prot_H-paniculata_contig1694.3884.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1694.3884.1
Unique Nameprot_H-paniculata_contig1694.3884.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length593
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1694.3884.1 vs. uniprot
Match: A0A813I7J5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I7J5_POLGL)

HSP 1 Score: 66.6 bits (161), Expect = 7.100e-8
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:  213 RWREALNIFHNMRANGVEHTTFSVACALNACAKAGEWEPALKLLEEKQEEIELNAVCYNAAITACGIGRQPERGLRLLRDMPKFGVVPDIYS 304
            +W  A  +  N+R +G    + S+A AL A A    W  A+ LL++    ++LN + +NAAITACG+GR+ +R L LL++     + PD+ +
Sbjct:  214 QWALASELLENLRTSGGRPDSISLALALRALANGEHWAMAVSLLQDAGMTLKLNVIHFNAAITACGMGRRCDRALGLLQEAKLQHLQPDVVT 305
[Close]
BLAST of mRNA_H-paniculata_contig1694.3884.1 vs. uniprot
Match: A0A812Z1W7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Z1W7_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-5
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 0 
Query:  201 YHSCMSALGKYGRWREALNIFHNMRANGVEHTTFSVACALNACAKAGEWEPALKLLEEKQEEIELNAVCYNAAITACGIGRQPERGLRLLRDMPKFGVVPDIYS 304
            + + + A  + G+W  AL++F    + G    + S++  L AC  +GEWE AL+L   +Q+ +E +  C+ A I++C +       L LL +MP+  + PD+ S
Sbjct:  490 FDAAIGACARVGQWLPALSVFEEAMSVGKAAAS-SLSFVLTACRTSGEWELALQLF--RQQPLEPDLDCFRAVISSCQLQAAWRESLALLEEMPRRRLGPDVVS 590
[Close]
BLAST of mRNA_H-paniculata_contig1694.3884.1 vs. uniprot
Match: A0A813K142_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K142_POLGL)

HSP 1 Score: 58.9 bits (141), Expect = 2.920e-5
Identity = 33/103 (32.04%), Postives = 52/103 (50.49%), Query Frame = 0 
Query:  201 YHSCMSALGKYGRWREALNIFHNMRANGVEHTTFSVACALNACAKAGEWEPALKLLEEKQEEIEL--NAVCYNAAITACGIGRQPERGLRLLRDMPKFGVVPD 301
            Y + M   GK G+W+ AL    +M    +E  + SV  A+ AC+ + +W+  L+LL + Q  +E   N   Y A + AC    QPE  L +L +  + G+  D
Sbjct: 1549 YEATMVLSGKAGQWQWALKALEDMPKLSLEKDSTSVVAAITACSLSLQWQKGLELLADAQWGLEFGPNVEVYRAVVCACQEAEQPETTLAILSEARERGISAD 1651
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1694.3884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A813I7J5_POLGL7.100e-835.87Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A812Z1W7_9DINO1.390e-530.77Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813K142_POLGL2.920e-532.04Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 261..402
e-value: 7.5E-37
score: 129.3
coord: 189..260
e-value: 3.3E-13
score: 51.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 418..573
e-value: 2.5E-28
score: 101.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 338..371
e-value: 6.2E-5
score: 20.9
coord: 444..474
e-value: 1.5E-6
score: 26.0
coord: 200..230
e-value: 1.4E-6
score: 26.1
coord: 268..302
e-value: 3.1E-5
score: 21.8
coord: 409..442
e-value: 0.0025
score: 15.9
coord: 375..406
e-value: 3.7E-5
score: 21.6
coord: 303..327
e-value: 3.8E-5
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 266..312
e-value: 1.3E-7
score: 31.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 199..229
e-value: 1.2E-4
score: 22.1
coord: 240..259
e-value: 0.84
score: 10.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 359..414
e-value: 1.8E-4
score: 21.5
coord: 428..489
e-value: 5.3E-7
score: 29.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 406..440
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..300
score: 10.139
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 197..231
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..262
score: 7.048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 371..405
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 476..510
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 336..370
score: 9.142
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 301..335
score: 10.49
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 441..475
score: 10.797
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 199..372
coord: 354..538
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..592
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.745

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1694contigH-paniculata_contig1694:2943..6770 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1694.3884.1mRNA_H-paniculata_contig1694.3884.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1694 2447..7347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1694.3884.1 ID=prot_H-paniculata_contig1694.3884.1|Name=mRNA_H-paniculata_contig1694.3884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=593bp
MIMLLHAHQALVFLVVAGLPASLAFTAPNPASVVCEFTRPEKSARSAAMP
GQSRECGYRNSCTGITRGVAVSIPSAIVSRFPPGFGRKTVFAAATEGSMS
ATTSSGQKMDSISTLESRTEVAREQGEEETSKEEYGVTFDLERYSRSFVE
KIMTMARVNKRNWRPILTELEAAQAELKLAAVTAEASGASSGEWRMTDFM
YHSCMSALGKYGRWREALNIFHNMRANGVEHTTFSVACALNACAKAGEWE
PALKLLEEKQEEIELNAVCYNAAITACGIGRQPERGLRLLRDMPKFGVVP
DIYSYNIVVRAFGQNGQWEEAIALLREAGGIGIAVDDICYCAVIKACGEA
LHWEKALTLFREIPSKGVRYNSALYRSIIKACGRCGQWQLSMALLREMRS
KGNRPTTRVYTTTLDVLRTNGQWQLALSLFREMPDAGVKYDCFSFGAIIS
ACSQAGEWETALGLLREMPEWGCVQTAYCYSFAISACGDSGNWELAVALL
REVPQARLNEPCYTNALKACEEAGQWEEARNIEAEMLNSVENRRQERGED
IDEGKICVAGKTVEDSVVHLQSTRRAFFPPMRDRTPGSWRVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat