mRNA_H-paniculata_contig16922.3877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16922.3877.1
Unique NamemRNA_H-paniculata_contig16922.3877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: D7FN47_ECTSI (Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN47_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 5.870e-270
Identity = 405/568 (71.30%), Postives = 464/568 (81.69%), Query Frame = 1
Query:    1 GAAANPNGGSDLEGGDLVSWMNCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHSKAVDHLEVATALAPDLTQAHELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLVQLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPPRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGS-ADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAPTMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGG-----NSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIVLEAVPQERWSTIFL 1686
            GAA++PN G++L+  +LVSW+NCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARA+ELS +GAFDKA SLYERAVN EETAERHVLL EALVLAER+ EALWHY RAA+LYDDR+YKV+ L+SLGQVQTEEG   DAV+TY QVL LQ+ EDPDEVADAH QVA SLLDS  HS+AV HLE+ATAL PDLTQA ELLA+TLRDMGSVEEA+R+YK I AQR+TDIGTLVQLGYAYHELCDFSQALA YKKARSSP+KAAEMDYLTAALHSKS RP RAP AY+ADLFDLE RK+ F +S+ +RT+      S +   P  LAE +++  DRGMFYDVHGLIFD VAP M++MIE ALGLPT+       G   R      L+WLDILDLGCG+G +G +L++LAN+ITGVDLSE AIKHA R   YDS++  D + V   MLPNS DLVVA+D+VPYFGDL DL  A++ V+RPGGLVAFN D LD  +DGSGG     N   ++L+FTGRWSHRR YV Q+ AAAGLS+LG+RVVKGRTRLVS AAGEIVLEA PQER +TIFL
Sbjct:   44 GAASSPNAGAELDNAELVSWLNCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARALELSEDGAFDKAASLYERAVNIEETAERHVLLGEALVLAERKGEALWHYGRAADLYDDREYKVSTLVSLGQVQTEEGYSDDAVETYLQVLSLQQDEDPDEVADAHVQVAMSLLDSHNHSEAVGHLELATALVPDLTQAQELLANTLRDMGSVEEAIRQYKSIIAQRSTDIGTLVQLGYAYHELCDFSQALATYKKARSSPTKAAEMDYLTAALHSKSLRPSRAPTAYVADLFDLEVRKNGFLESQAKRTALASAEDSDSSESPGPLAEARRSNGDRGMFYDVHGLIFDRVAPNMRSMIEAALGLPTD-------GLGRR-----GLQWLDILDLGCGRGTMGSELKQLANFITGVDLSERAIKHALREGSYDSIQHGDAIAVVNTMLPNSFDLVVAADMVPYFGDLGDLFRAIAAVTRPGGLVAFNADALDAIDDGSGGANAGGNVRAFDLKFTGRWSHRRKYVTQSVAAAGLSVLGVRVVKGRTRLVSTAAGEIVLEAAPQERRTTIFL 599          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: F0XXG5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXG5_AURAN)

HSP 1 Score: 294 bits (753), Expect = 3.590e-82
Identity = 228/641 (35.57%), Postives = 303/641 (47.27%), Query Frame = 1
Query:   58 WMNCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHS---KAVDHLEVATALAPDLTQAHELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLVQLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPPRAPAAYLADLFDLEARKS--------------------------------------------AFSQSEMQRTSRTILGGS--ADNFP--ASLAEGKKAGVDRG------------------------------------------------MFYDVHGLIFDD-VAPTMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVL--DGEEDGSGGNSWP-----------------YELRFTGRWSHRRGYVMQTAAAAGL-SLLGMRVVKGRTRLV 1620
            + NCEC FSL LV LLAALPFN++     Q+ E++V RA EL  +GAF  A +LY+RAV+ EET + HV LAE LV   R  +A+ HYERAA LYDD + +V AL S  ++  E G   +AV  Y +VL L       EVADAH Q+A   L +G       AV HL  AT +AP L  AH LLA   RD+G  E A+   + +   R  D   L  LG A+ EL  F Q++  Y+KA +    A ++ Y  AAL  +   PPRAP +Y+  LFDL +R+                                             + S++ +  T   IL G   AD     +S+ E  KA  +                                                  +F  VHGL+FDD +   +   +  AL     +VDG + G           +WLD+L+LGCG G  G+ L  LAN +  VDLS  A+  A+  R YD +++ + V+ ++ +LP+S DLVVA D VPY GDL+D   AV++V RPGGL  FN DVL  DG E GS   +                   Y L FTGRW HR  YV   A A G  S+    ++K  TRLV
Sbjct:   33 FFNCECVFSLFLVALLAALPFNINAGYFRQSRESFVMRAEELFSDGAFGTAAALYQRAVDAEETPDGHVFLAETLVRVARVPDAIAHYERAAALYDDARERVAALASAARLHVERGSAAEAVAAYVRVLELDPGLRSPEVADAHVQLAAYSLGAGSRGGLYAAVGHLRRATEIAPTLAAAHLLLADGYRDLGLPEHAIESLRSVVKYRPRDAAGLSGLGAAHLELGHFKQSVNAYRKAHALAPAATDVKYALAALLGEPVVPPRAPPSYVEALFDLRSRRGFLRADAARGPPPPGWDLAGLEALRNASDAPADAKRRKKKKDAPRSASEATVLETISAILTGDKGADEVQRFSSVEEAIKAVRENATAAQRPXXXXXXXXXXXXXXXXXXXXXANPNAKAPLPPLNGTVQDEPHLFAQVHGLLFDDQLLDVVLETLRSAL-----VVDGDADGGG---------RWLDVLELGCGDGVAGQHLRTLANRLHCVDLSAGALAVAEARRAYDVLERGEFVSTARALLPDSQDLVVAVDAVPYLGDLADFFGAVASVLRPGGLAIFNTDVLTEDGLEPGSPKKARDKAAESEGEAAAEPGTIDYRLAFTGRWQHRVKYVTGLARAHGFASVKPTMLLKVETRLV 659          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: T0PZH9_SAPDV (Methyltransf_11 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PZH9_SAPDV)

HSP 1 Score: 237 bits (605), Expect = 7.080e-66
Identity = 179/555 (32.25%), Postives = 273/555 (49.19%), Query Frame = 1
Query:   52 VSWMNCECFFSLVLVGLLAALPFNLH-TQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAV---DTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHSKAVDHLEVATALAPD---LTQAHELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLV--QLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPP-RAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAPTMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIVLEAVPQERWSTIFL 1686
            + W+NCECF SL+LVG+L ALPFNLH T++L+Q+ ETY+ +A E+   GA D A  LYERA+  +E A  H  LA+AL    R N+AL HY     L +  + KV +L+S+G +  + G    AV   DT   +L   +     E+ + H ++A +    G++ +A+     AT+L      + + +  + H    +G ++ AV   K   A+  +   +L   +L YAY E  D+ +      +  +  S   E  Y+ AA H   F P  RAP  Y++  FD+ A +S    S+           + D+F A              F  +HGL F D APT    I E L     +  G                WLDI+D G G G   R  + LANYI G+DLS  +++ A+R+ +YD ++  D++TV+  +   S D+V+A +  PYFGDL  +      + R GGL+  N+D LD  E      + PY LRFTGR++H   Y+ + AA   L +    V+     +    AG +V  + P+   S ++L
Sbjct:   70 IGWLNCECFLSLLLVGVLVALPFNLHSTKDLLQSRETYLFQAAEMVKVGACDDAIMLYERALVVQENAFIHNQLADALSKCGRTNDALDHYLSGIRLEETHRRKVPSLISMGDLYQKIGEYALAVKSFDTVVLILGDSKEAKSSELGEIHMKLAKAATGLGDYEQALRAYASATSLVSGNALVAEVYYRMGHCASILGRMDVAVSSLKKAAAKAPSSQKSLYLHELAYAYFESGDYEKGNDGLSRLFAMQSMYPEDRYVKAAFHDHGFPPTHRAPTQYVSTTFDMHAHRSVHLASD-----------AFDSFVA--------------FRQLHGLFFVDDAPTR---IAEVLQAKLGVTPGDH--------------WLDIVDFGTGAGVAVRPFQPLANYILGIDLSAASVELARRSGLYDELQVGDLLTVTATLPTTSFDVVLAMNSAPYFGDLRPVFERAQRLLRVGGLLCINIDQLDDNE------AAPYTLRFTGRYAHAPEYLTELAAEMHLEVFHHEVLYDVQSVGQSVAGSVVALSHPRTVASDLYL 576          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A024U3B7_9STRA (Methyltransf_25 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3B7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 5.530e-64
Identity = 170/527 (32.26%), Postives = 256/527 (48.58%), Query Frame = 1
Query:   43 GDLVSWMNCECFFSLVLVGLLAALPFNLH-TQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHSKAVDHLEVATALA-PDLTQA--HELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLV--QLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPPRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAPTMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKR-TRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVK 1602
            GD   W NCECF SLVLVG+L ALPFNLH T++L+Q+ +TY+ +A+EL   G+ D A +LYERA+  EE+A  H  LA+AL    R  EAL +Y     L +    KV +L+++G +  ++   + A  T+  ++ + + +   ++ +A+ ++A   +     S A  H   A+ L   D  QA  H  +      MG +  A+  +K+  A+ TT   +L    L YAY E    +Q         +SPS   E  Y+ A+     +   R+P  Y+A LFD+ A          QR ++       D F                   +HGL+F+   P   N I +AL     + DG                WLD++DLGCG G     L  L+N++ G+DLS  +I++A+  T +YD +   D + V  G+   S D+VVA + +PYFGDL  +      + RP   VAFNVDV   ++D    +   + LRF+GRW H   YV +     G  LL    V+
Sbjct:   62 GDGGGWFNCECFLSLVLVGVLVALPFNLHSTKDLLQSRDTYIVKAVELMKVGSCDDAVNLYERALIVEESAMIHHQLADALTQCGRPKEALGYYLSGIRLEESTHRKVPSLMAVGDLFLKQSDYNMATRTFETIVSILQDDPTKDLVEAYMKLAKVDMSLRRLSAAYSHYTAASDLIIGDSMQAEVHYRMGQCALIMGKLPLAIENFKVAAAKGTTSQKSLFTHSLAYAYLEHGMLAQGNDELAALFASPSMYTEERYIRASFQDHQYPSGRSPTQYIAQLFDIHA----------QRITQPPPANHVDTFR-----------------QLHGLLFESGVP---NAIAKALMSKIGISDGDH--------------WLDVVDLGCGSGHAMSFLRSLSNFVLGIDLSPLSIENARNLTNMYDDLHVGDFLDVGGGLPDASYDVVVAMNSLPYFGDLRQVFELAHRILRPKAFVAFNVDVRQNDDDN---DQQDFSLRFSGRWQHSDEYVKRVLERHGFELLHQEQVE 541          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A7R9YDF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDF8_9STRA)

HSP 1 Score: 229 bits (583), Expect = 9.290e-64
Identity = 166/464 (35.78%), Postives = 243/464 (52.37%), Query Frame = 1
Query:    1 GAAANPNGGSDLEGGDLVSWMNCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAE--RRNEALWHYERAANLY-DDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHSKAVDHLEVATALAPDLTQAHELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLVQLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPP----RAPAAYLADLFDLEARKSAFSQSEMQRTSRTILG-GSADNFPASL----------------AEGKK------------AGVDRGMFYDVHGLIFDDVAPTMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIY 1284
            GA+AN    ++ E  DLVSW+NCEC  SL+LVG+LAALPFNL + + + T E +V RA +    GA DKA +LY+RAV+ EETAE H+ LAE L   +  R ++A+ HYERAA LY +D + ++    S+G++ T+  RP  AV++Y++VL   +  DP EVA+A+ Q+  SLLDS    +A++HL   T L      A   +A T RD+G+ E+AV+ Y+ +   R  D   L  L + Y               A +    AAE+DY    L S S  P     RAP AY++ +FDL  R+ +F ++     +    G G+A   P +                 A+GK             A      F    GL F +V+  +++ +E+AL +     DG                WLD+LDLGCG G++G+    L+N + GVDLS+ AI  A++T +Y
Sbjct:   35 GASANSAANAE-ELDDLVSWLNCECLVSLLLVGVLAALPFNLQSNDFLNTRENFVTRAEDYYKSGALDKAAALYDRAVSVEETAEGHLYLAETLAHPDLNRLHDAIRHYERAAELYHEDEEERIGIWKSVGKLYTDVDRPDLAVESYQKVLDAYDDADPAEVAEANLQLGLSLLDSHRFHEALEHLTTVTKLKSANELAQLSIADTQRDLGNTEKAVQGYRKVMKHRPRDFTALTGLAFTYXXXXXXXXXXXXXXXALAVNPSAAEVDYALKTL-SPSGVPASNLKRAPPAYVSYIFDLAGRRKSFLENPNPAAAGAAAGTGAASEAPGAXXXSAVEDGTGTAAGATAKGKSRPPLSIHEAVDHAAAAADKFDLAFGLAFQNVSVQIRDCVEDALQM--KAADG--------------WHWLDVLDLGCGSGQIGQAFRGLSNRVIGVDLSKVAISMARKTWLY 480          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A6G0WWW8_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWW8_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.900e-62
Identity = 166/555 (29.91%), Postives = 277/555 (49.91%), Query Frame = 1
Query:   52 VSWMNCECFFSLVLVGLLAALPFNLHTQ--ELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSLLDSGEHSKAVDHLEVATAL-APDLTQA--HELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLV--QLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRPPRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAP-TMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTR-IYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIVLEAVPQERWSTIFLF 1689
            V W+NCEC  SL+L+G+L ALPFNLH    +L+Q+ + Y+ +A+E+   GA D A  LYERA+  +++A  H  +A+AL    + +EAL HY  A +L +  + KV +L+++G +  +      A  ++  ++ +   E   ++ +A+ ++A   +     S A  H   A+ L   D  QA  H  + H    MG ++ A+  +KI  A+ +    +L    L YAY E    ++      +  S+ S   E  Y+ A+     +   RAPA Y++ LFDL A +S                    +FP +L            F  +HG++F   AP  +   ++E +G+               EGD    +WLD++DLGCG G   +    L+NY+ G+D+S  ++++A+R   +YD +K  D++ V   +  +S DLV+A + + YFGDL  +   V  + RPGG  AFNVD  +  ED +G     + LRF+GRW H   Y+ +  +  G +L+    ++  T+    A GE +      + +S ++LF
Sbjct:   56 VGWLNCECVLSLLLIGVLVALPFNLHHTKVDLIQSRDNYIVKAVEMVKVGACDDAVMLYERALVVDDSAHIHNQMADALSQCGKTSEALAHYMFAIHLEETNKRKVPSLMAIGDLYLKNMNYPMASKSFESIVSILRDEPTTDLVEAYIKLAKVDVGRRSFSAAYSHYTAASDLIVGDTMQAEVHYRMGHCALVMGKLQLAIDNFKIACAKASPAQKSLFVHSLAYAYLEHGMIAKGNQELDQLFSTNSMYTEERYIRASFQDHHYSSGRAPAQYISQLFDLHAHRS--------------------DFPNNLDS----------FLQLHGILFVQSAPKAVSTALQEKIGVS--------------EGD----RWLDVIDLGCGSGSSMQYFRSLSNYVLGIDVSPISVENARRRLDMYDDLKIGDILDVGSTLPDSSCDLVLALNTLQYFGDLRQIFQLVQRLLRPGGTFAFNVDAFN--EDANGHQ---FSLRFSGRWKHDIAYISELGSHFGFALIHSERIED-TQPFQQANGEPIRRVSDGKAFSDVYLF 556          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A1V9ZV36_9STRA (Methyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV36_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.660e-59
Identity = 173/558 (31.00%), Postives = 273/558 (48.92%), Query Frame = 1
Query:   52 VSWMNCECFFSLVLVGLLAALPFNLH-TQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRL---QEHEDPDEVADAHFQVATSLLDSGEHSKAVD-HLEVATALAPD--LTQAHELLAHTLRDMGSVEEAVRRYKIITAQRTTDIGTLV--QLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSF-RPPRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAP-TMQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTR-IYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAA--GEIVLEAVPQERWSTIF 1683
            + W NCECF SL+LVG+L ALPFNLH T++L+Q+ ETY+ +A E+   GA D A  LYERA+  +E A  H  LA+AL    R N+AL HY     L +  + KV +L+S+G +  + G    AV ++  V+ +    + +   E+ + + ++A +    G + +A+D +L  +  +  D  +++ +  + H    +G  + AV   K   A+       L   +L YAY E  D+ +      +  +  S   E  Y  AA H   F +  RAP+ Y++ LFD+ A +S F                          G K+  D   F  +HGL+FD + P T++++++  LG+               +GD     WLDI D G G+G        LANYI GVDLS  A+  A+R   +YD ++  D V  ++ +  NS D+V+A + + YFGDL  +  +   + R GG+  FN+D L+  +         + L+FTGRW+H   Y+ Q AA     +   +VV     +    A  G +V    PQ  +S +F
Sbjct:   69 MGWFNCECFLSLLLVGVLVALPFNLHNTKDLLQSRETYLFQAAEMIKVGACDDAVMLYERALVVQENAFIHNQLADALSKCGRTNDALDHYLSGIRLEETHRRKVPSLVSMGDLYQKIGEYALAVKSFDTVILILGDSKDQKQSELGEIYIKLAKAATGMGNYEQALDAYLSASKLVTSDALISEVNYRMGHCAAILGRTDTAVIALKKAAAKAPPSQKALYLYELAYAYFESGDYDRGNDGLSRVFAMQSMYPEDRYAKAAFHDHVFPQLHRAPSQYVSTLFDVHAHRSMFYAKY----------------------GAKSFAD---FQQLHGLLFDKIVPATIKSILQRKLGVS--------------DGDH----WLDIADFGSGEGSAIAPFRPLANYIFGVDLSSAAVDIARRVSGLYDELQVGDFVQATESLNENSFDVVLAMNSLQYFGDLRQVFESSYQILRVGGVFCFNIDTLESPDTS-------FTLKFTGRWAHTPRYIKQVAADLRFEIYQHQVVSDFQHVGQSNAEGGYLVPFDQPQTVYSDVF 576          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A1V9YQC0_9STRA (Methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQC0_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.850e-56
Identity = 159/559 (28.44%), Postives = 273/559 (48.84%), Query Frame = 1
Query:   19 NGGSDLEGGDL------VSWMNCECFFSLVLVGLLAALPFNLH-TQELMQTPETYVARAMELSGEGAFDKATSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYKVTALLSLGQVQTEEGRPHDAVDTYRQVLRLQ---EHEDPDEVADAHFQVATSLLDSGEHSKAVD-HLEVATALAPD--LTQAHELLAHTLRDMGSVEEAVRRYK--IITAQRTTDIGTLVQLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAALHSKSFRP-PRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFPASLAEGKKAGVDRGMFYDVHGLIFDDVAPT-MQNMIEEALGLPTNLVDGSSTGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIV 1644
            +G  D + GD+      + W+NCECF SL+LVG+L ALPFNLH T++L+Q+ ETY+ +A E+   GA D A  LYERA+  +E A  H  LA+AL    R N+AL HY     L +  + K+ +L+S+G +  + G    AV ++  V+ +    +     E+ + + ++A +    G++ +A+  +   +T ++ D  + + H  + H    +G ++ AV   K   + A  +     L +L YAY +  D+ +      +  +  S   E  Y+ AA + ++F P  RAP+ Y++ +FDL A++S     +    S  +                           +HGL F + AP  +  ++++ LG+                GD     WLD++D G G G        L+NY+ G+DLS  ++  A+R+++YD +K  D++ V+  +   + D+V+A +  PYFGDL  +      + R GGL   N D  +   + S      + L FTGRW+H+  Y+ Q AA   + +    V++    +     G++V
Sbjct:   51 DGAYDHDVGDMYDLQEPIGWLNCECFLSLLLVGVLVALPFNLHSTKDLLQSRETYLFQAAEMVKVGACDDAVMLYERALVVQENAFIHNQLADALSKCGRTNDALDHYLSGIRLEETHRRKIPSLISMGDLYQKIGEYALAVKSFDTVVLIMGDAKDAKSHELGEIYMKLAKAATGLGDYEQALRAYTSASTLVSGDAIVAEVHYRMGHCAAILGRMDVAVAALKKAAVKAPPSQKSLYLYELAYAYFQSGDYDRGNDGLDRLFAMQSMYPEDRYMKAAFYDRAFPPLHRAPSQYISTVFDLLAQRSLHLAPDTADLSAVLR-------------------------QLHGLFFVEAAPARISALLQDKLGVAP--------------GDH----WLDVVDFGAGTGAAMTPFRALSNYVLGIDLSAASVDIARRSQLYDELKVGDLIQVAAALTGGTFDVVLAMNTAPYFGDLRQVFEQGHRLLRVGGLFCLNTDQHNEMAESS------FALGFTGRWAHKTKYITQLAAEYQMEVFHHEVLEDARHVGQSPTGQLV 560          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A109CTG1_9BURK (Methyltransf_11 domain-containing protein n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A109CTG1_9BURK)

HSP 1 Score: 109 bits (273), Expect = 9.080e-22
Identity = 59/163 (36.20%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 1156 LDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIV 1644
            LD+LD GCG G  G  +   A ++ G+DLS+  +  A++  +YD++ + ++    +   P S DL+VA+D++ YFG L  L  A + V RPGG + F V+  DGEE G+G     + L   GR+SHR  Y+ +   AAG+++ G+  V+ R     P  G +V
Sbjct:  288 LDVLDAGCGTGLCGPLIAPYARHLAGIDLSQPMLDKARQREVYDTLTKAELTAFLEAAEPASCDLIVAADVLIYFGALGSLTRAAAKVLRPGGWLVFTVEAQDGEE-GAG-----FRLHPHGRYSHRESYLREVLGAAGIAVEGLERVELRVESGEPVDGWVV 444          
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Match: A0A433JD19_9PROT (Tetratricopeptide repeat protein n=2 Tax=Azospirillum doebereinerae TaxID=92933 RepID=A0A433JD19_9PROT)

HSP 1 Score: 108 bits (270), Expect = 1.580e-21
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 1
Query: 1123 AREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIKHAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAVSTVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTAAAAGLSLLGMRVVKGRTRLVSPAAGEIVLEAVP 1659
            A +G+S+    LD+LD GCG G     L  LA  +TGVDLS   ++ A+  ++YD++++ ++V    G  P++ DL+VA+D++ YFG L + L A +   RPGG +AF V+ L+   D       P+ +   GR++HR GYV  T A AGL +        R    +P AG +VL   P
Sbjct:  250 AADGESSE-GGLDVLDAGCGTGLCAAALRPLARRLTGVDLSGGMLERARARQLYDALEEAELVAFLSGR-PSAFDLIVAADVLCYFGVLEEALAAAARALRPGGRLAFTVEALEAAGDA------PHRVATHGRYAHRAGYVRATLATAGLEVAVFDRDTLRMESGAPVAGLVVLARRP 420          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16922.3877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN47_ECTSI5.870e-27071.30Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
F0XXG5_AURAN3.590e-8235.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
T0PZH9_SAPDV7.080e-6632.25Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A024U3B7_9STRA5.530e-6432.26Methyltransf_25 domain-containing protein n=3 Tax=... [more]
A0A7R9YDF8_9STRA9.290e-6435.78Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6G0WWW8_9STRA7.900e-6229.91Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1V9ZV36_9STRA1.660e-5931.00Methyltransferase n=1 Tax=Thraustotheca clavata Ta... [more]
A0A1V9YQC0_9STRA2.850e-5628.44Methyltransferase n=1 Tax=Achlya hypogyna TaxID=12... [more]
A0A109CTG1_9BURK9.080e-2236.20Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A433JD19_9PROT1.580e-2136.87Tetratricopeptide repeat protein n=2 Tax=Azospiril... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16922contigH-paniculata_contig16922:160..4676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score743.4
Seed ortholog evalue7.5e-212
Seed eggNOG ortholog2880.D7FN47
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2REQY@2759,COG4976@1
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-06_008370.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size2072
Cds size1647
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.6384912-UTR-H-paniculata_contig16922:159..5241622929339.6384912-UTR-H-paniculata_contig16922:159..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16922 160..524 -
1691480821.5309236-UTR-H-paniculata_contig16922:159..5241691480821.5309236-UTR-H-paniculata_contig16922:159..524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16922 160..524 -
1622929339.7997098-UTR-H-paniculata_contig16922:4616..46761622929339.7997098-UTR-H-paniculata_contig16922:4616..4676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16922 4617..4676 -
1691480821.63982-UTR-H-paniculata_contig16922:4616..46761691480821.63982-UTR-H-paniculata_contig16922:4616..4676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16922 4617..4676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.6535583-CDS-H-paniculata_contig16922:524..7081622929339.6535583-CDS-H-paniculata_contig16922:524..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 525..708 -
1691480821.5431366-CDS-H-paniculata_contig16922:524..7081691480821.5431366-CDS-H-paniculata_contig16922:524..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 525..708 -
1622929339.6718636-CDS-H-paniculata_contig16922:1014..12141622929339.6718636-CDS-H-paniculata_contig16922:1014..1214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 1015..1214 -
1691480821.5525568-CDS-H-paniculata_contig16922:1014..12141691480821.5525568-CDS-H-paniculata_contig16922:1014..1214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 1015..1214 -
1622929339.6851773-CDS-H-paniculata_contig16922:1617..21811622929339.6851773-CDS-H-paniculata_contig16922:1617..2181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 1618..2181 -
1691480821.5618849-CDS-H-paniculata_contig16922:1617..21811691480821.5618849-CDS-H-paniculata_contig16922:1617..2181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 1618..2181 -
1622929339.7006955-CDS-H-paniculata_contig16922:2466..25481622929339.7006955-CDS-H-paniculata_contig16922:2466..2548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 2467..2548 -
1691480821.5725138-CDS-H-paniculata_contig16922:2466..25481691480821.5725138-CDS-H-paniculata_contig16922:2466..2548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 2467..2548 -
1622929339.7186286-CDS-H-paniculata_contig16922:2926..30411622929339.7186286-CDS-H-paniculata_contig16922:2926..3041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 2927..3041 -
1691480821.583435-CDS-H-paniculata_contig16922:2926..30411691480821.583435-CDS-H-paniculata_contig16922:2926..3041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 2927..3041 -
1622929339.7328212-CDS-H-paniculata_contig16922:3356..34231622929339.7328212-CDS-H-paniculata_contig16922:3356..3423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 3357..3423 -
1691480821.5928204-CDS-H-paniculata_contig16922:3356..34231691480821.5928204-CDS-H-paniculata_contig16922:3356..3423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 3357..3423 -
1622929339.750764-CDS-H-paniculata_contig16922:3628..37631622929339.750764-CDS-H-paniculata_contig16922:3628..3763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 3629..3763 -
1691480821.6079018-CDS-H-paniculata_contig16922:3628..37631691480821.6079018-CDS-H-paniculata_contig16922:3628..3763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 3629..3763 -
1622929339.7696073-CDS-H-paniculata_contig16922:4068..42211622929339.7696073-CDS-H-paniculata_contig16922:4068..4221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 4069..4221 -
1691480821.6183326-CDS-H-paniculata_contig16922:4068..42211691480821.6183326-CDS-H-paniculata_contig16922:4068..4221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 4069..4221 -
1622929339.7813203-CDS-H-paniculata_contig16922:4469..46161622929339.7813203-CDS-H-paniculata_contig16922:4469..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 4470..4616 -
1691480821.6288674-CDS-H-paniculata_contig16922:4469..46161691480821.6288674-CDS-H-paniculata_contig16922:4469..4616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16922 4470..4616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16922.3877.1prot_H-paniculata_contig16922.3877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16922 525..4616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16922.3877.1

>prot_H-paniculata_contig16922.3877.1 ID=prot_H-paniculata_contig16922.3877.1|Name=mRNA_H-paniculata_contig16922.3877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=549bp
MNCECFFSLVLVGLLAALPFNLHTQELMQTPETYVARAMELSGEGAFDKA
TSLYERAVNTEETAERHVLLAEALVLAERRNEALWHYERAANLYDDRQYK
VTALLSLGQVQTEEGRPHDAVDTYRQVLRLQEHEDPDEVADAHFQVATSL
LDSGEHSKAVDHLEVATALAPDLTQAHELLAHTLRDMGSVEEAVRRYKII
TAQRTTDIGTLVQLGYAYHELCDFSQALAIYKKARSSPSKAAEMDYLTAA
LHSKSFRPPRAPAAYLADLFDLEARKSAFSQSEMQRTSRTILGGSADNFP
ASLAEGKKAGVDRGMFYDVHGLIFDDVAPTMQNMIEEALGLPTNLVDGSS
TGASAREGDSNSLKWLDILDLGCGQGRLGRQLERLANYITGVDLSEEAIK
HAKRTRIYDSVKQDDVVTVSKGMLPNSVDLVVASDLVPYFGDLSDLLHAV
STVSRPGGLVAFNVDVLDGEEDGSGGNSWPYELRFTGRWSHRRGYVMQTA
AAAGLSLLGMRVVKGRTRLVSPAAGEIVLEAVPQERWSTIFLFVNMGP*
back to top

mRNA from alignment at H-paniculata_contig16922:160..4676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16922.3877.1 ID=mRNA_H-paniculata_contig16922.3877.1|Name=mRNA_H-paniculata_contig16922.3877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4517bp|location=Sequence derived from alignment at H-paniculata_contig16922:160..4676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTGCTGCGAACCCCAACGGAGGCTCCGACTTGGAGGGGGGGGATCT GGTCAGTTGGATGAACTGCGAGTGCTTTTTCTCATTGGTGTTGGTGGGTC TGTTGGCGGCGCTACCCTTCAATCTGCACACTCAAGAGCTTATGCAGACG CCGGAGACGTATGTTGCTCGGGCGATGGAACTTTCAGGAGAAGGGGCGTT CGACAAGGTTTGCGCATTTGACCGCGGATGAAATTATTTCAACCCCGGTG CTCGGCATGTAAAAATTGTAAATATGGAGGAATACCGTGTGAATGTCGTA GGGCTAGTGTTTTCATGGTGCTTCTACATTATGGTGAGAATAACAGAGGT ATTTTGCAAATATGAAAAGCGCGTATATTTGACTGAATTACTGCTGACTC CGGCCTCCAGGAGAGAGGACACCACAGTGTCTTTGTGAATGTGCTATCCT TTCAGGCGACTTCGCTTTACGAGCGCGCTGTAAATACGGAGGAAACAGCA GAGAGGCATGTTCTGCTGGCTGAAGCGCTGGTTCTGGCCGAGAGGAGAAA TGAGGCCCTCTGGCACTATGAGCGGGCCGCGAACCTGTACGATGATCGCC AGTACAAGGTAGGGCGACCTTTCCCAAGTGTCGTTCATGTGAGACACTCG AAATATGGAAAGGGGAACAAAGGAAGCCGTTGGAATGTTTGTTATGCCAT TAGCAACCAATAATAAACGATGAAACACTTCGCAATGGCTTCGACTGCCC GGCTAAGATGGTATGCGTGTGGAAATTATTGTTATGAGACCAATCAATCG ACCATTGATGTCGCATGCATGAATCCAGAATAGTTTCTGCGATGCTGGAA TATCGAGGTTGTCTAGGTCATATACGTTGTTGTGCCTTTTACCTCAATTG CGCCTATGAATAGGTGACAGCCTTATTGAGTCTAGGTCAGGTGCAGACGG AGGAGGGTCGCCCTCATGATGCTGTGGACACCTATCGGCAGGTCTTGCGG TTGCAGGAACACGAGGATCCCGATGAGGTGGCAGACGCTCATTTCCAGGT GCGTCCAAGTATGGTGAGGAATTGATGTTCCAAGGTTTTACATACTTATA GTGACATACACGTGCACTCTACATATGTTTATATGCTTATACAATATCGA TAGATGAAGATTGTCGTGAAGGTTTGTGAGAGTTACTCTGGCGCAGTCTT TCACCAACGCTATGTATCATGTATAAATCATTTTGCACTTTGGAAAACTG CAGGTGGCGACGAGCTTGCTGGATAGCGGCGAGCACTCCAAGGCCGTGGA TCACCTTGAAGTGGCTACGGGTGAGAGTTGTTGGTTGTTGGCGTCGTTGC GTGGCAGCTTCCCATACTCACGTATTTTTCGACACTACGCTGAAACCACA TGTTATCTACACTCACTCGGGTCGATAAGAGCATGCCAAGACAACCTCGA GTAGTTTACACCAATGGCGACAAGAGGGACCCACTTGCTCCGTTTGCTTG TTCTCCAGAGAGGTGTGAGGAATAGTCACTCACGATTTTGTGAGATACTA AAATGCATATGTTTTTCCTCGCACTAATTCGTGGTGAGGATTGTTCAAGT ACTCCATGTTATAATGTCGTGGACTTTCTGTGCAGCATTGGCTCCCGATT TAACTCAAGCGCATGAGCTATTGGCTCACACGCTGCGAGACATGGGTTCA GTGGAGGAGGCAGTTAGGCGGTACAAAATCATCACGGCGCAGCGGACCAC GTGAGAGCCAGCAACTTAAAAGTATCTAGAGGGCGAACTATCATCTGTTC GTGTATTTTCTAGCAACAGGAATCTAGATGAAGGTTGCCCAAGACTTCTA GTTCAGGAGACTACGAGTGGATCAATCGCGAACGGTAGATGTTAGTACCA AGATCGATGTCGTGATGTGGCGCTCGACTTTCGTTGAGGAGGCATTATAT TCACGTTGGGGGGCATGGTGCGGCAGTGGCAGAACTGTTTCAGGAGCACG ATATTCGTGTAGACAATCGGAGCGTAGATGGAACATTCGCTTGTAAAGTC TGTCAGGTTATGCTGTATATCTGCAACTTCGATAACCACCAAAAGCATCT GCGTCTCGTGTGCTTTACCCGTTCTCAGTGACATTGGAACGCTAGTGCAG CTGGGCTATGCGTACCACGAGCTGTGTGACTTTTCTCAAGCCCTGGCAAT CTACAAGAAGGTTCGTCAAAATGGGAGGTCTGGATTTGTATCCATTTACT ATGTTGTGTTGGTACGGCGAACTCTAACTCCTTGTTTTGAATTCGACTCG TGATATCCTACATTCGCTACCTTGCTTCCATTTGGGTGTATGCATCCCCC GACTAGGTGCCCTGTGATACACTGTAAAATCGCCCCCTTGTTCATTCACC AACTTCTACCGCAAACCGGCAACGGATCCCATTGATCGATCAAAAATCAT GACTTATCTCGGTCATTAATTTCATCGCGCCTCGACGCACTCCAGGCTCG ATCCTCCCCAAGTAAAGCAGCGGAGATGGACTACCTCACTGCGGCCTTAC ACAGCAAGTCTTTCCGTCCGCCTCGAGCTCCGGCAGCATACCTGGCCGAT CTCTTCGATCTGGAGGCTAGAAAGAGCGCTTTCTCGCAATCGGAGATGCA GAGGACGTCTCGTACGATCTTAGGCGGTAGTGCCGATAATTTCCCGGCAT CTTTGGCCGAGGGCAAGAAAGCTGGGGTTGACCGTGGTATGTTTTACGAT GTGCACGGCCTTATTTTTGACGATGTTGCACCAACTATGCAAAATATGAT AGAGGAAGCTCTTGGGTTGCCTACAAACTTGGTTGACGGTAGCTCCACCG GCGCCAGTGCACGTGAGGGGGACTCCAACAGTCTAAAATGGTTGGATATT CTGGATCTGGGGTGCGGGCAAGGTCGCTTGGGGCGCCAGCTTGAACGTTT GGCAAACTACATAACAGGGGTGGATCTGTCTGAAGAGGCCATTAAACACG CTAAGCGGACAAGAATTTATGACAGCGTTAAACAAGACGACGTCGTCACA GTCTCAAAGGTTAGTCGTACTGTTGCGTCTCTGGCCCATCCGCACACCGA CGAACACATCTCGATACTGCCTGGTTTGCCATAAGAGTTGTAAACTTGCT GAGGGCGTTTAGCGTTGTGTGGACTCGACTCGCAGTTTAGTTTATGCTAC CTCTGTTGCTGCAGGCACCAATAAAACACTCTCATGCTGAAGCTCTTTGC TACTTCGAGAAGAAAAACACACACACGTAGACCATCCTCTCTTGGTTGCT TCACATTGTTTTGTTCACTAAAGATACGTTTGAGTTCGTCCAGATCAACC AAAAGCACCAGTAACTGTTCCGAAATGACTACAAATACCTACCATCACCA CGGCAGGTGTATCACAATTGGTTTCCGTACTCACTCAATTTTGTGTTGAA TTTTGATTTCAGGGTATGCTCCCAAATAGTGTGGACCTCGTTGTGGCGTC GGACCTCGTGCCGTACTTCGGGGACCTGAGCGACCTCTTGCACGCCGTTT CGACTGTGTCCCGGCCTGGTGGGCTCGTTGCGTTCAACGTCGACGTGCTA GATGGAGAAGAGGATGGATCGGGCGGGAATTCCTGGCCATATGAGCTGCG ATTCACTGGCAGGTGAGAGTGACATTGCCACAACAAGCACATGGACCGAG TGACACGCAGCACTAGCGATTTTTTGGGTCTCATTTCGTAAGAATGAGCT GCTGGCCTTGAGTTAGTTCATCATTATTTGTCCTTAATCTGTGTATTCTG CGCCATTTGATGTTTGGAACAACACAACTCGACTTGGACGATCACCCATC ATCTCCATTCATGAAGTATATCGCAATGTTGGAAGGATTTCCATTGGTTT TGCCACAAGGGTGCGCCTGTTAACATCCGATTGACGCAATACAGTACTGT CGCAATGTGTCCTCTCAGGTGGAGTCACCGACGAGGATATGTGATGCAGA CTGCTGCTGCTGCAGGATTGTCGCTTTTGGGAATGCGCGTGGTCAAAGGA AGGACGCGTCTCGTCAGTCCCGCCGCTGGAGAGATCGTACTTGAAGCAGT GCCGCAGGAGCGGTGGTCCACAATATTTCTTTTTGTAAACATGGGGCCTT GACGTCGTCCTAGCCTCCCGAATGTGATTTTTTGTGTTTCCGTTGTTTGT TGGCCAGGACGATGCACTGACGATTAGTTCCACACCGCTGGGTGTAAGTC ACGTGTGATAGTTGGCATGTTTGTCATTTCTATATCGACTTGTGTAGAGG GGGTCGGTTCGAGGAAGATCGTTGCGATATTTTCCATCTTGCTGTATGTG TAAACGCCATTTTCTATGTTCTTCTGCTTTTCGTAATGTCGACGAATGTA TCTGTTCACCAGATGGGGAAGCGGATGAGTTTAGAATATTTCTCTTCCTA ATGTTTTCAAGGTTTCAACATGTGCATTTTTTTTTTCCTTGAAAGGACGG GAGGAAACCTTTGCCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16922:160..4676-

>mRNA_H-paniculata_contig16922.3877.1 ID=mRNA_H-paniculata_contig16922.3877.1|Name=mRNA_H-paniculata_contig16922.3877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3294bp|location=Sequence derived from alignment at H-paniculata_contig16922:160..4676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTGCGAGTGCTTTTTCTCATTGGTGTTGGTGGGTCTGTTGGCGGC
GCTACCCTTCAATCTGCACACTCAAGAGCTTATGCAGACGCCGGAGACGT
ATGTTGCTCGGGCGATGGAACTTTCAGGAGAAGGGGCGTTCGACAAGATG
AACTGCGAGTGCTTTTTCTCATTGGTGTTGGTGGGTCTGTTGGCGGCGCT
ACCCTTCAATCTGCACACTCAAGAGCTTATGCAGACGCCGGAGACGTATG
TTGCTCGGGCGATGGAACTTTCAGGAGAAGGGGCGTTCGACAAGGCGACT
TCGCTTTACGAGCGCGCTGTAAATACGGAGGAAACAGCAGAGAGGCATGT
TCTGCTGGCTGAAGCGCTGGTTCTGGCCGAGAGGAGAAATGAGGCCCTCT
GGCACTATGAGCGGGCCGCGAACCTGTACGATGATCGCCAGTACAAGGCG
ACTTCGCTTTACGAGCGCGCTGTAAATACGGAGGAAACAGCAGAGAGGCA
TGTTCTGCTGGCTGAAGCGCTGGTTCTGGCCGAGAGGAGAAATGAGGCCC
TCTGGCACTATGAGCGGGCCGCGAACCTGTACGATGATCGCCAGTACAAG
GTGACAGCCTTATTGAGTCTAGGTCAGGTGCAGACGGAGGAGGGTCGCCC
TCATGATGCTGTGGACACCTATCGGCAGGTCTTGCGGTTGCAGGAACACG
AGGATCCCGATGAGGTGGCAGACGCTCATTTCCAGGTGACAGCCTTATTG
AGTCTAGGTCAGGTGCAGACGGAGGAGGGTCGCCCTCATGATGCTGTGGA
CACCTATCGGCAGGTCTTGCGGTTGCAGGAACACGAGGATCCCGATGAGG
TGGCAGACGCTCATTTCCAGGTGGCGACGAGCTTGCTGGATAGCGGCGAG
CACTCCAAGGCCGTGGATCACCTTGAAGTGGCTACGGGTGGCGACGAGCT
TGCTGGATAGCGGCGAGCACTCCAAGGCCGTGGATCACCTTGAAGTGGCT
ACGGCATTGGCTCCCGATTTAACTCAAGCGCATGAGCTATTGGCTCACAC
GCTGCGAGACATGGGTTCAGTGGAGGAGGCAGTTAGGCGGTACAAAATCA
TCACGGCGCAGCGGACCACCATTGGCTCCCGATTTAACTCAAGCGCATGA
GCTATTGGCTCACACGCTGCGAGACATGGGTTCAGTGGAGGAGGCAGTTA
GGCGGTACAAAATCATCACGGCGCAGCGGACCACTGACATTGGAACGCTA
GTGCAGCTGGGCTATGCGTACCACGAGCTGTGTGACTTTTCTCAAGCCCT
GGCAATCTACAAGAAGTGACATTGGAACGCTAGTGCAGCTGGGCTATGCG
TACCACGAGCTGTGTGACTTTTCTCAAGCCCTGGCAATCTACAAGAAGGC
TCGATCCTCCCCAAGTAAAGCAGCGGAGATGGACTACCTCACTGCGGCCT
TACACAGCAAGTCTTTCCGTCCGCCTCGAGCTCCGGCAGCATACCTGGCC
GATCTCTTCGATCTGGAGGCTAGAAAGAGCGCTTTCTCGCAATCGGAGAT
GCAGAGGACGTCTCGTACGATCTTAGGCGGTAGTGCCGATAATTTCCCGG
CATCTTTGGCCGAGGGCAAGAAAGCTGGGGTTGACCGTGGTATGTTTTAC
GATGTGCACGGCCTTATTTTTGACGATGTTGCACCAACTATGCAAAATAT
GATAGAGGAAGCTCTTGGGTTGCCTACAAACTTGGTTGACGGTAGCTCCA
CCGGCGCCAGTGCACGTGAGGGGGACTCCAACAGTCTAAAATGGTTGGAT
ATTCTGGATCTGGGGTGCGGGCAAGGTCGCTTGGGGCGCCAGCTTGAACG
TTTGGCAAACTACATAACAGGGGTGGATCTGTCTGAAGAGGCCATTAAAC
ACGCTAAGCGGACAAGAATTTATGACAGCGTTAAACAAGACGACGTCGTC
ACAGTCTCAAAGGCTCGATCCTCCCCAAGTAAAGCAGCGGAGATGGACTA
CCTCACTGCGGCCTTACACAGCAAGTCTTTCCGTCCGCCTCGAGCTCCGG
CAGCATACCTGGCCGATCTCTTCGATCTGGAGGCTAGAAAGAGCGCTTTC
TCGCAATCGGAGATGCAGAGGACGTCTCGTACGATCTTAGGCGGTAGTGC
CGATAATTTCCCGGCATCTTTGGCCGAGGGCAAGAAAGCTGGGGTTGACC
GTGGTATGTTTTACGATGTGCACGGCCTTATTTTTGACGATGTTGCACCA
ACTATGCAAAATATGATAGAGGAAGCTCTTGGGTTGCCTACAAACTTGGT
TGACGGTAGCTCCACCGGCGCCAGTGCACGTGAGGGGGACTCCAACAGTC
TAAAATGGTTGGATATTCTGGATCTGGGGTGCGGGCAAGGTCGCTTGGGG
CGCCAGCTTGAACGTTTGGCAAACTACATAACAGGGGTGGATCTGTCTGA
AGAGGCCATTAAACACGCTAAGCGGACAAGAATTTATGACAGCGTTAAAC
AAGACGACGTCGTCACAGTCTCAAAGGGTATGCTCCCAAATAGTGTGGAC
CTCGTTGTGGCGTCGGACCTCGTGCCGTACTTCGGGGACCTGAGCGACCT
CTTGCACGCCGTTTCGACTGTGTCCCGGCCTGGTGGGCTCGTTGCGTTCA
ACGTCGACGTGCTAGATGGAGAAGAGGATGGATCGGGCGGGAATTCCTGG
CCATATGAGCTGCGATTCACTGGCAGGGTATGCTCCCAAATAGTGTGGAC
CTCGTTGTGGCGTCGGACCTCGTGCCGTACTTCGGGGACCTGAGCGACCT
CTTGCACGCCGTTTCGACTGTGTCCCGGCCTGGTGGGCTCGTTGCGTTCA
ACGTCGACGTGCTAGATGGAGAAGAGGATGGATCGGGCGGGAATTCCTGG
CCATATGAGCTGCGATTCACTGGCAGGTGGAGTCACCGACGAGGATATGT
GATGCAGACTGCTGCTGCTGCAGGATTGTCGCTTTTGGGAATGCGCGTGG
TCAAAGGAAGGACGCGTCTCGTCAGTCCCGCCGCTGGAGAGATCGTACTT
GAAGCAGTGCCGCAGGAGCGGTGGTCCACAATATTTCTTTTTGTAAACAT
GGGGCCTTGAGTGGAGTCACCGACGAGGATATGTGATGCAGACTGCTGCT
GCTGCAGGATTGTCGCTTTTGGGAATGCGCGTGGTCAAAGGAAGGACGCG
TCTCGTCAGTCCCGCCGCTGGAGAGATCGTACTTGAAGCAGTGCCGCAGG
AGCGGTGGTCCACAATATTTCTTTTTGTAAACATGGGGCCTTGA
back to top