ V+++ GV+V  +   +C  G+ +TPE AKLL  +DRK+A F + +L  WS  ++++L    +A   G D+  D+D
Sbjct:    1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDF-KDSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLASE-DATTTGDDSTEDED 233
[Close]
BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Match: A0A6G0X521_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X521_9STRA)

HSP 1 Score: 201 bits (512), Expect = 5.000e-58
Identity = 102/219 (46.58%), Postives = 152/219 (69.41%), Query Frame = 3 
Query:  273 MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRSKLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQVGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSMMDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAVFTISLLCRWSA-GEFEQLM 926
            MP+S R ++  LT+T KKG ELK+G+V  +R  +DEY ++YVFSF N+R+   K VR DF  +SRFF+GKNKVM +ALG+T E+EY DNL +++  + G VGLL T++  DEV  YF  L++ D+A  GFV  ET+ +P G    +  SM++  R+LG+ V+++ GV+V      +C +G+ +TPE AKLL  +D+K++ F + LL RWS+ G+FE+L+
Sbjct:    1 MPKSKRVRQKPLTQTNKKGAELKKGVVESIRNAIDEYKTVYVFSFENMRTNHFKVVRADF-SESRFFLGKNKVMKVALGRTPEEEYADNLYKLASDISGSVGLLMTNKSHDEVADYFKKLSIEDYAKSGFVSTETVTIPAGPQPQFVGSMVESLRQLGLPVDLKSGVIVLNNDHTICKEGQTLTPEQAKLLVHFDKKMSNFHVELLSRWSSDGKFERLV 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1710.3969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI2.330e-12380.60RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
A0A835Z2W2_9STRA1.450e-7554.39Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
M4C3P0_HYAAE2.280e-6047.23Ribosome assembly factor mrt4 n=1 Tax=Hyaloperonos... [more]
A0A6V1SP53_HETAK3.600e-6053.52Ribosome assembly factor mrt4 n=1 Tax=Heterosigma ... [more]
A0A8K1CRH8_PYTOL4.240e-6047.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I2CRG5_NANGC5.450e-6052.23Ribosome assembly factor mrt4 (Fragment) n=1 Tax=N... [more]
H3GA64_PHYRM1.260e-5947.14Ribosome assembly factor mrt4 n=24 Tax=Phytophthor... [more]
K3WRY3_GLOUD3.550e-5845.57Ribosome assembly factor mrt4 n=1 Tax=Globisporang... [more]
A0A3F2RLT2_9STRA4.280e-5846.38Ribosome assembly factor mrt4 n=1 Tax=Phytophthora... [more]
A0A6G0X521_9STRA5.000e-5846.58Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1710contigH-paniculata_contig1710:3284..8269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue2e-100
Seed eggNOG ortholog2880.D7G6X6
Preferred nameMRTO4
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0244@1,KOG0816@2759
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-01_011870.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons3
Model size1505
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1710.3969.1prot_H-paniculata_contig1710.3969.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1710 3556..7753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.9417512-UTR-H-paniculata_contig1710:3283..35551622929350.9417512-UTR-H-paniculata_contig1710:3283..3555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1710 3284..3555 +
1691480826.1474662-UTR-H-paniculata_contig1710:3283..35551691480826.1474662-UTR-H-paniculata_contig1710:3283..3555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1710 3284..3555 +
1622929351.1412902-UTR-H-paniculata_contig1710:7753..82691622929351.1412902-UTR-H-paniculata_contig1710:7753..8269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1710 7754..8269 +
1691480826.1850786-UTR-H-paniculata_contig1710:7753..82691691480826.1850786-UTR-H-paniculata_contig1710:7753..8269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1710 7754..8269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.953648-CDS-H-paniculata_contig1710:3555..38551622929350.953648-CDS-H-paniculata_contig1710:3555..3855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 3556..3855 +
1691480826.1574535-CDS-H-paniculata_contig1710:3555..38551691480826.1574535-CDS-H-paniculata_contig1710:3555..3855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 3556..3855 +
1622929351.051771-CDS-H-paniculata_contig1710:5762..60351622929351.051771-CDS-H-paniculata_contig1710:5762..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 5763..6035 +
1691480826.16509-CDS-H-paniculata_contig1710:5762..60351691480826.16509-CDS-H-paniculata_contig1710:5762..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 5763..6035 +
1622929351.1272588-CDS-H-paniculata_contig1710:7609..77531622929351.1272588-CDS-H-paniculata_contig1710:7609..7753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 7610..7753 +
1691480826.175683-CDS-H-paniculata_contig1710:7609..77531691480826.175683-CDS-H-paniculata_contig1710:7609..7753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1710 7610..7753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1710.3969.1

>prot_H-paniculata_contig1710.3969.1 ID=prot_H-paniculata_contig1710.3969.1|Name=mRNA_H-paniculata_contig1710.3969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MPRSAREQKVSLTKTVKKGRELKQGIVTDVRKCVDEYPSIYVFSFANLRS
KLLKEVRMDFRKDSRFFMGKNKVMMIALGKTVEDEYQDNLKQVSKCLRGQ
VGLLFTSRPRDEVVKYFSALAVADHAPPGFVHDETIVLPTGSLGTWPVSM
MDQFRKLGVVVEVEDGVLVNRKAIKMCTKGEPITPEGAKLLALYDRKIAV
FTISLLCRWSAGEFEQLMEPGNAEAGGGDAMIDDDEEG*
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mRNA from alignment at H-paniculata_contig1710:3284..8269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1710.3969.1 ID=mRNA_H-paniculata_contig1710.3969.1|Name=mRNA_H-paniculata_contig1710.3969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4986bp|location=Sequence derived from alignment at H-paniculata_contig1710:3284..8269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAACGTCATATCTCGACCACGGGACTGTCGGCAGATGTGTGGGGTGAGG
TGATCCACAGCAACTACACGTCCTCTAAGGAGCAGCTTGCCTCCACTGCA
ATACCCTCGTTTACATCTCACTCACCGATAGATCTCGCTACGTGACGTAT
AATATCTCAGTCGGGGTACCAAAGCAAGCAGCTCGGTGGGATCTCTGACG
GACGACACCGACTCAAATTGTCTGTAATTCAGTCCTATAGATACTACACA
GGGGTGTGCCTCTTTGAGCACCATGCCACGGTCAGCAAGAGAGCAAAAGG
TGTCCTTAACCAAAACAGTAAAGAAGGGGCGAGAGTTAAAGCAGGGTATC
GTCACAGACGTTCGGAAATGCGTAGACGAGTACCCCAGCATCTACGTCTT
CTCGTTCGCGAATCTGAGGAGCAAACTGTTGAAAGAGGTTCGCATGGACT
TTCGCAAGGACAGCCGATTCTTCATGGGCAAGAACAAGGTCATGATGATC
GCTCTTGGGAAAACCGTTGAGGATGAGTACCAGGACAATTTGAAACAAGT
CAGCAAGTGTTTGAGGGGGCAGGTGGGTGGCTATTATGCTGCGCTCTGGC
AATTGGCGAGGTTGCGTTGCTTTGCCGGGTCGAGGAGCAGACAACAGAGA
GCACTTGCAGTGTTGAGTCATGTATGGGGAGCAGTCAAGGACGGTACCAC
TATACTGGCTGGCTGTCTACAGCATCAGCAGAGGATGAGTGGGGAGAATC
GTTGGCCATTCTCGCTCGCTGATCGGAGTACTTCATGTATTTATCGACTG
ACACAACTTGATCAGTGTTAAGAGCTGAGACTCATCTTTCTACTGTATAA
CTCTGTGTGATACTGTGCACCTAGATCATAGTGTAATAATCCGAAACAAT
CAGTCGGGACCATCGCAAAATGCCATGTGTGTTGGTTGGGCTTGTTTAAT
GCTCAGACCGCACTCCTTCATCCTTCCGCAAAGAGCGGGAGGCAGCTTGT
TAGCTCGTTGCCTCGACAGTTGCCTTCGCCCTGAACACCGTCGTCGTTTG
TTATTCGTACCAGTATATATTAGCCTGAAAAGGTTTCACGTTCTCTTCTC
AAATATTCCAATTGCAATTAATATCCACTATGTGTACAGAACCCCTGAAG
ATGAAATCCCAACATCCCCTGCGTGTATTTTCAGCAAGGTGTTGACATGT
TGACATGAGCGACAAAATCTCGCAGGGCCCACCGCGAATCGATTGTGAAA
ACTGAACATGTGGCAGAACCGACCTCTGATAGGTTCTAAAAATATATATA
TATATCAATGAATCGACGTTAGCAACCGCGAACCGGTTCTAGTTATTGTC
ATATGAACAGTGCACACCACCGGGGTGTGAAAATTCTCGAGTTTCGGGCA
GCCAAAGCTGTAGCGCAGCGTATATACGAATGCGTCATCCGCCAACACAC
GACAGGCATAAGGGGCTTAACAAGGAACCATACCAAACCAGGGCCTCCAA
AAATCCAAATAAATCTCAAAGTTCATGACCAGGAGGTGTCGAGGTGGTGG
GAATGCCTTGATGATTTTGAAACAAGTAACTCAACATACAAGAAGTGGAC
ACAACGGTATCGTCAGTACCATAATATGCAGTACAACAAGCAGCAACAGT
TCCGTGAGGACACCTGGATAAGTATTATCACTCTTTCAAAAGAGAAAGCT
CAAGGCAAACTTGGATCATGATCAGAGCCACAACTACGAGCTGTTGTCAA
ACTCCATATTTCCCCTCTAACTATCGCAGGACACGGAAATATACTGGTTT
TGAACTGCCCAGGTGTAGGACACCCTTTCCTGGGATAAGCCGTTATGTAA
ATCGTGAAATAGTACAGGCGGTTTTATCGTGACACTCTTATATGGATAGT
ATTATTGTGCGCCGGCCATGCTGAAGGGTGTAGGTGGGGACGTTTAACGA
GCACCGATCCGCTAATCTTTTGAAAAAGAACTTGAATCGAAACCTCTTCA
ATGACACGTGTCCACGCATCCCCCATGAGCACGTAGTGTACGATTCAGGT
CGTACTGTTCAAGGGGAAAACATAAATTTTGTCAAGCCGCTTTGCAAATC
GGCTCAAATCTGGAGGCAAATTGGCTCGAATTATCCCCCTATCGTAGCAC
GACTCACAGAATGTTTCAGCAGTTTTCTGTTACTATGTGCAACATCCAAA
CAACGCGCAGTACCTTTCTCCCGAGCGTGATATTGACCGCTTCACATCTC
TATGTATATCATATGAGGTTAGTATGTAGCCCTCACACCCCCCAACGTGA
CCCCGTCTCTGCACTGTGTAACCAGTTACTACCATTTATCTGCCAGTGCC
CTTATGCAGTTTTTGTTCTGTAGAATGTGGTTTTCGAAAGTCTTTCGTTG
ATCTATCGAAATGGTGAGTCATGGATGCTTGTTCAAGCGCTGCTTTTGCT
GTTGAAATCCCCGGTCTCACGGTGCTCAGGTGGGGCTGCTGTTCACAAGC
AGGCCACGAGATGAAGTGGTAAAATACTTCAGTGCTCTTGCCGTTGCCGA
CCACGCCCCTCCGGGCTTCGTGCACGATGAGACGATCGTTTTGCCTACCG
GGTCGCTCGGGACATGGCCCGTATCGATGATGGACCAGTTTAGGAAGCTG
GGCGTGGTGGTGGAGGTTGAGGACGGGGTGTTGGTAAACCGCAAGGCTAT
AAAGATGTGCACCAAAGGGGAGCCGATCACACCGGAGGGAGCCAAACTGC
TGGTAAGTCATTTGAACCAAGTATTAACTGTTAATGAATGTATTGAATGT
ACACTAGGGTGACATGCACATTTTGCGATGCTGCATGGGCCATTGCGGTG
GTGAAATGAGAACAAAAAAATTAGTACTATTAATTCCTTCACGGAAGATA
CGGCATGGGATAGCACCTGCCTCCGTTCTAGACACGTTGAAGGTTGAAAG
TTGTCGGATGTTGTTGATGTACGCCTCGCCGCTCTGTCACCTATGTTGCA
AAACGGAGGATGATGTCGATACTGGTGGAGAGATGTAACCAAATGCAACG
CATAGAAAAACATGTTTCACCCATTTTCTTGAAGGAAATTAACTGTTACT
ACGCTGCGCGCTCGCAAGTGCGGAGTCTGGAGCTCTAAATTAGGTCGATG
TACCGCACCTTTCCAGCTACCGATCTCATCACACAGCAACTGGGTTGGTG
TCTTCCAAGCGAGCTAACGTTTCGGATGACCCGATTCAATAGAGCCGTTT
TGCAACTGGCAGGTACAAACACAGTACCGTCAGTTTGTAATCACTCCCTC
TGGCTTACAGCACTCGTTGAGGTCGGGTCTGTTGCAGAGCTGTTCCCCGT
CGCTGTGATTACTCTTAGAGCAGCGATGCTTACCCACACTGCATGACCCT
CCACCAACACCATCGATAGACTTTAAAATTGGTTGCAGCATGGGCTGATG
TGATTTCGTACATGGAAAAATGTTGACTTACCAACCACCAAAAAATGGTC
ACAGTTCGAACATCGATCTAGAGTGCTTCTCGTGCGAAAACCCAAGCCCT
GCATAAGCACATTCTTTCATTTTTTCCATTTTCCACCCCAGAGTGTGCAC
CCTCCGTATGCACCACTTGGAAGCGTTGTGAGGGGAGGAGCTTAAGCCCA
TGGCAAGATAACAAGTACCAAGCCCCGATTTCCGATCCCCGCAAAGCGCG
GGTTATACAATCGTATCGGTCTTCCTTCGGTTCATCACTTATAAACCGAT
GGAATAATGTGGGATAGCCGTTGTACGTGACTTGGCCGTTTTGACATTCG
GTTTTAGATTGCACTAGAAAGTACAGAATCCTCACACGTAAACCCTTGAT
CACACTTCCGTCCTGTCACCGGCAAAGGTTGCCCTTTAGCCGTGCCCTAC
CCGTTATGGCTTAGACTCGTTCAGCACATTCTTTCATGTCATAATCCCTG
CCGTATCGGAGTTTTCGTCAGTTGTCGTCCACCGTAAGTATCCGGCAATC
GCTTTGAGCGAGGTCCAAATGTGCAGCCACTGTCCCTAATTACTCGTTTC
GGGTGTTCGGAGGAAGAAGCACGAGAGTCCCCGGTCCTCACTCGCCATAA
AAAGCGTTCCATTTTGTGTGAAGTAAAATTGTTGTGTACGTGTAATAAAG
GTGCCAAAATAGCGGTCGTCATGTTGAGGGTGATGATGAAATAATAATGA
CTAGCCGCTACTTTTATGCACTAAAGCCTGAAATTTTCACGAGAGACGTT
ACCTCGCTGCCATTCACAATATTAACCGCCAACATCCGCCTCCTGTCAAT
TGGTGTTGCTATGTTGTGCTGTATAGGCGTTGTACGACAGGAAAATCGCT
GTGTTCACGATCTCGCTTTTGTGCCGTTGGAGTGCGGGGGAGTTCGAGCA
ATTAATGGAGCCAGGCAATGCGGAGGCAGGGGGGGGGGACGCGATGATTG
ACGATGATGAGGAGGGATGAAATTGGGTCATGCCTGTACAGCTAAAATTG
TGCTCTGAGGACGGTTTGATGGTCAGGCTACAACTGCGTGCTATAGCGGT
GTTTCCCGAGGTTGTGTTGCATTTTTTTTGGTCGGACGCAGCACGCTCAC
TCATCCTGCTTGTGTGATTCCAGTGTGTTTTTTCATTATTTTGGGTCGCT
GCTGTCACGTAGTATGGTTAGTGTAGAGAGGTCCGATCTTGCCGCGGTGT
TGCTCGGTTTATGTGGTGAACTGTTTGACTGCACAGAGAACCGTATTTGT
CGAGTTGACTGTTGACTAGGGTATTTGTTGTGTACATGGTTTGTTAATTA
GATGCAGTTTCAAAAGAGAGTCGTTGAAAACCAAAATCTGCAGCACCATC
GGCCCGAGTTGGGTTTACCTTCGTCAAACATGACGTTCAACTCTCCAGGC
GAGACACCTGCGGTGTCATTCGTCCACGTTCGCGTGCATGGTAGGGCTCG
ATTGTCTATGGATCAAAGGATAGATTCACACCACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1710:3284..8269+

>mRNA_H-paniculata_contig1710.3969.1 ID=mRNA_H-paniculata_contig1710.3969.1|Name=mRNA_H-paniculata_contig1710.3969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig1710:3284..8269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACGGTCAGCAAGAGAGCAAAAGGTGTCCTTAACCAAAACAGTAAA
GAAGGGGCGAGAGTTAAAGCAGGGTATCGTCACAGACGTTCGGAAATGCG
TAGACGAGTACCCCAGCATCTACGTCTTCTCGTTCGCGAATCTGAGGAGC
AAACTGTTGAAAGAGGTTCGCATGGACTTTCGCAAGGACAGCCGATTCTT
CATGGGCAAGAACAAGGTCATGATGATCGCTCTTGGGAAAACCGTTGAGG
ATGAGTACCAGGACAATTTGAAACAAGTCAGCAAGTGTTTGAGGGGGCAG
ATGCCACGGTCAGCAAGAGAGCAAAAGGTGTCCTTAACCAAAACAGTAAA
GAAGGGGCGAGAGTTAAAGCAGGGTATCGTCACAGACGTTCGGAAATGCG
TAGACGAGTACCCCAGCATCTACGTCTTCTCGTTCGCGAATCTGAGGAGC
AAACTGTTGAAAGAGGTTCGCATGGACTTTCGCAAGGACAGCCGATTCTT
CATGGGCAAGAACAAGGTCATGATGATCGCTCTTGGGAAAACCGTTGAGG
ATGAGTACCAGGACAATTTGAAACAAGTCAGCAAGTGTTTGAGGGGGCAG
GTGGGGCTGCTGTTCACAAGCAGGCCACGAGATGAAGTGGTAAAATACTT
CAGTGCTCTTGCCGTTGCCGACCACGCCCCTCCGGGCTTCGTGCACGATG
AGACGATCGTTTTGCCTACCGGGTCGCTCGGGACATGGCCCGTATCGATG
ATGGACCAGTTTAGGAAGCTGGGCGTGGTGGTGGAGGTTGAGGACGGGGT
GTTGGTAAACCGCAAGGCTATAAAGATGTGCACCAAAGGGGAGCCGATCA
CACCGGAGGGAGCCAAACTGCTGGTGGGGCTGCTGTTCACAAGCAGGCCA
CGAGATGAAGTGGTAAAATACTTCAGTGCTCTTGCCGTTGCCGACCACGC
CCCTCCGGGCTTCGTGCACGATGAGACGATCGTTTTGCCTACCGGGTCGC
TCGGGACATGGCCCGTATCGATGATGGACCAGTTTAGGAAGCTGGGCGTG
GTGGTGGAGGTTGAGGACGGGGTGTTGGTAAACCGCAAGGCTATAAAGAT
GTGCACCAAAGGGGAGCCGATCACACCGGAGGGAGCCAAACTGCTGGCGT
TGTACGACAGGAAAATCGCTGTGTTCACGATCTCGCTTTTGTGCCGTTGG
AGTGCGGGGGAGTTCGAGCAATTAATGGAGCCAGGCAATGCGGAGGCAGG
GGGGGGGGACGCGATGATTGACGATGATGAGGAGGGATGAGCGTTGTACG
ACAGGAAAATCGCTGTGTTCACGATCTCGCTTTTGTGCCGTTGGAGTGCG
GGGGAGTTCGAGCAATTAATGGAGCCAGGCAATGCGGAGGCAGGGGGGGG
GGACGCGATGATTGACGATGATGAGGAGGGATGA
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