mRNA_H-paniculata_contig16914.3875.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE) HSP 1 Score: 147 bits (372), Expect = 9.430e-38 Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 235 HVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKGVSKSKGNNHALKAVVNIRARGRHDERGVRTGAPRKTMKESEAAAASGR 618
HVV+ P D + ++GRTARMGAKG VTSLLAKRDLVLAAAIEQAVQ+G+PLDELSSRRTDYA+G KLGP+FGRKG KG++H+LKAV+N RAR + +ERG R GAPRK K E AA GR
Sbjct: 467 HVVMFD-FPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKGKVSVKGSHHSLKAVMNTRARSQVNERGERIGAPRKGEKR-ELAATGGR 592
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.420e-28 Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1
Query: 235 HVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKGVSKSKGNNHALK 510
HVV+ P D + ++GRTARMGAKG VTSLLAKRDLVLAAAIEQAVQ+G+PLDELSSRRTDYA+G KLGP+FGRKG KG++H+LK
Sbjct: 350 HVVMFD-FPLNPIDYLHRSGRTARMGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGKLGPLFGRKGKVSVKGSHHSLK 440
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A7S3XYE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE8_HETAK) HSP 1 Score: 93.6 bits (231), Expect = 7.460e-19 Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 235 HVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKGVSKSKGNNHALKAVV-NIRARGRHDERGVRTG 567
HVV+ P D + ++GRTARMGA GMVTS+LAKRD VLA AIE AV+ G+PLD L++ + DY G KL V GR+G + +GNNH+ K + R RH + G G
Sbjct: 256 HVVMFD-FPLNPVDYLHRSGRTARMGASGMVTSVLAKRDRVLAGAIEAAVRKGLPLDTLTASKRDYQEGKKLAEVVGRRGKASGQGNNHSFKQPRGSSRGGSRHQDGGKSMG 366
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 7.200e-16 Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 235 HVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKL-GPVFGRKGVS-KSKGNNHALKAVVNIRARGRHDERGVRTGAPRK 579
HVV+ P + + ++GRTARMGAKG VTSLL KRD VLA+A++ AV G+PLD LS+R+ DY SG KL G G+ G S SKGN HA K V N R R G G+P K
Sbjct: 456 HVVMFD-FPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDYESGGKLSGLSSGKMGASPSSKGNRHA-KYVAN-RQRSASGRAGSIEGSPEK 569
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.030e-14 Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 223 PASCHVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKG 474
P HV++ P D + ++GRTARMGA+G VTSLLAKRD VLAAAIE AV AG PLD L++RRTDY G KL G +G
Sbjct: 350 PEVGHVIMFD-FPLNPVDYLHRSGRTARMGARGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYLPGGKLAAKSGSRG 432
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A6U1QKZ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QKZ5_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.710e-12 Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 223 PASCHVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPV--FGRKGVSKS----KGNNHA 504
P HVV+ P D + ++GRTARMG G+VTS+L K D VLA AIE+A+ MPLD+LSSR+ DY KL + GR+ +K+ +GNNH+
Sbjct: 105 PTVDHVVMFD-FPLNPIDFLHRSGRTARMGRHGLVTSILTKGDRVLATAIERAILTNMPLDQLSSRKQDYGDRGKLHHMTKVGRRKAAKAPKNKRGNNHS 203
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A1Z5K3P6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3P6_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 4.080e-11 Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 223 PASCHVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYA 435
P HVVL P D + +TGRTAR G KG VT+L+AKRD VLA AIE+AV +G P+D LSSR++DYA
Sbjct: 447 PTVDHVVLFD-FPLNALDYLHRTGRTARQGQKGKVTALVAKRDKVLANAIERAVTSGQPIDGLSSRKSDYA 516
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A448Z3G8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3G8_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.470e-10 Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 1
Query: 139 WDKMRLVCC--VGSWGLCSPQ*LRSA**SNPASCHVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKGVSKS 486
+D +++ C +G+ GL PQ V+ P D + ++GRTAR KG VT+L+AKRD VLA AI+QAV G LD LSSR++DY GA+ G +K ++S
Sbjct: 412 FDNNKILVCTDIGARGLDIPQ------------VDSVVMFDFPLNAMDYLHRSGRTARGAGKGKVTALVAKRDKVLATAIQQAVLRGETLDGLSSRKSDYRPGARFGVKPKKKKAARS 517
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A7S1I2D0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I2D0_9EUGL) HSP 1 Score: 66.6 bits (161), Expect = 2.900e-9 Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 235 HVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVFGRKGVSKSK 489
HV+L P D + + GRTARMG KG+VTSL+ +++ LA AI+ ++Q G+PL+ L+S DY G +L + G+K + K
Sbjct: 450 HVILFD-FPLNPVDYLHRAGRTARMGKKGIVTSLINRKEYTLARAIDMSIQQGLPLEGLTSNPNDYKEGGRLAHIVGKKSKASFK 533
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Match: A0A7S3H0G3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0G3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 6.810e-9 Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 223 PASCHVVLSHAMPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDELSSRRTDYASGAKLGPVF 462
P + HVV+ P D + + GR R G KG+VT+L+AKRD VLA AIE+A+ G+P+D LSS + DY +L F
Sbjct: 63 PETAHVVMFD-FPLNPVDYLHRAGRCGRAGRKGLVTALVAKRDQVLAEAIEKAISKGLPIDALSSDKKDYTGTGRLVRAF 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16914.3875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16914.3875.1 >prot_H-paniculata_contig16914.3875.1 ID=prot_H-paniculata_contig16914.3875.1|Name=mRNA_H-paniculata_contig16914.3875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp MPFMFFDCVVQTGRTARMGAKGMVTSLLAKRDLVLAAAIEQAVQAGMPLDback to top mRNA from alignment at H-paniculata_contig16914:208..2633- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16914.3875.1 ID=mRNA_H-paniculata_contig16914.3875.1|Name=mRNA_H-paniculata_contig16914.3875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2426bp|location=Sequence derived from alignment at H-paniculata_contig16914:208..2633- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16914:208..2633- >mRNA_H-paniculata_contig16914.3875.1 ID=mRNA_H-paniculata_contig16914.3875.1|Name=mRNA_H-paniculata_contig16914.3875.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig16914:208..2633- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |