mRNA_H-paniculata_contig17049.3946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17049.3946.1
Unique NamemRNA_H-paniculata_contig17049.3946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17049.3946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17049contigH-paniculata_contig17049:617..4106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size672
Cds size672
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17049.3946.1prot_H-paniculata_contig17049.3946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17049 617..4106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.4236033-CDS-H-paniculata_contig17049:616..7361622929347.4236033-CDS-H-paniculata_contig17049:616..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 617..736 +
1691480824.6551516-CDS-H-paniculata_contig17049:616..7361691480824.6551516-CDS-H-paniculata_contig17049:616..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 617..736 +
1622929347.4384737-CDS-H-paniculata_contig17049:1165..13121622929347.4384737-CDS-H-paniculata_contig17049:1165..1312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 1166..1312 +
1691480824.663132-CDS-H-paniculata_contig17049:1165..13121691480824.663132-CDS-H-paniculata_contig17049:1165..1312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 1166..1312 +
1622929347.4554884-CDS-H-paniculata_contig17049:2081..21161622929347.4554884-CDS-H-paniculata_contig17049:2081..2116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 2082..2116 +
1691480824.6740172-CDS-H-paniculata_contig17049:2081..21161691480824.6740172-CDS-H-paniculata_contig17049:2081..2116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 2082..2116 +
1622929347.4718997-CDS-H-paniculata_contig17049:2657..27331622929347.4718997-CDS-H-paniculata_contig17049:2657..2733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 2658..2733 +
1691480824.6911113-CDS-H-paniculata_contig17049:2657..27331691480824.6911113-CDS-H-paniculata_contig17049:2657..2733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 2658..2733 +
1622929347.4872336-CDS-H-paniculata_contig17049:3166..32921622929347.4872336-CDS-H-paniculata_contig17049:3166..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 3167..3292 +
1691480824.7030163-CDS-H-paniculata_contig17049:3166..32921691480824.7030163-CDS-H-paniculata_contig17049:3166..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 3167..3292 +
1622929347.5051475-CDS-H-paniculata_contig17049:3938..41061622929347.5051475-CDS-H-paniculata_contig17049:3938..4106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 3939..4106 +
1691480824.7131622-CDS-H-paniculata_contig17049:3938..41061691480824.7131622-CDS-H-paniculata_contig17049:3938..4106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17049 3939..4106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17049.3946.1

>prot_H-paniculata_contig17049.3946.1 ID=prot_H-paniculata_contig17049.3946.1|Name=mRNA_H-paniculata_contig17049.3946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
RLAIAKSAELYEIVPGSHVYLSKKGENALYIVLSGSAKVEAAGLEFRSGD
TFGFRTPQCPTFHVMVDHRVVSCAERGVAAAVSYQNCMKIWPEDEEEADP
LRDGWDGVEPEAAGWESTSYDILYIFVWSPELARSILLRGGAEGEEVNVA
LEFLNFPPINGYSKELREILVSQFLLVYHERGDVFCEWTNLLPINPGDIR
ISRVHCENVVIVVSGSLKAICRR*
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mRNA from alignment at H-paniculata_contig17049:617..4106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17049.3946.1 ID=mRNA_H-paniculata_contig17049.3946.1|Name=mRNA_H-paniculata_contig17049.3946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3490bp|location=Sequence derived from alignment at H-paniculata_contig17049:617..4106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTCGCAATCGCTAAAAGTGCAGAGCTATATGAGATTGTGCCTGGGTC
TCACGTGTATCTATCCAAGAAGGGCGAGAACGCACTCTACATTGTGCTTT
CTGGTAGCGCAAAAGTCGAGGTGAGGGAAACCTACACTCCCAGTTTGTGC
ACTATACATTTAGTTATGGCATGGATTGTATGGAATTCGTAGTTGGGAAA
ACATATTATGCGTGTGTGACCGGGTTCGCTTGCATTTGACCTCTATGAAT
GTGAGATGTATCTCGAACATGGTCAGCGGGGCCATAGGTTTTGGAGTATG
TAGGAAATGTCTCAAATTATACCTTCGATGGCTAATAGAGAAAACATGCA
AGACTGTTGTGAACGCAATATTTGCTTTTCCCTGTGTTATCGCCCAGAAT
AGTAGAGGAATCCGGCAGCACAATATGCGCATTTGCACACACACGGTGCA
GCGATGCTCACAACCGTCCTGTGACGTGACTTTCCCCACACCACCATCTG
AGATAAGAGCCTCTGCGAATAGATATCCTTCTGCGTTACGGAAATTAAGG
CTGCAGGGCTGGAATTCCGCTCGGGAGACACCTTTGGCTTCCGTACGCCA
CAATGTCCCACGTTCCACGTCATGGTTGATCATCGAGTCGTGAGCTGCGC
GGAGAGAGGAGTTGCCGCTGCCGTGTCGTACCAGAATTGCATGAAGGTGA
TGCAGTAGTTTCACGCAGAGTTAGGCTCAGCTACCGCCTCAAGCAAGAAC
GCCAAGAGTGTTTCTGTCGTCGCCCTCTATGGAGTTAGGCTTCTCGGCTG
CGCATTGCGAGTATATTACCTGCGCGTCCCGCTTAGTTCGCTCTCTGATT
CCCCGTCACTGGCCCTGTCGCGATTGCGATTCAGAGTGCGTTAGTCTGTA
GAAATACCCAACAATAAATGGCCTGGCATCATGGTGTTAATTGGTAAAGT
TTTGTAGATGACACTGCAGCCTTTTAAGTCACCGTGTTCGCGCGATGCGT
TTGTAGAGATACCACAGGGCACCTTTCGAAATCTTCTGTGTGTTGTATTC
TTTTATTTTCACAAGACCAGGAGATGTGAAGGTGCTGCAATGCTTACTGC
GATCTACGAAGGTATCGAATTTTATTCGAAGATTACTCAAATGGGTCGAC
TTCGGAATACTTGAACACCTTGAGGCTTTGATGTATCGAATCTCGCGCGG
CAAAGAGGCTGACTCCTTGTCTCTCTCCGCACGGTAAGCTTCAGCAAGAA
AACAGTAGACTACGTTACGTACGTGGAATATTTTCTCCTTTGTATCATAG
GCACCGCGTAACGCGGATCTACCGAGACGCGACGCGAGATTACCTATCAC
CAATTAGATGGACAACCGAAAAGTTTGACACACCCGACCCACGATTATTT
TTCTTCCACTTCGCTTGTTCTCTGGTGTTCGAAACTTCCCCGCTAATCGC
AACGGCACGACTCAGATATGGCCTGAAGACGAAGAAGAAGCGGATCCCCT
GTTCGCTCGAAGGCACAAGAAACACGTCGCCCATAATCTGGTAAAGTTAC
AACGTCTCGAATCAACGCCAGCTCGCGATGACCATCTTAAGCAAGTGCAT
GCAGCCGTCAAAAAAATACTACCCACTCCATACACGTGTGTACAACTGTG
CTTTTTGCAGTATGTAATCCGCTCGGTTGCATCCGCAGTAAGATAACGAA
ATATCTCGCTGCTTCGAACAAGTTTTAAACTAGATCGTTATTGATTCATT
GTCCTATGATTAGTTGGCATAAGCTTTTTACACCGACCACAAGAGTCAAG
GCGGGCATTTCAGGAAGGGGGTGCATTCTGATGGGGGTAATTTTATTTTT
GATTTTCACAAAGGACAATATCTTCGTCGTTCGCCACCGGATGCTACCAC
AAAAAACTACGACAGTGGTAGTCGTATACACTAGAGAACAACCTTGATTC
CTGAATAACTCGAAACTCAAACATCATTGCTACAACAGCAGTGATGGTAA
AGAATCTCGTAGACTCCGCCATAGCAGATGCTTCGAAATAGGCGCGACGG
CTGGGATGGGGTGGAGCCGGAGGCGGCAGGCTGGGAGTCGACGTCGTACG
ATATTCTCTATATTTTCGTGTTCTTACCATGTTCATCGTGTGACACAGGG
CACAATCTGGGGAACCATGGAGATTTTCAGCTGGACCGACAGACAGATTT
CGAGAGTTGGGATTCTTTAACCGTATCGTCGACGCTGTTTTACACTCCGT
GCATGCTCCCCAGCATAGTATATCACGCGACACTGCACACGGTGTCGCTC
ACATCCAAATTTTCCCTGTCTACCAACAGCATGTTTTTGGTTTTTGACTT
TCGTCACCGTCCTATGACGAACAGATTCGAGCAAGCGTCTGCCCCGTCGC
CCCCCCGAGACGTGACGATTGAAGGACCAGGGGAGACGCTTCCCCCTCGA
GCCCATCGCCCCTCTAGCCCCGGAGCAATTGGCGATGACCCTCACCGCTA
AACCAAAAAAGTACATGCTACTCCATCATTAATGGATATAACTTTCAAAG
GTTTGGAGCCCAGAATTGGCCAGGAGCATTTTGCTACGAGGAGGAGCGGA
GGGAGAGGAGGTTAATGTTGCTCTGGAGTTTCTCAATTTTCCACCAATCA
ACGGATACTCCAAGGAGCTAAGGGAGGTGAGCTGCTGGACATTCTTCACT
GTGTTTTCTAGCGATGTTGCTAGTAGATTGGAACATGAATATCAGTACTC
TAGCAAGTACAGTGTGTATAGTTTGTGCCCAATGTATTTGGAGTTATGTT
GTGTTTGCACGAAGCAATCGTTTACTGAATAAACGCAAGGAATATAGAAC
GCTTTTGTTTACCCACTTTCGAGCTGTTGCCTGGTGTATGCAAGTGTTGA
GAGTGTACTGAATTTCATCTGATCCTTGACACCAACACACGAGCATCCTG
AAACACGATAGCACGCCGTACTACGTATGTTATAGCTATGGTTAAGTAGG
GGACGTACACAGACCCACGGTTCAAGGGCATATGAGGTAAGAAGTGTCCT
TTATCCACGAGTTTCTTGTTTCGTCCTTGGAGCTGTTTGGCACTTGGGCT
AATCGCGACGTAGTTATCTAAATACATAAAGTCTAGCGGCGTGTTCCTTT
AGTACAACTCAGTGTTATGACACTGTTGGTACATGGATGATCTAGCTCAA
CACACATCTGCACATCTCCCACCCATTGTACATATATTATCTTCAAGTTT
TTCTTTTTCCGTATTCTTATCATTACAGCTTTCTACCTGTTTTCGCGTCC
ATGTTTTGTTTCCGCTGGTCAGATATTGGTGTCACAATTCCTGCTGGTGT
ATCACGAGCGTGGGGACGTGTTTTGCGAGTGGACCAATCTTTTACCGATT
AATCCCGGCGATATTCGCATCTCTCGGGTACATTGCGAAAATGTTGTCAT
TGTGGTGTCCGGATCTCTCAAGGCAATTTGCCGGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17049:617..4106+

>mRNA_H-paniculata_contig17049.3946.1 ID=mRNA_H-paniculata_contig17049.3946.1|Name=mRNA_H-paniculata_contig17049.3946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig17049:617..4106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTCGCAATCGCTAAAAGTGCAGAGCTATATGAGATTGTGCCTGGGTC
TCACGTGTATCTATCCAAGAAGGGCGAGAACGCACTCTACATTGTGCTTT
CTGGTAGCGCAAAAGTCGAGAGGCTCGCAATCGCTAAAAGTGCAGAGCTA
TATGAGATTGTGCCTGGGTCTCACGTGTATCTATCCAAGAAGGGCGAGAA
CGCACTCTACATTGTGCTTTCTGGTAGCGCAAAAGTCGAGGCTGCAGGGC
TGGAATTCCGCTCGGGAGACACCTTTGGCTTCCGTACGCCACAATGTCCC
ACGTTCCACGTCATGGTTGATCATCGAGTCGTGAGCTGCGCGGAGAGAGG
AGTTGCCGCTGCCGTGTCGTACCAGAATTGCATGAAGGCTGCAGGGCTGG
AATTCCGCTCGGGAGACACCTTTGGCTTCCGTACGCCACAATGTCCCACG
TTCCACGTCATGGTTGATCATCGAGTCGTGAGCTGCGCGGAGAGAGGAGT
TGCCGCTGCCGTGTCGTACCAGAATTGCATGAAGATATGGCCTGAAGACG
AAGAAGAAGCGGATCCCCTATATGGCCTGAAGACGAAGAAGAAGCGGATC
CCCTGCGCGACGGCTGGGATGGGGTGGAGCCGGAGGCGGCAGGCTGGGAG
TCGACGTCGTACGATATTCTCTATATTTTCGCGCGACGGCTGGGATGGGG
TGGAGCCGGAGGCGGCAGGCTGGGAGTCGACGTCGTACGATATTCTCTAT
ATTTTCGTTTGGAGCCCAGAATTGGCCAGGAGCATTTTGCTACGAGGAGG
AGCGGAGGGAGAGGAGGTTAATGTTGCTCTGGAGTTTCTCAATTTTCCAC
CAATCAACGGATACTCCAAGGAGCTAAGGGAGGTTTGGAGCCCAGAATTG
GCCAGGAGCATTTTGCTACGAGGAGGAGCGGAGGGAGAGGAGGTTAATGT
TGCTCTGGAGTTTCTCAATTTTCCACCAATCAACGGATACTCCAAGGAGC
TAAGGGAGATATTGGTGTCACAATTCCTGCTGGTGTATCACGAGCGTGGG
GACGTGTTTTGCGAGTGGACCAATCTTTTACCGATTAATCCCGGCGATAT
TCGCATCTCTCGGGTACATTGCGAAAATGTTGTCATTGTGGTGTCCGGAT
CTCTCAAGGCAATTTGCCGGAGGTGAATATTGGTGTCACAATTCCTGCTG
GTGTATCACGAGCGTGGGGACGTGTTTTGCGAGTGGACCAATCTTTTACC
GATTAATCCCGGCGATATTCGCATCTCTCGGGTACATTGCGAAAATGTTG
TCATTGTGGTGTCCGGATCTCTCAAGGCAATTTGCCGGAGGTGA
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