mRNA_H-paniculata_contig17064.3955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17064.3955.1
Unique NamemRNA_H-paniculata_contig17064.3955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.570e-73
Identity = 315/855 (36.84%), Postives = 383/855 (44.80%), Query Frame = 1 
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPA-VGSNGTVDSGGGSGALHGWLTK---------------MGEEDSAEPLQEESSPTGSKGESV---RARPQSRSSPKRAK---RLEDKRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKPDRSPRRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFRDLRCPASSSTAAGESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQR---------KRGF-----GFGGEEAAIGTATFLQEGKAAAASGRGS--GESCAVKRKRTDVLEKAWTPRGMASPMSSPMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQLEARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSATETDVSVRDTAG-GGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQVSLDSLWTLRKLRDDNSEAGS--AVKSSVFDRDSLRAMPLGLGLHYASMTEREREQIARRYASAQTMSASRPAAGTSSVGATATDA------------FDSGKEDIEHDANARPPPSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHLHHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQDSVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAE-PGFVDLRSPAAPTLPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYRY 2403
            GVGLPRKYLGHGICDARSKLLNL  ATA A+ L   ALQLL+E ++PP KIRG+GLQMTRL+PA  G            +L GWL K                                G+   SV    + P  R+S +  K   R E   A              XXXXXXXXXXXXXXX                              R    P ++   S  QG           ++++      GG         L   A +  AAG S     SP  +R    AQ   ++ TP    G  R            +RG      G   E   +         +A   SGR S  G      R+R +            +P+ +   TP       PA  A SPSMSQITFSQID TVLGALPP++R EV+ Q+EAR+RQR +  G  ++PP +      G G     H      A    LS        R+  G GG    G E  +V       +REG D   R GPGK QQVS+DSLW LRKLR++  E     A   SVFDRDSLRA+PLGLGLHYAS+TE +R QIARRY+ A         AG  S G   + A                 +DI +D ++ PPP           S SSP     SP AV     L   E      P + E L  +SLSQVDRDVLDCLP DVRDEVLR+I +N G S    G                +++   DQ       +  Y     D +G+ +    VD+ SP+    PQ      GG G  VF+VE A  LRGVLR WIGGAV SPSQWHLEL+YRY
Sbjct:  682 GVGLPRKYLGHGICDARSKLLNLGHATADAATLKPHALQLLRECKVPPGKIRGIGLQMTRLVPASAGGXXXXXXXXXXXSLGGWLIKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSRSVLGDASNPAFRASDENLKPCERAECLGAVGEAAATVDTNSGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEAGPCKNGLESPGQGTGTPSSLPDVSDAASAPSKTAGG---------LAAEAEAGGAAGGSSPCFDSPESARKRKAAQ---DLSTPADGTGAPRNASIGDCATPPARRGARGTTRGEQAEPPPLPPTDIASSRQAGGNSGRLSPGGRFSPPARRRAEPAXXXXXXXXXMTPVGA---TP------PPAGSAGSPSMSQITFSQIDKTVLGALPPELRREVISQVEARKRQRHD--GIVTLPPPS---PHSGGGPSAPPHGEGRAGAGTGPLS--------REAPGQGGAAAGGGETREV-------VREGFDTADRSGPGKVQQVSIDSLWGLRKLREEGGEGDEPGAGPPSVFDRDSLRALPLGLGLHYASLTENQRAQIARRYSQAAGGHGRSSTAGEGSRGRGLSPARGDHDLPYAKASVAGTADDIINDGSSLPPPL--SNXXXXXXSVSSPGMMAVSPEAVRLASPLPREERSVAESPRSAE-LFRLSLSQVDRDVLDCLPSDVRDEVLRSIAANPGGS----GAXXXXXXXXXXXXXXXINQHEDDQGPETT--VTAYDAPQDDRDGRFDMEDVVDICSPS----PQGKHAATGGVGHGVFDVEPAGTLRGVLRRWIGGAVRSPSQWHLELLYRY 1482
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 4.600e-67
Identity = 311/856 (36.33%), Postives = 379/856 (44.28%), Query Frame = 1 
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPAVGSNGTVDSGGGSGALHGWLTKMGE--EDSAEPLQEESSPTGSKGESVRARPQSRSSPK-----------RAK----------RLEDKRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKP--DRSPRRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFR----------DLRCPASSSTAAGESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQRKRGFGFGGEEAA------IGTATFLQEGKAAAASGRGSGESCAVKRKRTDVLEKAWTPRGMASPMSSPMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQLEARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSATETDVSVRDTAGGGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQVSLDSLWTLRKLRDDNSEAGS--AVKSSVFDRDSLRAMPLGLGLHYASMTEREREQIARRYASAQTMSASRPAAGTSSVGATATD-----------AFDSGKEDIEHDANARPPPSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHLHHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQDSVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAE-PGFVDLRSPAAPTLPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYRY 2403
            GVGLPRKYLGHG+CDARSKLLNL  ATA A+ L   ALQLL+E ++PP KIRG+GLQMTRL+P  G  G+   GG +G+L GWL K G   E S +PL    S               R+S +           RAK           + ++ A      XXXXXXXXXXXXXXXXXXXXXXX                           P       P  D     SLP           +  +SA T   GG   QE              D    A   TAA +S   A     SR+ ++        TP    G   T R       GE+A        G A   Q G          G                                            A SPSMSQITFSQID TVLGALPP++R EV+ Q+EAR+RQR++  G  ++P        G S    G              +   T    R+  G G    G  R          +REG D   R GPGK QQVS+DSLW+LRKL ++  E     A   SVFDRDSLRA+PLGLGLHYAS+TE++R Q+ARRY+ A          G +S G  ++            A  +G  D   D  +               ++S  M    SP AV     L G E     PP + E L  +SLSQVDRDVLDCLP DVRDEVLR I +N+G S +  G  G            G    + DQ    +  +  Y     D++G+ +    VD+ SP+     Q  Q   G  G   F+ E A  LRGVLR WIGGAV SPSQWHLEL+YRY
Sbjct:  944 GVGLPRKYLGHGVCDARSKLLNLGHATADAATLKPHALQLLRECKVPPGKIRGIGLQMTRLVPG-GGGGSGADGGRAGSLGGWLIKPGAGGEGSIDPLTSRHSAPXXXXXXXXXXXXXRASSRSVLGDASTPALRAKDENVKPCDLGAVAEEAATVDTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEAGPCENSLESPGQDTGTASSLPV---------VSDAASAPTNAAGGLAAQEAEAGXXXXGSSPCFDSPESARKRTAAQDSSTSADGAGSSRNASI----GGCATPPARRGARGTTR-------GEQAEPPPLPPTGIAPPRQAG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGSAGSPSMSQITFSQIDKTVLGALPPELRQEVISQVEARKRQRQD--GIVTLPXXXXXXXXGPSAPPYGEG-----------RAGARTGPLSREAPGQGGAAGGETR--------EVVREGFDTADRSGPGKVQQVSIDSLWSLRKLTEEGGEGDELGAGPPSVFDRDSLRALPLGLGLHYASLTEKQRAQVARRYSQAVGGHGRSSTGGDASRGRESSPSRGGHDLPYAKASVAGTADAVVDDGSXXXXXXXXXXXXXXPASSPGMMMAVSPEAVGQVSALPGDERSAAEPPRSAE-LFRLSLSQVDRDVLDCLPSDVRDEVLRNIAANAGGSGA--GDEGXXXXXXXXXXXXGRDHHQDDQG--CETTVNAYEAPDDDQDGRVDMEDVVDICSPSL----QEKQTATGVVGHGAFDAEPAGTLRGVLRRWIGGAVRSPSQWHLELLYRY 1738
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: REV1_DROME (DNA repair protein Rev1 n=6 Tax=melanogaster subgroup TaxID=32351 RepID=REV1_DROME)

HSP 1 Score: 62.0 bits (149), Expect = 4.550e-6
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   19 KYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPA 192
            KY+GHG+CD  +K   +K AT   + +T   L L+K+A IPPD++RG+G+ +TRL  A
Sbjct:  622 KYMGHGVCDIINKSSLIKYATDDVNVITTVVLDLMKDADIPPDELRGLGIHLTRLEDA 679
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A2P6VBM3_9CHLO (DNA polymerase kappa n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBM3_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 5.250e-6
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRL 183
            GVG P K++GHGICD  S+ + L + T +A+D++     +L   R+PP  IRG+G+Q+TRL
Sbjct:  628 GVGEPLKFMGHGICDNLSRSVTLARYTDAAADISRECRAVLAVLRVPPQDIRGMGIQVTRL 688
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A7S0TQT5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TQT5_HEMAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-5
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    7 GLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRL 183
            G  +  +GHGICD  S+ + L   TA A D+   AL L+++ +IPP+ IRG+G+Q+++L
Sbjct:   27 GHRKGMMGHGICDKMSRSVTLPYFTADAEDIRRTALDLVRQLQIPPEDIRGMGIQVSKL 85
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BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Match: A0A8J9ZM14_BRALA (REV1 protein n=3 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZM14_BRALA)

HSP 1 Score: 59.7 bits (143), Expect = 2.520e-5
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   13 PRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDKIRGVGLQMTRLIPAVGSN 204
            P K++GHGICD+ SK   L  AT     +   A  +L + ++PP  +RG+G+QMTRL+ A G++
Sbjct:  716 PSKFMGHGICDSLSKSSTLGLATDDPKVIGKEAWNVLSQMKLPPSDLRGLGIQMTRLVSASGAS 779
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17064.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSG0_ECTSI2.570e-7336.84Terminal deoxycytidyl transferase rev1, putative n... [more]
A0A6H5L1W8_9PHAE4.600e-6736.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
REV1_DROME4.550e-646.55DNA repair protein Rev1 n=6 Tax=melanogaster subgr... [more]
A0A2P6VBM3_9CHLO5.250e-645.90DNA polymerase kappa n=1 Tax=Micractinium conductr... [more]
A0A7S0TQT5_HEMAN1.290e-542.37Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A8J9ZM14_BRALA2.520e-542.19REV1 protein n=3 Tax=Branchiostoma lanceolatum Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17064contigH-paniculata_contig17064:352..4986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue2.3e-76
Seed eggNOG ortholog2880.D7FSG0
KEGG koko:K03515
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000731,GO:0002200,GO:0002206,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002565,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0016043,GO:0016444,GO:0016445,GO:0016740,GO:0016772,GO:0016779,GO:0017125,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.deoxycytidyl transferase activity
EggNOG OGsCOG0389@1,KOG2093@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons7
Model size2403
Cds size2403
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.6688142-CDS-H-paniculata_contig17064:351..7251622929348.6688142-CDS-H-paniculata_contig17064:351..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 352..725 +
1691480825.2687025-CDS-H-paniculata_contig17064:351..7251691480825.2687025-CDS-H-paniculata_contig17064:351..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 352..725 +
1622929348.6866968-CDS-H-paniculata_contig17064:1094..18421622929348.6866968-CDS-H-paniculata_contig17064:1094..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 1095..1842 +
1691480825.2804751-CDS-H-paniculata_contig17064:1094..18421691480825.2804751-CDS-H-paniculata_contig17064:1094..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 1095..1842 +
1622929348.7008908-CDS-H-paniculata_contig17064:2019..23941622929348.7008908-CDS-H-paniculata_contig17064:2019..2394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 2020..2394 +
1691480825.2883968-CDS-H-paniculata_contig17064:2019..23941691480825.2883968-CDS-H-paniculata_contig17064:2019..2394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 2020..2394 +
1622929348.719951-CDS-H-paniculata_contig17064:3768..40851622929348.719951-CDS-H-paniculata_contig17064:3768..4085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 3769..4085 +
1691480825.2970264-CDS-H-paniculata_contig17064:3768..40851691480825.2970264-CDS-H-paniculata_contig17064:3768..4085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 3769..4085 +
1622929348.7373931-CDS-H-paniculata_contig17064:4256..45431622929348.7373931-CDS-H-paniculata_contig17064:4256..4543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4257..4543 +
1691480825.3083358-CDS-H-paniculata_contig17064:4256..45431691480825.3083358-CDS-H-paniculata_contig17064:4256..4543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4257..4543 +
1622929348.7505426-CDS-H-paniculata_contig17064:4654..48391622929348.7505426-CDS-H-paniculata_contig17064:4654..4839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4655..4839 +
1691480825.3167338-CDS-H-paniculata_contig17064:4654..48391691480825.3167338-CDS-H-paniculata_contig17064:4654..4839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4655..4839 +
1622929348.7662597-CDS-H-paniculata_contig17064:4869..49861622929348.7662597-CDS-H-paniculata_contig17064:4869..4986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4870..4986 +
1691480825.3259642-CDS-H-paniculata_contig17064:4869..49861691480825.3259642-CDS-H-paniculata_contig17064:4869..4986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17064 4870..4986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17064.3955.1prot_H-paniculata_contig17064.3955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17064 352..4986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17064.3955.1

>prot_H-paniculata_contig17064.3955.1 ID=prot_H-paniculata_contig17064.3955.1|Name=mRNA_H-paniculata_contig17064.3955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=801bp
GVGLPRKYLGHGICDARSKLLNLKQATASASDLTVAALQLLKEARIPPDK
IRGVGLQMTRLIPAVGSNGTVDSGGGSGALHGWLTKMGEEDSAEPLQEES
SPTGSKGESVRARPQSRSSPKRAKRLEDKRAGGGGETAASAAAAAAPEHR
THGSSNSSSSTSTRGSDCSRDGEGKSVAAAGHARRPSPGHRGSIKPDRSP
RRSLPQGRRFHEESQATLESSARTRNRGGGGDQEQRFRDLRCPASSSTAA
GESPAVAGSPARSRSVAVAQPPSEVRTPHVALGGGRTQRKRGFGFGGEEA
AIGTATFLQEGKAAAASGRGSGESCAVKRKRTDVLEKAWTPRGMASPMSS
PMMTPASRLADTPASGASSPSMSQITFSQIDNTVLGALPPDIRTEVVLQL
EARQRQREENAGASSMPPTTNARDSGGSGGKGGRHIINSDAAIAALLSAT
ETDVSVRDTAGGGEGDNGTERGQVPIAPVPFIREGLDVTVRDGPGKTQQV
SLDSLWTLRKLRDDNSEAGSAVKSSVFDRDSLRAMPLGLGLHYASMTERE
REQIARRYASAQTMSASRPAAGTSSVGATATDAFDSGKEDIEHDANARPP
PSRPGAFPLRSSSTSSPMPCPGSPTAVTGGRRLLGGEAPPYSPPPALEHL
HHISLSQVDRDVLDCLPHDVRDEVLRAIVSNSGASSSSSGMPGARRGPQD
SVDEPGLSERRVDQSERGDGGIAEYGGATADEEGQAEPGFVDLRSPAAPT
LPQLSQDEEGGEGTRVFEVESAEVLRGVLRGWIGGAVASPSQWHLELIYR
Y
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mRNA from alignment at H-paniculata_contig17064:352..4986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17064.3955.1 ID=mRNA_H-paniculata_contig17064.3955.1|Name=mRNA_H-paniculata_contig17064.3955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4635bp|location=Sequence derived from alignment at H-paniculata_contig17064:352..4986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTGGGACTCCCGAGGAAGTACCTCGGCCACGGTATATGCGACGCACG
CTCGAAACTGCTAAATCTCAAACAAGCTACGGCCTCTGCGAGCGATCTAA
CAGTGGCCGCCCTGCAGCTCTTGAAGGAAGCGAGGATACCGCCAGACAAA
ATCAGGGGCGTGGGCCTGCAGATGACACGGCTGATTCCGGCAGTCGGCAG
TAACGGCACTGTAGATAGCGGCGGTGGTAGCGGCGCATTGCATGGTTGGC
TGACGAAAATGGGAGAAGAGGACTCGGCGGAGCCTCTACAGGAGGAATCA
TCGCCTACGGGATCTAAGGGGGAAAGCGTTAGAGCGCGGCCGCAAAGCAG
GTCCTCACCAAAGAGAGCGAAAAGGTCGCTTGAGGCGGCGCAGGAATCTG
TGCGCGACAGTCCAACTTCACGAGACCTTGATTTCTCTGACCACCGCAAA
GTTAACCACAACAAATTCACGCGAATAGGCAGCACAACTAGTGGCGACGA
CAGCAGCAGCAGCAGCAGTAGCCGGGCATATTCCCGAAGCTTCCCCAACC
CGTCTGTTGATGAAGGATCTACCTCCGATGCAGTCACACCTGATGTGTAT
GCTGCAGGCGTGCAAGACATAGCGCTTGGACAACCACGGGCGCAGAGTGA
GACCCGTGAGACCCCTCCTGTAGCTCTGCTGCAACGGAGTAATGCTAAAG
TGAGGTCAAAGGATGCTATTGCTGCTGGTGCAAAGCGCTCAAGACTGGAA
GATAAACGGGCTGGTGGTGGTGGAGAAACAGCTGCTTCTGCTGCCGCCGC
CGCAGCGCCAGAACACCGCACACACGGCAGCAGCAACAGCAGCAGCAGTA
CAAGCACTCGCGGTAGTGACTGTTCTCGGGATGGAGAGGGCAAAAGCGTA
GCGGCAGCAGGGCACGCCCGGCGTCCCTCTCCTGGTCACCGCGGCAGCAT
CAAGCCCGACCGTTCTCCTCGGCGCTCTCTTCCGCAGGGCCGGAGGTTTC
ATGAGGAGTCTCAAGCGACTTTGGAAAGTTCAGCAAGAACGAGGAACCGC
GGTGGCGGCGGTGACCAAGAGCAGCGCTTTCGGGATTTGCGTTGTCCTGC
TTCTAGTTCTACAGCAGCAGGAGAATCGCCCGCAGTGGCGGGCTCGCCCG
CGAGAAGCCGATCCGTTGCTGTGGCGCAGCCGCCGTCTGAAGTTCGGACA
CCCCATGTGGCTCTGGGGGGTGGTAGAACGCAGAGGAAGCGTGGGTTTGG
GTTTGGTGGAGAAGAGGCCGCTATTGGGACCGCGACTTTTTTGCAGGAGG
GTAAGGCGGCGGCGGCTTCTGGCCGAGGTAGTGGTGAGTCTTGTGCCGTG
AAGCGAAAGCGGACTGATGTATTGGAGAAGGCGTGGACGCCCAGAGGGAT
GGCCTCTCCTATGTCGAGTCCGATGATGACTCCTGCTAGTCGATTGGCGG
ATACGCCGGCGAGCGGGGCCAGTAGTCCGTCCATGTCACAGGTATTTTCG
TTTGTTTTGTGTATGTTTTCTGGGTTTTGTTTCGTGTTTTTCTGTTTTCA
TTTTTGTCTTTTTCTAGGTTTCCTTCAAAATTTTTGCCTCACATTTCCTC
CCACGCAACCGCTGCATATTGCCTGCCATGTATTTAATCCCAAACTGTTG
AAATTGTGTTTCCACCAGATAACTTTCTCTCAGATAGACAACACGGTGCT
CGGCGCCCTCCCCCCGGACATCCGAACGGAAGTCGTTTTACAGCTCGAAG
CCCGCCAAAGACAACGAGAAGAAAACGCCGGTGCCTCTTCCATGCCTCCC
ACAACGAACGCAAGAGATAGTGGCGGCAGTGGGGGTAAAGGAGGGAGGCA
CATCATTAACAGCGATGCGGCCATCGCGGCGCTGCTGTCGGCAACAGAAA
CCGATGTTTCTGTGCGCGACACTGCGGGTGGTGGCGAAGGCGACAATGGG
ACTGAGAGGGGGCAGGTGCCAATTGCGCCTGTACCTTTCATACGTGAAGG
GTTGGATGTAACTGTCCGGGATGGCCCGGGCAAAACTCAGCAGGTGAGAG
GGAGAGGGACTGATGACGTGTGTTTTGTCATGATGAATTCGCTTGTCGGC
TACGTACATGTTGAATTCCTGCTTTATGTTCTGGGGCTGCGCTCTACTGA
CATGGTGTGTGTGTGTGCTTGCGTACGCGAGATGGGAGGGAGCACATCAA
TAGATGTGTTTGTACCCTTGGGTCATCGGTACATGGACGTTCAACGGGCA
ACCTTCCTTCATGGAATACCCGCGAGAGCCACAATGGGCAGATTTGGTGA
AATGTAAAAACGAGCAGATATCACTCGTAGGGTAGGGTATCTTGCCAATC
GTGATGTCTTTGCCAGACGTTATTCCTATGATGGTCGATTTACTATTATC
TACCGTTGCTTAATATACATTTAGACCGAGCCGATTATTTTGCCAATTAT
GATGTCTTTGCCGCACGTTATTCCCATGATGGCCGATTTAAGTCATCAAG
TGCAGATGTCCGTTGGTGTTACACCCTGCACTAACTGCACGTGTTTGTGA
CCAAGTTGAGTTTCCTCCCTTGACAAAATAGGTTTGACTGCAGATAACGA
CTTAGGTTCCGCGACTGTTGGTAAGTTTCTTGAGTAGCACCTTTCCGGGT
TGACGATGCCTTTCAACGTCGAGAGTTGATCATTGGGCGTTAAAGGGGAA
GCTCTCTACCGCGATACTACCTCTGTTCAATGGATGGGCCCTTTCTCGCC
GTAACAGCCACCGTGGATTGTCGAGACGTGGCGCTTACGATGCGCTTGCT
TATTTCGGCGAATTGTCGTCTCTTTTTCAAAAGAGACGAATCATTTTGTT
GAGGTCTTGTTTAAAGCTGCCAAATACTGAAGGAAAAACAACTTGAGGCG
ATCGCAATCAACCGGTACATCGCATCTGACGTGAAACCTTTATGCCGGGA
AACGAAACTCTCGAAAGGCCTGCAAGTGACGAACACGATATTCAATGGGT
ACTGTTTGCCCTAGTGTAAGGGGTGCATGGCCGTGGGTAATGACTCTTTT
CAATCAACCTCGATGTTCTCGAAAACGCCTGCGCTCGTCGTAGCGGTGAT
TGTGCACTTGGGAATGTCTCATCGAGATATCCCGTTGGATAAGACGTAGC
TTGAAACAGTGCGGGGGTCTTGCTTTTCGAAACAATCGAGTTCTGAAAAG
GCTTCACCGCAAATAATGATATACACGATGTACACGATGTACTAGTCTGT
TTAGTCTAACACGAATCGCAAAAAAAGGCATTCAAGGTATCTTACCCAAT
CTCTCCTCATTTATCCTGCTCAGTCTCTCGATATATGTTCCACATGACAC
GAAATCTGGATGTTACTGTACGGTACTTTCCCCCCTGTTGTACTATGTTC
ATCGCTTGCCCACGTAGGTCAGCCTGGACAGCCTATGGACACTGCGCAAG
CTCAGAGACGACAACAGCGAAGCAGGAAGCGCCGTGAAGTCTTCGGTATT
CGACCGGGATTCGCTTCGCGCCATGCCCCTCGGTCTGGGCCTCCACTATG
CCTCTATGACAGAACGCGAGCGGGAGCAAATCGCTCGCCGATACGCGTCC
GCTCAAACAATGTCCGCGTCGCGGCCGGCGGCGGGGACAAGCTCCGTCGG
AGCTACTGCCACCGACGCTTTTGATTCCGGCAAGGAAGACATCGAACATG
ACGCCAACGCAAGGCCACCACCAAGTCGTCCTGGGTGTGACAGTGGCAAC
CCTGGTGGTGCGCCCGTGGGCAGTGATGATAATGATCATCACACTATTGC
CGAACAACCAGTGGCGCGGTCAGACGAAGTTGTGTGTGTATCGAGGCAGG
AATATTTCGACGACAGCCAACACACTCGTGATCATCTTCCCCCCCCCCCG
GCTAGAGCATTTCCTCTGAGATCTAGTTCTACCTCATCGCCGATGCCTTG
CCCTGGGTCCCCGACGGCAGTCACCGGAGGGCGTCGCCTTTTGGGGGGGG
AAGCGCCTCCCTACTCCCCCCCCCCCGCCTTGGAGCATCTCCATCACATT
AGCCTGTCCCAGGTGGACAGAGACGTGTTGGATTGCCTGCCGCATGACGT
CAGGGACGAGGTTTTGCGAGCAATTGTTTCTAATAGCGGGGCGAGCAGCA
GCAGCAGCGGGATGCCTGGTGCGAGGAGAGGGCCACAAGACAGTAGTGCA
GGGTATGTTGACCTATCAGAGCAGAGGCGGGAAGGAGAGGATAAACCAGG
ATTGGGCGAACGCACGGATCACGTTGTTGACGAATCCGAGCGCAGTGGGA
AAGGCGTTGATGAACCAGGGTTGAGCGAGCGGCGCGTTGACCAATCAGAG
CGCGGCGACGGTGGCATCGCGGAGTATGGTGGGGCGACGGCGGATGAGGA
AGGCCAAGCAGAGCCTGGTTTTGTCGACTTGCGGTCGCCGGCTGCGCCCA
CGCTGCCGCAATTATCTCAGGATGAGGAAGGCGGCGAGGTAGCGTCAGAG
CCGGCGGTGCGAAAGAAGGGTACTCGCGTTTTCGAGGTGGAAAGTGCAGA
GGTGCTGAGGGGGGTGCTGCGGGGTTGGATCGGCGGCGCGGTGGCCTCGC
CCTCTCAGTGGCACTTGGAGCTGATCTACAGGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17064:352..4986+

>mRNA_H-paniculata_contig17064.3955.1 ID=mRNA_H-paniculata_contig17064.3955.1|Name=mRNA_H-paniculata_contig17064.3955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4806bp|location=Sequence derived from alignment at H-paniculata_contig17064:352..4986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTGGGACTCCCGAGGAAGTACCTCGGCCACGGTATATGCGACGCACG
CTCGAAACTGCTAAATCTCAAACAAGCTACGGCCTCTGCGAGCGATCTAA
CAGTGGCCGCCCTGCAGCTCTTGAAGGAAGCGAGGATACCGCCAGACAAA
ATCAGGGGCGTGGGCCTGCAGATGACACGGCTGATTCCGGCAGTCGGCAG
TAACGGCACTGTAGATAGCGGCGGTGGTAGCGGCGCATTGCATGGTTGGC
TGACGAAAATGGGAGAAGAGGACTCGGCGGAGCCTCTACAGGAGGAATCA
TCGCCTACGGGATCTAAGGGGGAAAGCGTTAGAGCGCGGCCGCAAAGCAG
GTCCTCACCAAAGAGAGCGAAAAGGGCGTGGGACTCCCGAGGAAGTACCT
CGGCCACGGTATATGCGACGCACGCTCGAAACTGCTAAATCTCAAACAAG
CTACGGCCTCTGCGAGCGATCTAACAGTGGCCGCCCTGCAGCTCTTGAAG
GAAGCGAGGATACCGCCAGACAAAATCAGGGGCGTGGGCCTGCAGATGAC
ACGGCTGATTCCGGCAGTCGGCAGTAACGGCACTGTAGATAGCGGCGGTG
GTAGCGGCGCATTGCATGGTTGGCTGACGAAAATGGGAGAAGAGGACTCG
GCGGAGCCTCTACAGGAGGAATCATCGCCTACGGGATCTAAGGGGGAAAG
CGTTAGAGCGCGGCCGCAAAGCAGGTCCTCACCAAAGAGAGCGAAAAGAC
TGGAAGATAAACGGGCTGGTGGTGGTGGAGAAACAGCTGCTTCTGCTGCC
GCCGCCGCAGCGCCAGAACACCGCACACACGGCAGCAGCAACAGCAGCAG
CAGTACAAGCACTCGCGGTAGTGACTGTTCTCGGGATGGAGAGGGCAAAA
GCGTAGCGGCAGCAGGGCACGCCCGGCGTCCCTCTCCTGGTCACCGCGGC
AGCATCAAGCCCGACCGTTCTCCTCGGCGCTCTCTTCCGCAGGGCCGGAG
GTTTCATGAGGAGTCTCAAGCGACTTTGGAAAGTTCAGCAAGAACGAGGA
ACCGCGGTGGCGGCGGTGACCAAGAGCAGCGCTTTCGGGATTTGCGTTGT
CCTGCTTCTAGTTCTACAGCAGCAGGAGAATCGCCCGCAGTGGCGGGCTC
GCCCGCGAGAAGCCGATCCGTTGCTGTGGCGCAGCCGCCGTCTGAAGTTC
GGACACCCCATGTGGCTCTGGGGGGTGGTAGAACGCAGAGGAAGCGTGGG
TTTGGGTTTGGTGGAGAAGAGGCCGCTATTGGGACCGCGACTTTTTTGCA
GGAGGGTAAGGCGGCGGCGGCTTCTGGCCGAGGTAGTGGTGAGTCTTGTG
CCGTGAAGCGAAAGCGGACTGATGTATTGGAGAAGGCGTGGACGCCCAGA
GGGATGGCCTCTCCTATGTCGAGTCCGATGATGACTCCTGCTAGTCGATT
GGCGGATACGCCGGCGAGCGGGGCCAGTAGTCCGTCCATGTCACAGACTG
GAAGATAAACGGGCTGGTGGTGGTGGAGAAACAGCTGCTTCTGCTGCCGC
CGCCGCAGCGCCAGAACACCGCACACACGGCAGCAGCAACAGCAGCAGCA
GTACAAGCACTCGCGGTAGTGACTGTTCTCGGGATGGAGAGGGCAAAAGC
GTAGCGGCAGCAGGGCACGCCCGGCGTCCCTCTCCTGGTCACCGCGGCAG
CATCAAGCCCGACCGTTCTCCTCGGCGCTCTCTTCCGCAGGGCCGGAGGT
TTCATGAGGAGTCTCAAGCGACTTTGGAAAGTTCAGCAAGAACGAGGAAC
CGCGGTGGCGGCGGTGACCAAGAGCAGCGCTTTCGGGATTTGCGTTGTCC
TGCTTCTAGTTCTACAGCAGCAGGAGAATCGCCCGCAGTGGCGGGCTCGC
CCGCGAGAAGCCGATCCGTTGCTGTGGCGCAGCCGCCGTCTGAAGTTCGG
ACACCCCATGTGGCTCTGGGGGGTGGTAGAACGCAGAGGAAGCGTGGGTT
TGGGTTTGGTGGAGAAGAGGCCGCTATTGGGACCGCGACTTTTTTGCAGG
AGGGTAAGGCGGCGGCGGCTTCTGGCCGAGGTAGTGGTGAGTCTTGTGCC
GTGAAGCGAAAGCGGACTGATGTATTGGAGAAGGCGTGGACGCCCAGAGG
GATGGCCTCTCCTATGTCGAGTCCGATGATGACTCCTGCTAGTCGATTGG
CGGATACGCCGGCGAGCGGGGCCAGTAGTCCGTCCATGTCACAGATAACT
TTCTCTCAGATAGACAACACGGTGCTCGGCGCCCTCCCCCCGGACATCCG
AACGGAAGTCGTTTTACAGCTCGAAGCCCGCCAAAGACAACGAGAAGAAA
ACGCCGGTGCCTCTTCCATGCCTCCCACAACGAACGCAAGAGATAGTGGC
GGCAGTGGGGGTAAAGGAGGGAGGCACATCATTAACAGCGATGCGGCCAT
CGCGGCGCTGCTGTCGGCAACAGAAACCGATGTTTCTGTGCGCGACACTG
CGGGTGGTGGCGAAGGCGACAATGGGACTGAGAGGGGGCAGGTGCCAATT
GCGCCTGTACCTTTCATACGTGAAGGGTTGGATGTAACTGTCCGGGATGG
CCCGGGCAAAACTCAGCAGATAACTTTCTCTCAGATAGACAACACGGTGC
TCGGCGCCCTCCCCCCGGACATCCGAACGGAAGTCGTTTTACAGCTCGAA
GCCCGCCAAAGACAACGAGAAGAAAACGCCGGTGCCTCTTCCATGCCTCC
CACAACGAACGCAAGAGATAGTGGCGGCAGTGGGGGTAAAGGAGGGAGGC
ACATCATTAACAGCGATGCGGCCATCGCGGCGCTGCTGTCGGCAACAGAA
ACCGATGTTTCTGTGCGCGACACTGCGGGTGGTGGCGAAGGCGACAATGG
GACTGAGAGGGGGCAGGTGCCAATTGCGCCTGTACCTTTCATACGTGAAG
GGTTGGATGTAACTGTCCGGGATGGCCCGGGCAAAACTCAGCAGGTCAGC
CTGGACAGCCTATGGACACTGCGCAAGCTCAGAGACGACAACAGCGAAGC
AGGAAGCGCCGTGAAGTCTTCGGTATTCGACCGGGATTCGCTTCGCGCCA
TGCCCCTCGGTCTGGGCCTCCACTATGCCTCTATGACAGAACGCGAGCGG
GAGCAAATCGCTCGCCGATACGCGTCCGCTCAAACAATGTCCGCGTCGCG
GCCGGCGGCGGGGACAAGCTCCGTCGGAGCTACTGCCACCGACGCTTTTG
ATTCCGGCAAGGAAGACATCGAACATGACGCCAACGCAAGGCCACCACCA
AGTCGTCCTGGGTCAGCCTGGACAGCCTATGGACACTGCGCAAGCTCAGA
GACGACAACAGCGAAGCAGGAAGCGCCGTGAAGTCTTCGGTATTCGACCG
GGATTCGCTTCGCGCCATGCCCCTCGGTCTGGGCCTCCACTATGCCTCTA
TGACAGAACGCGAGCGGGAGCAAATCGCTCGCCGATACGCGTCCGCTCAA
ACAATGTCCGCGTCGCGGCCGGCGGCGGGGACAAGCTCCGTCGGAGCTAC
TGCCACCGACGCTTTTGATTCCGGCAAGGAAGACATCGAACATGACGCCA
ACGCAAGGCCACCACCAAGTCGTCCTGGAGCATTTCCTCTGAGATCTAGT
TCTACCTCATCGCCGATGCCTTGCCCTGGGTCCCCGACGGCAGTCACCGG
AGGGCGTCGCCTTTTGGGGGGGGAAGCGCCTCCCTACTCCCCCCCCCCCG
CCTTGGAGCATCTCCATCACATTAGCCTGTCCCAGGTGGACAGAGACGTG
TTGGATTGCCTGCCGCATGACGTCAGGGACGAGGTTTTGCGAGCAATTGT
TTCTAATAGCGGGGCGAGCAGCAGCAGCAGCGGGATGCCTGGTGCGAGGA
GAGGGCCACAAGACAAGCATTTCCTCTGAGATCTAGTTCTACCTCATCGC
CGATGCCTTGCCCTGGGTCCCCGACGGCAGTCACCGGAGGGCGTCGCCTT
TTGGGGGGGGAAGCGCCTCCCTACTCCCCCCCCCCCGCCTTGGAGCATCT
CCATCACATTAGCCTGTCCCAGGTGGACAGAGACGTGTTGGATTGCCTGC
CGCATGACGTCAGGGACGAGGTTTTGCGAGCAATTGTTTCTAATAGCGGG
GCGAGCAGCAGCAGCAGCGGGATGCCTGGTGCGAGGAGAGGGCCACAAGA
CAGCGTTGATGAACCAGGGTTGAGCGAGCGGCGCGTTGACCAATCAGAGC
GCGGCGACGGTGGCATCGCGGAGTATGGTGGGGCGACGGCGGATGAGGAA
GGCCAAGCAGAGCCTGGTTTTGTCGACTTGCGGTCGCCGGCTGCGCCCAC
GCTGCCGCAATTATCTCAGGATGAGGAAGGCGGCGAGGCGTTGATGAACC
AGGGTTGAGCGAGCGGCGCGTTGACCAATCAGAGCGCGGCGACGGTGGCA
TCGCGGAGTATGGTGGGGCGACGGCGGATGAGGAAGGCCAAGCAGAGCCT
GGTTTTGTCGACTTGCGGTCGCCGGCTGCGCCCACGCTGCCGCAATTATC
TCAGGATGAGGAAGGCGGCGAGGGTACTCGCGTTTTCGAGGTGGAAAGTG
CAGAGGTGCTGAGGGGGGTGCTGCGGGGTTGGATCGGCGGCGCGGTGGCC
TCGCCCTCTCAGTGGCACTTGGAGCTGATCTACAGGTACGGTACTCGCGT
TTTCGAGGTGGAAAGTGCAGAGGTGCTGAGGGGGGTGCTGCGGGGTTGGA
TCGGCGGCGCGGTGGCCTCGCCCTCTCAGTGGCACTTGGAGCTGATCTAC
AGGTAC
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