mRNA_H-paniculata_contig17.3923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3923.1
Unique NamemRNA_H-paniculata_contig17.3923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17.3923.1 vs. uniprot
Match: D7FN63_ECTSI (Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (Mouse), isoform CRA_c n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN63_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.970e-5
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 3 
Query: 1116 IVCIPCGDRLKEANVPCPLCKRKIDAVIQNF 1208
            +VC+PCG RLK+AN+ CP+CKR+ID VI++F
Sbjct:  867 VVCLPCGKRLKKANMGCPICKRRIDVVIESF 897
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN63_ECTSI5.970e-564.52Mdm2, transformed 3T3 cell double minute 2, p53 bi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:24516..28850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1846
Cds size1089
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3923.1prot_H-paniculata_contig17.3923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 24804..28381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.1168563-UTR-H-paniculata_contig17:24515..248031622929344.1168563-UTR-H-paniculata_contig17:24515..24803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 24516..24803 +
1691480823.2706113-UTR-H-paniculata_contig17:24515..248031691480823.2706113-UTR-H-paniculata_contig17:24515..24803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 24516..24803 +
1622929344.180038-UTR-H-paniculata_contig17:28381..288501622929344.180038-UTR-H-paniculata_contig17:28381..28850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 28382..28850 +
1691480823.3138695-UTR-H-paniculata_contig17:28381..288501691480823.3138695-UTR-H-paniculata_contig17:28381..28850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 28382..28850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.127916-CDS-H-paniculata_contig17:24803..251961622929344.127916-CDS-H-paniculata_contig17:24803..25196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 24804..25196 +
1691480823.278935-CDS-H-paniculata_contig17:24803..251961691480823.278935-CDS-H-paniculata_contig17:24803..25196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 24804..25196 +
1622929344.1396084-CDS-H-paniculata_contig17:25588..256481622929344.1396084-CDS-H-paniculata_contig17:25588..25648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 25589..25648 +
1691480823.2868009-CDS-H-paniculata_contig17:25588..256481691480823.2868009-CDS-H-paniculata_contig17:25588..25648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 25589..25648 +
1622929344.1524532-CDS-H-paniculata_contig17:26120..264891622929344.1524532-CDS-H-paniculata_contig17:26120..26489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 26121..26489 +
1691480823.2953064-CDS-H-paniculata_contig17:26120..264891691480823.2953064-CDS-H-paniculata_contig17:26120..26489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 26121..26489 +
1622929344.163262-CDS-H-paniculata_contig17:28114..283811622929344.163262-CDS-H-paniculata_contig17:28114..28381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 28115..28381 +
1691480823.3044074-CDS-H-paniculata_contig17:28114..283811691480823.3044074-CDS-H-paniculata_contig17:28114..28381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 28115..28381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3923.1

>prot_H-paniculata_contig17.3923.1 ID=prot_H-paniculata_contig17.3923.1|Name=mRNA_H-paniculata_contig17.3923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=363bp
MYSQERQSNEELVQEWQHVQQRKFRAAQEKQRQQNRASQKRIGRRAANAV
NAVNVIAKAGGSARGAGTVEQRGRGAGEKKRRRRKKQQAEKKENPAAVQV
ISEAQQETEQPQTSTPSISMSEDRSGIDRKATQGERHDRRAKARMKRASE
AGAARRQRLRTLVSDMQSILHVNSCTATALTEEEQATLDDDFQGQDGDVR
EMQTIGLESERGNKKNRLREQITVLLSTAGDNSSTLQEEHNRQHEEEEDD
ETLCIVCMTDARTACLVHGRTSHQARSSAFRAGIVSRRPTCRVLFARGKS
MQLSKTSCEAYASVVTNRDDGSTIAHRSMCLVRCLTTASKNGGKMSFCTQ
FNLACNRDLQIL*
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mRNA from alignment at H-paniculata_contig17:24516..28850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3923.1 ID=mRNA_H-paniculata_contig17.3923.1|Name=mRNA_H-paniculata_contig17.3923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4335bp|location=Sequence derived from alignment at H-paniculata_contig17:24516..28850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAACCAACACCGACGACCAGGAAAATCATCGGAGACCTGAAAACAA
CACTCACGAGCAACTGCACCACGCTGAGACTCCCAAAATACAGTCGGAAA
CAGAAAGAAAATGCCGCTTGGCAGAGGCAATCCGGCGCCAAAATGACAGG
GGCAGTGTAGCAAAGGAAAAGGCTGCGCAGATCCGAGCTTGGGGCCGCCG
TGTAAGGAAGGAGACACGTGTAAAGGCTGAAGCGGAGCGAGTCCTGGAAC
GGAGCCATTTGGTACGATCCGTGTCTGATGCTGTGGCAATGTACTCGCAA
GAGAGGCAAAGTAATGAGGAACTCGTTCAGGAGTGGCAACATGTGCAACA
GCGCAAATTTCGGGCAGCGCAAGAAAAGCAGCGGCAGCAGAATCGTGCCT
CGCAAAAGAGAATCGGCCGGCGAGCAGCTAATGCAGTTAATGCAGTTAAT
GTCATTGCCAAGGCGGGAGGATCGGCGAGGGGCGCGGGCACAGTAGAACA
GAGAGGGCGAGGGGCTGGGGAAAAGAAAAGGCGTAGAAGAAAGAAACAGC
AAGCTGAGAAAAAAGAGAACCCAGCGGCGGTACAGGTAATTTCGGAGGCT
CAACAAGAGACGGAGCAGCCTCAAACCTCGACTCCGAGCATCAGCATGAG
CGAGGATCGGTCCGGTATCGATCGCAAGGCGGTAAGTCCATGTGTATGTG
GTGTGACTTGTGGAGGTGATCGTGATGGTGACTATAGTGGTGATATTTAG
GGAGAAAAAAAACAAGGTACCATCCGTGTATCTTGTGTCTCTTCAGCAGC
CTGATGTGCATAATGTTTACCTGACGGTTGATGTGTGCCTGTGAAAATGA
GAGAAGGCTGGATCAATGATTGGCGGCAATGTCACACTCGGTAGCCGCAG
TGGTTGTGAGCGAGTGCCCTATATGACGTTCGCGCCCGTGAACGGTTGAT
ATCGCTATGGCCATGCCTTCTGCCCCAGGCTTGCTGTTGTAAATCCCTAT
CGATTGGGCTGTAACAACCCTCGCCTCTCACATGCATTTGACTCGATCGG
GGGTTGTCTATTTGCGCGTACAGACTCAGGGTGAGCGTCATGATCGCCGT
GCGAAGGCGAGGATGAAACGTGCGTCGGAGGCGGTAAGATGAAAATTACA
AGTAGTATATCCTTTTATATATTACAGGAAATGGCCATTCCTACTCTGGT
GCTTGCGTCTCTATGTTGTCCTTCATCGTACCAATCTGCTCGAGTTATAT
CAGGCTTGTCGTCCAAAGGCCAGGGCTGGTTTGTGGTAAAAGAGCAGACA
AAAATTGTGCGTCGTCACCGCAATGTGCGGTACACGCACACATCCCGTGT
CGTTGGAATTTTCATCACAAGGCTGTTTTGTCGCATTTCGCCCGTCAATG
TCAACATCAATGTTAACGTCAAATCCAATACCTGGCTCACCACGACAGAT
CTCTCGAGCGCTGTAATACACTTACAAGGATGGTTGTAGCCAGAGTTGGG
TTATATTTTGGTCTGAAAAGGCTCTGCCTGTCGTCGTCGGGATAACCCCA
ACACAGAATCTTACACCGGTGCGCATACTGCGTGCCGTGCTTACGGTAAA
AACAGGGGGCTGCTCGGCGGCAGCGTCTGCGTACTTTGGTGTCAGACATG
CAAAGCATTCTTCACGTGAACTCTTGTACTGCCACTGCATTAACTGAGGA
GGAGCAAGCAACTCTCGACGACGACTTCCAAGGTCAGGACGGGGACGTCC
GTGAGATGCAGACGATAGGACTCGAGAGTGAGAGGGGCAACAAGAAGAAT
CGCCTGCGAGAGCAAATAACCGTCCTTCTCTCCACGGCGGGCGACAATTC
TTCAACGTTGCAGGAGGAACACAATCGACAGCACGAGGAGGAAGAAGATG
ATGAGACGCTATGTATCGTGTGCATGACGGACGCGAGGACCGCGTGTCTC
GTCCACGGCAGGACTAGCCACCAGGTAGAGACATGGCCAGAGATGTATGC
CGCGTGTACTTTCGTATCATGTGCTGGGTTTTTGTCTGTCATGAGAGTTT
GTGTGATGCAAGGTTTGCCGCAAAGTAGTGGCCATCTTGCCTGTGTGTTG
ACCTATTTTGTGTAGCGCACTGGATTTACGTGCCACTAATAATAGAGCCA
CGACTAAGCCCATGGAGTTAGTCATATTTCAGTGTAAAGTCCTCGATCAA
CGTGCTATGATTCGCTGCGCTCTCACCTAACATGTTTTTTTCCCGACGAT
AGCGATTTATGCAAAGTTTCACCCTTAAAAAAGTCGTGCTCGACCTTGCC
AGCCTTGTAGAGGAAGTTTTCCCGCTATGCATAGAATTTCAGTGAGAAGG
GCGGGTTCTGAGTGAGTTGCCAACCTCCTGCAGTACCCCAGTTCGTTTTC
AGATCCATTTTTGTTTTGTTTCACCTATTTTTGCTGTGGTATAGTTGTAT
ACTGCCCAAACCTGCCCGACCCCTCCACGAGCCTGACTCCACCGTTGTTA
TGCCGCGGAGCGGCGAGGCACTTGCGTGATTTTAAATGCTACCAGGGCCC
GATGCGGCATCCGAAGGGTTGATGTGAAGGTTAGCGTGGGGCTCGAAGGT
GTGGTCTGGCGTGCGCTTTGTCAAAAACACGAAGCAGAATAGCACCCATT
ACAATAATCAACTGTGGATCCGAAGACGAACTGGGGTAAAGTCGCCCCTG
TTACTGGGTGTGAGTTACTTTTTGTACAGATGCCACTCCAAATCCTTTTG
CTTCTCAATTTTCCGGCAGCACCGGAGCTGCGTTCATGCTTTTTACTGTT
TACGGTACGGCGCGTGACCTCTCCGTTCATAAGTTTTTCGTATTTCTCAC
ATGTGCTGTTTGTTGGGCAGTAGATCCGACCTGAACTTGAACAAATATAA
AAAGATCAATTGGACAAAGTATTGTAAAGTGTTCCGACAATAATGCCACC
ATCACCATCGCCACCACGTGCATATTTTCGGAATTGCATATCCAACCTTG
GAACTGTGCGGGTGCGGGCGTACAACCATCTTGAAAATTCGTGGGATGTC
CGAACCATCGACTATTTAGATTCGTTTTTCGGAAGTCAGTCAAGAACAAA
TCTGAAAGGCTGACGGAGACTTCTCCACAAGGAACTTCATTATTTCTGCG
CCGGAAGCTATTTTGGAACAACGAAAAGTGTGGGGAATGAAGATCTTGTA
TAACGGTATAATCCCACAAACGTCAATCAAGGACAAACTATTTTCACACG
AGGTACTTGACAAAAAGTGGAGCGCTGCTCTCACCTAAGGGCAAACCATG
CCCACCACTTGTCTGTGCTTGATAGAGCAGCGGCCAGAACCCCTCCCCGT
GAAACATGGTAATCCTGTCGCAGGAGTACTATTTCTCTGTTTTTGAGTAG
GGATTAAAAGGAGGATACGTTAGGTGGATGGAAACCGGGGCTAACAGGGT
TGGGAAAAATTGAGGGTTCTTCACCTTAGGGATATCTGACCTGAACGGTT
TGGTCAGTTGCGGAGTGTGTTTTGGTCATCTGAGTCACACCCCCGTCGCC
GCCGCCCCGCCCCATGTTCTTTTTGTTGTAAATCCCCTCTGTTTGCAAGG
CCAGATCGTCTGCATTCCGTGCGGGGATCGTCTCAAGGAGGCCAACGTGC
CGTGTCCTCTTTGCAAGAGGAAAATCGATGCAGTTATCCAAAACTTCTTG
TGAGGCATACGCAAGTGTTGTGACAAATCGTGATGATGGTTCCACTATTG
CCCACCGATCGATGTGCTTGGTACGTTGTCTTACTACTGCTTCGAAAAAC
GGGGGCAAAATGTCCTTTTGTACCCAATTTAATTTAGCGTGCAACCGAGA
TCTACAAATACTCTAAAAGCAAGACGAATGGCCGTTTAGCACCCTCTACT
TTGCAACAAGCTTGACTTTTGTTCTCGTAGTGAGAAAGTGAGTTTCATGT
CGGATGCTTCTTAGCCGGCATAGGGGATGCCGCCGATTCCACGATAGAGT
ATTTATTGTCGAGCACGTCGAAATTGATTCGGTTTAAGTAAAACTATGAA
GATAAATAGGTGGGGGGGCGCTGAAGTGTGGTCGTTTTCGTTGCGTTATA
GCTTGAGCAGGCGAAACAACAGAAACCAGTGCATACAGGTTTGTTTGCGC
TCAGTTGCACGCACTTGTTCCAGCAAAGGAATAACGACAGAGGAGAGGGT
TGAAGTTCTATGGTCCACAACAGGACGCAGTGAAGTGAAACATTTTGGCA
GATGATCGGGCGTTTCGTGGCCAGAGTTGAAACCTTTGAAAGGGGTTTTC
AAAGCGTGTATCTCGATGTGCATATTTTTCCAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig17:24516..28850+

>mRNA_H-paniculata_contig17.3923.1 ID=mRNA_H-paniculata_contig17.3923.1|Name=mRNA_H-paniculata_contig17.3923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2178bp|location=Sequence derived from alignment at H-paniculata_contig17:24516..28850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCGCAAGAGAGGCAAAGTAATGAGGAACTCGTTCAGGAGTGGCA
ACATGTGCAACAGCGCAAATTTCGGGCAGCGCAAGAAAAGCAGCGGCAGC
AGAATCGTGCCTCGCAAAAGAGAATCGGCCGGCGAGCAGCTAATGCAGTT
AATGCAGTTAATGTCATTGCCAAGGCGGGAGGATCGGCGAGGGGCGCGGG
CACAGTAGAACAGAGAGGGCGAGGGGCTGGGGAAAAGAAAAGGCGTAGAA
GAAAGAAACAGCAAGCTGAGAAAAAAGAGAACCCAGCGGCGGTACAGGTA
ATTTCGGAGGCTCAACAAGAGACGGAGCAGCCTCAAACCTCGACTCCGAG
CATCAGCATGAGCGAGGATCGGTCCGGTATCGATCGCAAGGCGATGTACT
CGCAAGAGAGGCAAAGTAATGAGGAACTCGTTCAGGAGTGGCAACATGTG
CAACAGCGCAAATTTCGGGCAGCGCAAGAAAAGCAGCGGCAGCAGAATCG
TGCCTCGCAAAAGAGAATCGGCCGGCGAGCAGCTAATGCAGTTAATGCAG
TTAATGTCATTGCCAAGGCGGGAGGATCGGCGAGGGGCGCGGGCACAGTA
GAACAGAGAGGGCGAGGGGCTGGGGAAAAGAAAAGGCGTAGAAGAAAGAA
ACAGCAAGCTGAGAAAAAAGAGAACCCAGCGGCGGTACAGGTAATTTCGG
AGGCTCAACAAGAGACGGAGCAGCCTCAAACCTCGACTCCGAGCATCAGC
ATGAGCGAGGATCGGTCCGGTATCGATCGCAAGGCGACTCAGGGTGAGCG
TCATGATCGCCGTGCGAAGGCGAGGATGAAACGTGCGTCGGAGGCGACTC
AGGGTGAGCGTCATGATCGCCGTGCGAAGGCGAGGATGAAACGTGCGTCG
GAGGCGGGGGCTGCTCGGCGGCAGCGTCTGCGTACTTTGGTGTCAGACAT
GCAAAGCATTCTTCACGTGAACTCTTGTACTGCCACTGCATTAACTGAGG
AGGAGCAAGCAACTCTCGACGACGACTTCCAAGGTCAGGACGGGGACGTC
CGTGAGATGCAGACGATAGGACTCGAGAGTGAGAGGGGCAACAAGAAGAA
TCGCCTGCGAGAGCAAATAACCGTCCTTCTCTCCACGGCGGGCGACAATT
CTTCAACGTTGCAGGAGGAACACAATCGACAGCACGAGGAGGAAGAAGAT
GATGAGACGCTATGTATCGTGTGCATGACGGACGCGAGGACCGCGTGTCT
CGTCCACGGCAGGACTAGCCACCAGGGGGCTGCTCGGCGGCAGCGTCTGC
GTACTTTGGTGTCAGACATGCAAAGCATTCTTCACGTGAACTCTTGTACT
GCCACTGCATTAACTGAGGAGGAGCAAGCAACTCTCGACGACGACTTCCA
AGGTCAGGACGGGGACGTCCGTGAGATGCAGACGATAGGACTCGAGAGTG
AGAGGGGCAACAAGAAGAATCGCCTGCGAGAGCAAATAACCGTCCTTCTC
TCCACGGCGGGCGACAATTCTTCAACGTTGCAGGAGGAACACAATCGACA
GCACGAGGAGGAAGAAGATGATGAGACGCTATGTATCGTGTGCATGACGG
ACGCGAGGACCGCGTGTCTCGTCCACGGCAGGACTAGCCACCAGGCCAGA
TCGTCTGCATTCCGTGCGGGGATCGTCTCAAGGAGGCCAACGTGCCGTGT
CCTCTTTGCAAGAGGAAAATCGATGCAGTTATCCAAAACTTCTTGTGAGG
CATACGCAAGTGTTGTGACAAATCGTGATGATGGTTCCACTATTGCCCAC
CGATCGATGTGCTTGGTACGTTGTCTTACTACTGCTTCGAAAAACGGGGG
CAAAATGTCCTTTTGTACCCAATTTAATTTAGCGTGCAACCGAGATCTAC
AAATACTCTAAGCCAGATCGTCTGCATTCCGTGCGGGGATCGTCTCAAGG
AGGCCAACGTGCCGTGTCCTCTTTGCAAGAGGAAAATCGATGCAGTTATC
CAAAACTTCTTGTGAGGCATACGCAAGTGTTGTGACAAATCGTGATGATG
GTTCCACTATTGCCCACCGATCGATGTGCTTGGTACGTTGTCTTACTACT
GCTTCGAAAAACGGGGGCAAAATGTCCTTTTGTACCCAATTTAATTTAGC
GTGCAACCGAGATCTACAAATACTCTAA
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