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Homology
BLAST of mRNA_H-paniculata_contig1694.3885.1 vs. uniprot
Match: A0A6H5J6J5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6J5_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.610e-8 Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0
Query: 125 RSFVQKIKTIPIGDWKRAMRELDLAEQRVLLLAQEDGRGRIAGTLHMYGICLSFMAKGGRWREAITILQKMRTAGVAPDTYCLNSA 210
++FVQK++ + DW+ +REL +AE+ + RI T MY C+S MAK RW EA+ ILQ+MR G+ P++YC++SA
Sbjct: 43 KNFVQKVQCMRPTDWRGVLRELQIAEEAS---DAQPSESRI--TTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSA 123
BLAST of mRNA_H-paniculata_contig1694.3885.1 vs. uniprot
Match: A0A6H5KYW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW8_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.210e-7 Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0
Query: 128 VQKIKTIPI--GDWKRAMRELDLAEQRVLL-------------LAQEDGRGRIAGTLHMYGICLSFMAK--GGRWREAITILQKMRTAGVAPDTYCLNSALDACGSAGEVERGLELLTQGR 231
+ K+ T+P DW+ A+R LD EQ+ L+++DG +Y I + ++ RW+EA +L+ M+ GV D Y LNSAL ACGSAG+VE L LLT+ R
Sbjct: 175 IAKLLTLPRRRNDWREALRVLDDVEQQAAARGEASTRFWCRQGLSRDDGE---RARTRVYNIVMDILSSRNSSRWQEAFMLLETMQERGVTTDLYTLNSALKACGSAGQVELLLALLTEMR 292
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 835..909
e-value: 9.5E-17
score: 63.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 308..427
e-value: 1.0E-30
score: 108.5
coord: 602..698
e-value: 1.8E-19
score: 71.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 137..307
e-value: 1.6E-33
score: 118.4
coord: 917..1094
e-value: 2.5E-43
score: 150.6
coord: 699..803
e-value: 2.6E-25
score: 91.4
coord: 428..584
e-value: 5.4E-45
score: 156.0 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 380..413
e-value: 1.7E-4
score: 19.6
coord: 346..379
e-value: 8.3E-4
score: 17.4
coord: 706..738
e-value: 0.002
score: 16.2
coord: 452..486
e-value: 1.0E-4
score: 20.2
coord: 776..809
e-value: 2.9E-5
score: 22.0
coord: 523..555
e-value: 8.9E-7
score: 26.7
coord: 915..948
e-value: 1.0E-6
score: 26.5
coord: 880..910
e-value: 1.6E-4
score: 19.6
coord: 488..521
e-value: 1.6E-6
score: 25.9
coord: 171..204
e-value: 2.5E-5
score: 22.2
coord: 951..984
e-value: 2.4E-5
score: 22.2
coord: 558..591
e-value: 5.2E-7
score: 27.5
coord: 275..307
e-value: 1.3E-5
score: 23.1
coord: 240..273
e-value: 0.0021
score: 16.1
coord: 845..879
e-value: 1.9E-5
score: 22.5
coord: 671..695
e-value: 9.9E-5
score: 20.3
coord: 311..343
e-value: 4.4E-6
score: 24.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 842..890
e-value: 3.8E-12
score: 46.2
coord: 448..496
e-value: 1.1E-8
score: 35.2 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 705..735
e-value: 0.022
score: 15.0
coord: 671..695
e-value: 0.0017
score: 18.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 366..426
e-value: 2.3E-8
score: 34.0
coord: 261..320
e-value: 3.0E-8
score: 33.6
coord: 761..821
e-value: 2.4E-6
score: 27.5
coord: 543..601
e-value: 1.8E-9
score: 37.5
coord: 191..250
e-value: 0.0074
score: 16.3 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 203..237
score: 7.256 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 485..519
score: 11.389 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 913..947
score: 10.819 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 597..632
score: 7.53 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 413..448
score: 8.21 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 520..554
score: 10.808 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 343..377
score: 9.471 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 773..807
score: 10.907 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 983..1017
score: 11.17 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 668..698
score: 8.572 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 703..737
score: 10.863 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 238..272
score: 10.106 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 449..479
score: 8.78 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 948..982
score: 11.531 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 878..912
score: 11.246 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 555..589
score: 11.981 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 738..772
score: 9.394 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 633..667
score: 8.791 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 273..307
score: 11.937 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 1053..1087
score: 7.991 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 1018..1052
score: 7.18 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 843..877
score: 11.959 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 168..202
score: 9.536 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 808..842
score: 9.712 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 308..342
score: 10.084 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 378..412
score: 11.498 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 919..1080
e-value: 3.3E-11
score: 43.0 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 839..979
coord: 281..426
coord: 415..599
coord: 703..843
coord: 951..1081
coord: 611..695
coord: 164..307 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..8 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 31..1097 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 9..30 |
| None | No IPR available | TMHMM | TMhelix | | coord: 7..29 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig1694.3885.1 ID=prot_H-paniculata_contig1694.3885.1|Name=mRNA_H-paniculata_contig1694.3885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1098bp
MVAPPRWHVYLWCTFALFPMNGIAFVPVVIPSETVFSSSHAHQIQHVGWS
PPQLKVCPRRVISSAADTEIATDGSGVGTSQASEIDARRASGALGVIRRA
PATSVEGNRHSRKSNSSREVFQIHRSFVQKIKTIPIGDWKRAMRELDLAE
QRVLLLAQEDGRGRIAGTLHMYGICLSFMAKGGRWREAITILQKMRTAGV
APDTYCLNSALDACGSAGEVERGLELLTQGRKWRVQFDLVTYNIAISLCA
KGLRYKSALALLREIPRVGLSPDLFSYNGALSACAKVGQWKQAYTLLREM
RAVGISPLTLSYNSAIAACSKAGEWEMALSLLREMAKVGVARDACSYNTC
ITACGYNLEWEMSLALLREMPDTGIAPDVISYNSAMSACCSCRNVEQVLI
LLREMPTAGITPNLNSYVSALTACGKKHGYGKQAIDLLREIPTLGIAPDT
MAYNLAIKACGNDGRWVQAASLLREMPKTAGLSPNAATYTLAITACGQCD
RWEEALSLLREMQAADLPPDTNCYNMAIQGCVKGGNWEQAVEILREMRTA
NVAVDPSTYHHALRACGNGGQWEKAVELLREMPAAGISPNVVTYNLALAA
CKITVSTSAGNSGQAEQAVDLLREMPEAGVTPNLLSYKTAMFVCGDAGQW
QQALALLRETADLGITPDGGSYCAVIVSCVRGGQWDKAVDLLREMPTTVG
NLDHFSFSSCISAIARDGQWEQAVALLRELPKAGIPPTLASYRTAILGCK
SAGQWELAVALLREMPPAGIIPDASVYSAAMSACANAHKWEHAVALLREM
PAAGVAPNIFCYNAGVTACGNSGQLDLALCLLAEMTTVGVAPDVVSYNAA
IEACRGSGRLETALALLRKMPKAGVRPDSFTYTAVISACADSRKWRQAVG
LLREMGEAGVPAHLYCYNAAIMACGKSREWEQALTLLREMPAAGVPPDQR
TYNMAILACTNAGKWDQGLRLLREMAGLGISPDVISYGAVVTACKGKGQN
EQAVELLQEMVKEGIVPTQQCYAWAINALGTSEGWVSAVALLREMPLTGV
EPDEACYASAVKACERDGKDEQAKALLEEMAVLNLRRGAEAIVTAST* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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