mRNA_H-paniculata_contig17050.3948.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17050.3948.1
Unique NamemRNA_H-paniculata_contig17050.3948.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17050.3948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17050contigH-paniculata_contig17050:2093..2544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.874781-UTR-H-paniculata_contig17050:2092..21241622929347.874781-UTR-H-paniculata_contig17050:2092..2124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17050 2093..2124 +
1691480824.9221814-UTR-H-paniculata_contig17050:2092..21241691480824.9221814-UTR-H-paniculata_contig17050:2092..2124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17050 2093..2124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.8992999-CDS-H-paniculata_contig17050:2124..25441622929347.8992999-CDS-H-paniculata_contig17050:2124..2544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17050 2125..2544 +
1691480824.9370058-CDS-H-paniculata_contig17050:2124..25441691480824.9370058-CDS-H-paniculata_contig17050:2124..2544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17050 2125..2544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17050.3948.1prot_H-paniculata_contig17050.3948.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17050 2125..2544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17050.3948.1

>prot_H-paniculata_contig17050.3948.1 ID=prot_H-paniculata_contig17050.3948.1|Name=mRNA_H-paniculata_contig17050.3948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MNHIPTEREIAALAAMGISVVEEGGAVVVGTLIGTDAFVQQHAVTVIKEK
GTEHLACLLAHMPDEQAAVLIATKSRARKTCSLERVMDDELSNQTCTLTD
NGGLWMLENILEHPQPAEEHAVFDVSYPANRLHLLTTSDC
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mRNA from alignment at H-paniculata_contig17050:2093..2544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17050.3948.1 ID=mRNA_H-paniculata_contig17050.3948.1|Name=mRNA_H-paniculata_contig17050.3948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=452bp|location=Sequence derived from alignment at H-paniculata_contig17050:2093..2544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACAACGCCAAGACCAAGGCGGTGCCCCCAATGAACCACATCCCCACC
GAGAGGGAAATCGCTGCGCTGGCGGCGATGGGCATCAGCGTCGTAGAGGA
AGGGGGGGCTGTGGTGGTGGGTACACTCATTGGGACAGACGCATTTGTTC
AGCAGCACGCCGTCACAGTAATCAAGGAAAAGGGGACAGAGCACCTTGCG
TGCCTACTAGCGCATATGCCCGACGAACAAGCGGCGGTGCTGATCGCCAC
GAAGTCCAGGGCCCGGAAGACCTGCTCCTTGGAGAGAGTGATGGACGACG
AACTCTCCAACCAAACCTGTACACTAACCGACAATGGCGGACTATGGATG
TTGGAGAACATCCTGGAGCACCCGCAGCCAGCAGAAGAACATGCCGTCTT
TGACGTCAGCTACCCGGCGAACCGCCTCCACCTCCTGACCACCAGCGACT
GT
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Coding sequence (CDS) from alignment at H-paniculata_contig17050:2093..2544+

>mRNA_H-paniculata_contig17050.3948.1 ID=mRNA_H-paniculata_contig17050.3948.1|Name=mRNA_H-paniculata_contig17050.3948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig17050:2093..2544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCACATCCCCACCGAGAGGGAAATCGCTGCGCTGGCGGCGATGGG
CATCAGCGTCGTAGAGGAAGGGGGGGCTGTGGTGGTGGGTACACTCATTG
GGACAGACGCATTTGTTCAGCAGCACGCCGTCACAGTAATCAAGGAAAAG
GGGACAGAGCACCTTGCGTGCCTACTAGCGCATATGCCCGACGAACAAGC
GGCGGTGCTGATCGCCACGAAGTCCAGGGCCCGGAAGACCTGCTCCTTGG
AGAGAGTGATGGACGACGAACTCTCCAACCAAACCTGTACACTAACCGAC
AATGGCGGACTATGGATGTTGGAGAACATCCTGGAGCACCCGCAGCCAGC
AGAAGAACATGCCGTCTTTGACGTCAGCTACCCGGCGAACCGCCTCCACC
TCCTGACCACCAGCGACTGTATGAACCACATCCCCACCGAGAGGGAAATC
GCTGCGCTGGCGGCGATGGGCATCAGCGTCGTAGAGGAAGGGGGGGCTGT
GGTGGTGGGTACACTCATTGGGACAGACGCATTTGTTCAGCAGCACGCCG
TCACAGTAATCAAGGAAAAGGGGACAGAGCACCTTGCGTGCCTACTAGCG
CATATGCCCGACGAACAAGCGGCGGTGCTGATCGCCACGAAGTCCAGGGC
CCGGAAGACCTGCTCCTTGGAGAGAGTGATGGACGACGAACTCTCCAACC
AAACCTGTACACTAACCGACAATGGCGGACTATGGATGTTGGAGAACATC
CTGGAGCACCCGCAGCCAGCAGAAGAACATGCCGTCTTTGACGTCAGCTA
CCCGGCGAACCGCCTCCACCTCCTGACCACCAGCGACTGT
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