mRNA_H-paniculata_contig169.3864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: H3GJA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA9_PHYRM) HSP 1 Score: 80.1 bits (196), Expect = 2.040e-14 Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 1
Query: 1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGG-------------------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
S A+P Y R + + I++ YVDDL+I S+ K + LK + +++LGE+ +G I RNR+ + + GAL +L T TR DIA +V V KF E H A ++IL+Y+ + G+ + G + E++ +AD+N A
Sbjct: 960 SAADPCVYVRRSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKPLKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRANSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVFNGGTK--GELIGYADANWA 1130
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A6A3BRJ6_HIBSY (Nudix hydrolase 14 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BRJ6_HIBSY) HSP 1 Score: 68.9 bits (167), Expect = 1.540e-10 Identity = 47/169 (27.81%), Postives = 91/169 (53.85%), Query Frame = 1
Query: 22 YCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE-------------MRELKWGGGALTWLTTMTRHDI---ANSVRTVEKFSEKL-GVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHATCPGAMWSVSG 477
+ R V +L I++ YVDDLLI ++ L S+++++DLGE+ ++G + R+++ ++++K GGA LT + +++I + +++++ E + G H +A +I++YV + P +GI +VA+ DS+ ATCP + SV+G
Sbjct: 566 FTRRVASKLVIVLVYVDDLLITGSDNVMIKELKCTLNSKFKMKDLGELKYFLGLEVLRSKKRIVLNQRKYALELIKDIK-AGGARPALTPLEQNNIFLAGSDTKSLKQNEEDMPGKMHMQASLRIVRYVKKNPGQGILLDSSSACG--LVAYCDSDWATCPMSRKSVTG 731
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A438E8J0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E8J0_VITVI) HSP 1 Score: 66.6 bits (161), Expect = 8.450e-10 Identity = 43/159 (27.04%), Postives = 80/159 (50.31%), Query Frame = 1
Query: 22 YCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE----------------MRELKWGG--GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
Y +I ++ I+V YVDD+L+AS ++ L + ++DLGE S +G I R+R+ M ++ + G++ + TR DIA V + ++ G+ H KAV+K+L+Y+ + +TY + E++ ++DS++A
Sbjct: 241 YLKISGSKICIIVLYVDDMLLASNNMGMILETKQFLSKNFDMKDLGEASYVIGIEIHRDRDIFCELQCPKNDLEKKQMDKIPYASAVGSIMYAQVCTRPDIAYVVGMLGRYQSNPGIDHWKAVKKVLRYLQGTKDYMLTY--RRTDNLEIIGYSDSDYA 397
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A6L2JRP5_TANCI (Putative polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JRP5_TANCI) HSP 1 Score: 66.2 bits (160), Expect = 1.290e-9 Identity = 42/158 (26.58%), Postives = 80/158 (50.63%), Query Frame = 1
Query: 37 NGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE--------------------MRELKWGG--GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
+G L L+ YVDD+L+A+KG E +++ L + + ++DLG +G I ++R+ M + + G+L + TR DIA+++ V ++ G +H AV++I +Y+ + G+ YGG+ E +V ++ S++A
Sbjct: 638 SGSLIYLLLYVDDMLVAAKGMEEVNKLKILLNTEFDMKDLGAARKILGMEIIQDRKHANFRLSTTCAPQTEAKIEYMSRIPYASTVGSLMYAMVYTRPDIAHAMSVVSRYMAHPGKEHWNAVKRIFRYLKGTSDGGLIYGGE--REYLVVGYSYSDYA 793
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A2P4X8N7_9STRA (Mitochondrial protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8N7_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.310e-9 Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 7 AEPYAYCRIVNGELEILVA-YVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTW-LTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHATCPGAMWSVSG 477
A+P Y R G+ E +V YVDD+LIAS+ K+++ + ++R++DLG +G I + E + L A T + TR IA +V + ++ E +H A K+++Y+ + + ITY G+ E+ A++D++ A SVSG
Sbjct: 63 ADPCVYTR-GEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTESIINRTRPGIAFAVAKLSRYLENPDHRHWDAGIKVVRYLTKTKDAAITYNGRMG--TELTAYSDADWAGNRDNRRSVSG 218
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A250XAJ6_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAJ6_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 2.400e-9 Identity = 51/196 (26.02%), Postives = 89/196 (45.41%), Query Frame = 1
Query: 1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITR---------NREMREL-----------------------KWGG---------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
S A+P Y + VNG+LEI++ +VDDLLIA+ + +LK ++D+G S Y+G I+R ++ REL + G GAL +L T TR D+A +V + +F + H + +++Y+ GI +GG+ +H +V F+D+++++
Sbjct: 632 SEADPAVYFQFVNGQLEIILTHVDDLLIAASDLNRVHWVKEQLKGLVDIKDMGPASYYLGMEISRKDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLNEEKASQYRETVGALMYLQTSTRPDLAYAVGLLARFFQSPTELHMDLLTSVMRYLQTTQHFGIEFGGE-KHTG-LVGFSDNSYSS 825
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A1Y1ISS2_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISS2_KLENI) HSP 1 Score: 65.1 bits (157), Expect = 3.270e-9 Identity = 42/153 (27.45%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTWLTTMTRHDIA-----NSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
S A+ + +V+GE L+ +VDD+LIA++GK+ + + L + ++DLGE + ++G + R+RE R LK T + RH +A ++V + +++ H A +++Y+ E G+T+GG + + F D++ A
Sbjct: 703 SVADAALFLGVVDGEEVFLLVWVDDILIATRGKDRVAKVKAHLARTFDVRDLGEATYFLGMELARDREARTLKLTQKKQTG-KLLGRHWLAGARARSAVGALARYTSAPTEAHWAAALGVVRYLAGTAEAGVTFGGSGEL---LEVFCDADFA 851
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A250XPJ1_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPJ1_9CHLO) HSP 1 Score: 64.7 bits (156), Expect = 4.330e-9 Identity = 49/196 (25.00%), Postives = 88/196 (44.90%), Query Frame = 1
Query: 1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITR---------NREMREL-----------------------KWGG---------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
S A+P Y + +NG+LEI++ +VDDLLIA+ + ++K ++D+G S Y+G I+R ++ REL + G GAL +L T TR D+A +V + +F + H + +++Y+ G+ +GG+ Q +V F+DS++++
Sbjct: 464 SEADPAVYFQFMNGQLEIILTHVDDLLIAAADLNRVQWIKEQVKGLVDIKDMGPASYYLGMEISRKDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLTEEKASKYRETVGALMYLQTGTRPDLAYAVGLLARFFQSPTELHMDLLTSVMRYLQTTQHFGLEFGGEKQ--KGLVGFSDSSYSS 657
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: I2FUT6_USTH4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2FUT6_USTH4) HSP 1 Score: 63.9 bits (154), Expect = 5.780e-9 Identity = 42/162 (25.93%), Postives = 79/162 (48.77%), Query Frame = 1
Query: 13 PYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMREL-----------------KWGGGALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
P Y R + + I++ YV+D LI + E E+ R+++++ G+VS ++G I+RNRE R + K L WL+ T DI+ +VR + + + +H +K+LQY+ + + YG Q ++ ++A +++N A+
Sbjct: 39 PCIYTRGKDDDFAIVIIYVNDTLIITPKLETAKCIKEEIGRRWKMEEGGDVSHFLGIKISRNREARTMSLEQTSYVKQLLNEHLDKCWRNKLLWLSNGTCPDISQAVRVLAWYMTQPLKEHYNTAQKVLQYLDHTQDIHLQYGSDKQ-QDFLMAHSNTNWAS 199
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A699VFY7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VFY7_TANCI) HSP 1 Score: 60.1 bits (144), Expect = 1.860e-8 Identity = 39/139 (28.06%), Postives = 68/139 (48.92%), Query Frame = 1
Query: 28 RIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
R + + IL+ YVDD+LI K + +L + ++DLG +G +R + G+L ++ TR D+A++V V +F G +H KAV+ I +Y + GI +G + + +V + DS+ A
Sbjct: 6 RFSDDDFNILLLYVDDMLIVGKNIGRIAHLKRDLSKSFAIKDLGPAKQILGIQNFYDRAV-------GSLMYVMVCTRPDLAHAVGVVSRFLSNPGKKHWKAVKWIFRYQRGTSKLGIAFGNR---KPTLVGYTDSDLA 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig169.3864.1 >prot_H-paniculata_contig169.3864.1 ID=prot_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQback to top mRNA from alignment at H-paniculata_contig169:30431..31067+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig169.3864.1 ID=mRNA_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at H-paniculata_contig169:30431..31067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig169:30431..31067+ >mRNA_H-paniculata_contig169.3864.1 ID=mRNA_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig169:30431..31067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |