mRNA_H-paniculata_contig1702.3934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1702.3934.1
Unique NamemRNA_H-paniculata_contig1702.3934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1702.3934.1 vs. uniprot
Match: A0A6H5L9Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Q0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 8.350e-32
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 2 
Query:  371 SCNNPEHAALESELNDALEEALQMEERLAAYEAAGMDDGGLVGGSGAAARLSRATEELTALQEQAATMEKERDSFEQDYLNQKDRVNELETQLEDKDQKTKE 676
            +C NPEHAALESELNDALEEALQMEERLAAYEAAG   G  + G GAAA  ++A EE+ AL EQA T+EKERD++EQDYLNQKDRV+ LETQLEDKD+K KE
Sbjct:    2 ACENPEHAALESELNDALEEALQMEERLAAYEAAGA--GAEIDGGGAAA--AKALEEIAALTEQAGTLEKERDAYEQDYLNQKDRVDNLETQLEDKDRKAKE 99
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BLAST of mRNA_H-paniculata_contig1702.3934.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.310e-29
Identity = 77/102 (75.49%), Postives = 86/102 (84.31%), Query Frame = 2 
Query:  371 SCNNPEHAALESELNDALEEALQMEERLAAYEAAGMDDGGLVGGSGAAARLSRATEELTALQEQAATMEKERDSFEQDYLNQKDRVNELETQLEDKDQKTKE 676
            +C NPEHAALESELNDALEEALQMEERLAAYEAAG   G  V G GAAA  ++A EE+ AL EQA T+EKERD++EQDYLNQKDRV+ LETQLEDKD+K KE
Sbjct:    2 ACENPEHAALESELNDALEEALQMEERLAAYEAAGAGAG--VDGGGAAA--AKALEEIAALTEQADTLEKERDAYEQDYLNQKDRVDNLETQLEDKDRKVKE 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1702.3934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9Q0_9PHAE8.350e-3274.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI68_ECTSI2.310e-2975.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1702contigH-paniculata_contig1702:13216..13891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.3928063-UTR-H-paniculata_contig1702:13215..135791622929346.3928063-UTR-H-paniculata_contig1702:13215..13579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1702 13216..13579 +
1691480824.2496846-UTR-H-paniculata_contig1702:13215..135791691480824.2496846-UTR-H-paniculata_contig1702:13215..13579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1702 13216..13579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.414577-CDS-H-paniculata_contig1702:13579..138911622929346.414577-CDS-H-paniculata_contig1702:13579..13891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1702 13580..13891 +
1691480824.2672687-CDS-H-paniculata_contig1702:13579..138911691480824.2672687-CDS-H-paniculata_contig1702:13579..13891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1702 13580..13891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1702.3934.1prot_H-paniculata_contig1702.3934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1702 13580..13891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1702.3934.1

>prot_H-paniculata_contig1702.3934.1 ID=prot_H-paniculata_contig1702.3934.1|Name=mRNA_H-paniculata_contig1702.3934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MASCNNPEHAALESELNDALEEALQMEERLAAYEAAGMDDGGLVGGSGAA
ARLSRATEELTALQEQAATMEKERDSFEQDYLNQKDRVNELETQLEDKDQ
KTKE
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mRNA from alignment at H-paniculata_contig1702:13216..13891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1702.3934.1 ID=mRNA_H-paniculata_contig1702.3934.1|Name=mRNA_H-paniculata_contig1702.3934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at H-paniculata_contig1702:13216..13891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCAAGGGACTGTCTCAGCAACGTGGGCAGCGTGTGTTATCTGCTGCAC
GCGTCTTGATACAGATTATCAAGGCCAAAAGCGCAAATCCTCAGGCACCA
ATCTATTTTTCACACCGTAAAGCAATGCGTGCAGAAGCTTGACTGCACCC
TCTGTTCAGGGCGCCTTCAAACAGACTGCTTTTCATCATTCAAACAGAAC
AGCCCAGACTGCACACAGTACATTTCGTAGGTCAGTGTAGTGGGGTACAA
GAGACAGTAGCAGTTCGCGTTGACTGTCCTCTATGTATAGTTATCGTCCC
GTACAATAGCACTGTATAGTACATCAGAATATTACCATCGCTGACCGCGA
AAGCAGCCAACAAGATGGCGAGCTGCAACAACCCTGAGCATGCGGCGCTG
GAGAGCGAGCTCAACGATGCCCTCGAAGAGGCGCTGCAGATGGAGGAGCG
CCTGGCGGCCTACGAGGCGGCGGGCATGGATGACGGTGGTCTCGTCGGGG
GGAGCGGAGCCGCGGCGAGGCTCTCGAGAGCGACCGAGGAGCTGACCGCT
CTTCAGGAGCAAGCCGCAACCATGGAAAAAGAACGAGATTCGTTCGAGCA
AGACTATCTGAACCAGAAGGATCGCGTGAACGAGCTGGAGACGCAGCTTG
AGGACAAGGACCAGAAGACAAAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1702:13216..13891+

>mRNA_H-paniculata_contig1702.3934.1 ID=mRNA_H-paniculata_contig1702.3934.1|Name=mRNA_H-paniculata_contig1702.3934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1702:13216..13891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGCTGCAACAACCCTGAGCATGCGGCGCTGGAGAGCGAGCTCAA
CGATGCCCTCGAAGAGGCGCTGCAGATGGAGGAGCGCCTGGCGGCCTACG
AGGCGGCGGGCATGGATGACGGTGGTCTCGTCGGGGGGAGCGGAGCCGCG
GCGAGGCTCTCGAGAGCGACCGAGGAGCTGACCGCTCTTCAGGAGCAAGC
CGCAACCATGGAAAAAGAACGAGATTCGTTCGAGCAAGACTATCTGAACC
AGAAGGATCGCGTGAACGAGCTGGAGACGCAGCTTGAGGACAAGGACCAG
AAGACAAAAGAGATGGCGAGCTGCAACAACCCTGAGCATGCGGCGCTGGA
GAGCGAGCTCAACGATGCCCTCGAAGAGGCGCTGCAGATGGAGGAGCGCC
TGGCGGCCTACGAGGCGGCGGGCATGGATGACGGTGGTCTCGTCGGGGGG
AGCGGAGCCGCGGCGAGGCTCTCGAGAGCGACCGAGGAGCTGACCGCTCT
TCAGGAGCAAGCCGCAACCATGGAAAAAGAACGAGATTCGTTCGAGCAAG
ACTATCTGAACCAGAAGGATCGCGTGAACGAGCTGGAGACGCAGCTTGAG
GACAAGGACCAGAAGACAAAAGAG
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