mRNA_H-paniculata_contig10585.382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10585.382.1
Unique NamemRNA_H-paniculata_contig10585.382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: D7FVK8_ECTSI (Asparagine synthetase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK8_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 2.090e-136
Identity = 222/310 (71.61%), Postives = 245/310 (79.03%), Query Frame = 3
Query:  390 MRNVMNALRARVSSVGVPLDVGGKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESR---------GEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSGG 1292
            M+N +  LRARV S+G      GKNI+AFSGGVDSSLVA LVH  FP++S AC+GVS+ALPAAQL LAR VAN IGIPLTE+ T EGSDP YIANEGQSCFHCK+HLYS+LEAVA QAG ESR         GE  TS                   +VVLFNG NKDDKRD TRVGLKAAADFQVASPID+LTKAEVRAV+REL LPNWNHAASPCLRSRLAFGVQATPE+L +VEKAE+ AR  LDLGVSHNLRVRAMHG KALLEVD GE LE+A+R++ DIR LILPLGFGEV+VR FRSGA+SGG
Sbjct:    1 MQNTIRTLRARVLSLGTSA-ADGKNIVAFSGGVDSSLVAALVHHAFPRSSQACVGVSSALPAAQLDLARSVANRIGIPLTEISTTEGSDPDYIANEGQSCFHCKTHLYSALEAVAVQAGVESRRSSAAAVGDGEPSTSALEGGGADGAGGIVEGGR-RVVLFNGTNKDDKRDTTRVGLKAAADFQVASPIDMLTKAEVRAVARELGLPNWNHAASPCLRSRLAFGVQATPEKLVLVEKAEDAARKRLDLGVSHNLRVRAMHGNKALLEVDAGEILEEALRSIEDIRSLILPLGFGEVDVRPFRSGAVSGG 308          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A836CNR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR6_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.010e-89
Identity = 168/302 (55.63%), Postives = 202/302 (66.89%), Query Frame = 3
Query:  390 MRNVMNALRARVSSVGVPLDVGGKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGA--ESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            MR+++  L+ R+ + G    + G N++AFSGGVDSS+VA LVH+VFP NSLAC+GVS +LPAAQ +LA  +A+ IGI L EVVT EGSDP YIAN GQSC+HCKSHLYS+LEA+A  A A   SR   D                     + VLFNG N++D+ D TRVGLKAAA++ V+SPID LTKA+VRAV+R L LPNW+HAASPCLRSRLAFGV ATP  LA VE+AE  AR LL LG   NLRVRAM  E+AL+EVD    L                      +VRAFRSGA+SG
Sbjct:    1 MRSLIRTLQRRIEAEGT---LRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDS------------------RNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAAR-LXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSG 280          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A6V1PUF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PUF6_HETAK)

HSP 1 Score: 280 bits (716), Expect = 2.130e-86
Identity = 162/297 (54.55%), Postives = 195/297 (65.66%), Query Frame = 3
Query:  399 VMNALRARVSSVGVPLDVGGKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            +++ L ARVS++G      G NIIAFSGGVDSSL A LVH+VFPQNS ACIG+SAALP  QL LAR+VA+ IGI L EV T EG D  YIAN+G++C+HCK+HLYSSL AVAE A A+                           KV+LFNG NKDD RD TR+GLKAA +F+VASP+  +TK EVR  ++ L LPNW HAASPCLRSRLAFGV AT E L  ++KAE + R  L LG   NLRVRA +  +A + VD    LE      P I   IL LGF  V+ RA+R+G +SG
Sbjct:    7 IIDLLLARVSNLGTRR---GSNIIAFSGGVDSSLSAALVHKVFPQNSSACIGISAALPQDQLILAREVASSIGIHLQEVRTNEGYDADYIANKGKACYHCKTHLYSSLMAVAELAAAKGN-----------------IIGTDGKEKVILFNGTNKDDLRDDTRIGLKAAENFKVASPLAEITKDEVRLAAKALGLPNWQHAASPCLRSRLAFGVAATKENLERIDKAEAIVRRHLGLGPEVNLRVRAANPTRAAVAVDQS-LLEAVATHFPRIEEKILALGFKNVSFRAYRTGMMSG 282          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A024U4X0_9STRA (NAD_synthase domain-containing protein n=6 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4X0_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.660e-80
Identity = 149/297 (50.17%), Postives = 190/297 (63.97%), Query Frame = 3
Query:  399 VMNALRARVSSVGVPLDVGGKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            ++  L ARV   G    V   N++A+SGGVDSSLVA LVH+VFP+NS+AC+GVSAAL   QL LARDVA  IGIPL E  T EG DP Y+ N+GQSC++CK++LY++L  VAE+  A+S G                          VLFNG N DDK DPTR+GL AA +FQV SP++ LTKA VR +S+++ LPNWN+AASPCLRSRLAFGV A P+ LA +EKAE   R  + L    NLRVR +   +A +E+D         R +  I+ +   LGF +  VR F+SG+LSG
Sbjct:    2 LLENLLARVRHAGSSKHV---NVVAYSGGVDSSLVAALVHRVFPENSIACLGVSAALSQDQLTLARDVATAIGIPLWETRTSEGEDPRYVENKGQSCYYCKTNLYTTLSQVAERVKAQSPG-----------------------VAPVLFNGTNADDKFDPTRLGLVAATEFQVVSPLENLTKASVRQISKQIGLPNWNYAASPCLRSRLAFGVAANPDHLARIEKAEHAVRSTVALTPVDNLRVRFLAHNRAAVELDAATVRALLPRQVDAIQVICKELGFDDAIVRPFKSGSLSG 272          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A7S2W2V8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V8_9STRA)

HSP 1 Score: 265 bits (677), Expect = 2.270e-80
Identity = 149/270 (55.19%), Postives = 177/270 (65.56%), Query Frame = 3
Query:  456 GKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRL-ILPLGFGEVNVR 1262
            GKNI+AFSGGVDSSLVA LVH+V P +SLAC G+SA+LP AQL LAR VA HIGI + EV T EGS P Y+ANEG +C+HCKS LY++L AVA  A     G   T                     VVL+NG N DD+RDPTRVGL+AA  FQVASP+  L+K EVR  ++ L LPNWNHAASPCLRSRLA GV AT E L  +E AE   R ++   V HNLRVR +  +KA++EVD  E LE       D +R  +L LGF +V VR
Sbjct:   21 GKNIVAFSGGVDSSLVAALVHRVAPASSLACTGISASLPEAQLDLARHVAEHIGIQMREVPTSEGSHPEYLANEGMACYHCKSELYTALGAVARFASGVGTGGPATP--------------------VVLYNGTNADDQRDPTRVGLRAAEHFQVASPVSHLSKDEVRQAAKHLGLPNWNHAASPCLRSRLALGVSATDETLRRIESAERFVRSIVPFDVHHNLRVRLLAKQKAVVEVDS-EKLELTEGLFDDTKRTELLSLGFAKVEVR 269          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A485LSD2_9STRA (Aste57867_23475 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSD2_9STRA)

HSP 1 Score: 262 bits (670), Expect = 9.150e-80
Identity = 144/280 (51.43%), Postives = 184/280 (65.71%), Query Frame = 3
Query:  462 NIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALP----DIRRLILPLGFGEVNVRAFRSGALSG 1289
            N++A+SGGVDSSLVA +VH+VFP NS+AC+GVSAALPA QL +AR VA HIGIPL E  T EG+DP Y+ N+G+SC++CK++LY++L  V      +   E                       K +LFNG N DDK DPTR+GL AA++F V SP++ L K  VR +S+EL LPNWN+AASPCLRSRLAFGV AT + LA +EKAEE  R  L L  + NLRVR + G +A +EVD    L+K    LP     ++      GF  V+VRAF+SG+LSG
Sbjct:   19 NVVAYSGGVDSSLVAAIVHRVFPDNSIACLGVSAALPAEQLLVARGVAQHIGIPLWETPTTEGNDPRYVENKGKSCYYCKTNLYTTLNQVVSHIKTQMPAE----------------------AKPILFNGTNADDKLDPTRLGLVAASEFHVVSPLEALAKTSVRELSKELGLPNWNYAASPCLRSRLAFGVAATRDHLARIEKAEETVRSHLALTRADNLRVRFLAGNRAAIEVD----LKKLESLLPTDIHSVQEACEKFGFAAVDVRAFKSGSLSG 272          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A4D9D8U2_9STRA (Asparagine synthetase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8U2_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.100e-78
Identity = 154/300 (51.33%), Postives = 185/300 (61.67%), Query Frame = 3
Query:  456 GKNIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXK--------VVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLD--------------LGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIR-RLILPLGFGEVNVRAFRSGALS 1286
            G N+IA+SGGVDSSLVA LV QVFP NS+ACIG+SA+LP  QL LAR VA HIGIPL E+ T EG+ P Y+AN G SCFHCK+HLY++L+AVA   G    G   ++                            V LFNG N DD+RDPTRVGLKAA  F+V SPID LTK EVR +++ + LPNW HAASPCLRSRLAFGV A    L  VE AE + +  L               LGV HN+RVR M   KA++E+D  E LE A   L     R    LGF EV++RAF+SG++S
Sbjct:   35 GTNLIAYSGGVDSSLVAALVRQVFPSNSVACIGLSASLPDNQLTLARQVAAHIGIPLREIPTYEGAAPEYVANRGMSCFHCKTHLYTALQAVAAVVGTHMNGPLSSNFLHSTQGGSTETLQHVKMNGADASAPSVVALFNGTNADDRRDPTRVGLKAATKFKVRSPIDHLTKEEVRLLAKAMNLPNWQHAASPCLRSRLAFGVPALEAHLRRVETAERIVKATLGGKFDDKEGEGGLSKLGVHHNVRVRLMARGKAMIELDV-ELLESAASYLSTFEGRFKKELGFTEVSLRAFKSGSVS 333          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A6G0W843_9STRA (Asparagine synthetase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W843_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.050e-75
Identity = 135/276 (48.91%), Postives = 181/276 (65.58%), Query Frame = 3
Query:  462 NIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            N++AFSGGVDSSLVA +VH+ FP+NS+AC+GVSAA+PA QL LAR++A +IGIPL E  T EG DP Y+ N GQSC++CK++LY++L  VA     +S   E T                      +L+NG N DDK DPTR+GL AA +F+V SP++ LTKAEVR  S+EL LPNWN+AASPCLRSRLAFGV AT E L+ +E+AE   R ++ L  S N+RVR +   +A +E+D           +   + +   +GF +  VR F+SG++SG
Sbjct:   19 NVVAFSGGVDSSLVAAVVHKTFPENSIACLGVSAAVPADQLDLAREIARYIGIPLWETPTSEGQDPRYVENIGQSCYYCKTNLYTTLNQVASHV--KSNIPEGTVP--------------------ILYNGTNSDDKLDPTRLGLIAANEFRVVSPLEDLTKAEVRQASKELGLPNWNYAASPCLRSRLAFGVSATKEHLSRIERAERAIRSMMALKPSDNMRVRFLAQNRAAVELDASRQQSLLPEEVQAAQEICKQIGFVDAIVRPFKSGSVSG 272          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: A0A225W4A0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4A0_9STRA)

HSP 1 Score: 250 bits (639), Expect = 9.800e-75
Identity = 145/277 (52.35%), Postives = 181/277 (65.34%), Query Frame = 3
Query:  462 NIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAE-SRGEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            N++AFSGGVDSSL A LV QVFP  S ACIG SAAL + QL+ ARDVA HIG+PL E  T E    GY++N+G+SC++CK+ LYS+L  VAE A  E  + + DT                    K VL+NG N DD+ DPTRVGL AA++F V SP+  LTK EVR V++ L LPNWN AASPCLRSRL FGV+AT + L  VEKAE   R L+ L    ++RVR + G KA +E+D  + LEKA+     I   +  LGF  V++RAFRSG+LSG
Sbjct:   32 NVVAFSGGVDSSLAAALVFQVFPHTSAACIGRSAALSSVQLQQARDVATHIGVPLWECRTEEAKLEGYVSNKGKSCYYCKTTLYSTLNQVAEFAWNELQQVQGDTDKM-----------------KPVLYNGTNADDQLDPTRVGLVAASEFDVVSPLSGLTKQEVRDVAKYLGLPNWNAAASPCLRSRLQFGVEATQQHLHRVEKAEAFVRELIRLEPQMSMRVRFLAGNKAAVELDK-DALEKALHQFDIINEELRRLGFNAVDIRAFRSGSLSG 290          
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Match: D0NJX4_PHYIT (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0NJX4_PHYIT)

HSP 1 Score: 249 bits (636), Expect = 2.400e-74
Identity = 146/278 (52.52%), Postives = 182/278 (65.47%), Query Frame = 3
Query:  462 NIIAFSGGVDSSLVACLVHQVFPQNSLACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSCFHCKSHLYSSLEAVAEQAGAESR--GEEDTSXXXXXXXXXXXXXXXXXXXKVVLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPNWNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRAMHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG 1289
            N++AFSGGVDSSL A LV QVFP    ACIG SAAL + QL+ AR+VA+HIG+PL E  T E    GY+AN+G+SC++CK+ LYS+L  VAE A  E +  GEE                      K VL+NG N DD+ D TRVGL AA +F+V SP+  LTK EVR V++ L LPNWN AASPCLRSRL FGV+AT + L  VEKAEE  R L+ L    ++RVR + G KA +E+D  E LEKA+     I   +  LGF +V++RAFRSG+LSG
Sbjct:   32 NVVAFSGGVDSSLAAALVFQVFPDTGAACIGRSAALSSVQLRQAREVASHIGVPLWECHTDEAKLEGYVANQGKSCYYCKTTLYSTLNQVAEFAWQEMQQHGEE---------------------IKPVLYNGTNADDQLDLTRVGLVAATEFEVVSPLSGLTKQEVRDVAKYLGLPNWNAAASPCLRSRLQFGVEATQQHLHRVEKAEEFVRELVHLEPQMSMRVRFLAGNKAAVELDT-EGLEKAIPHFDVIDAELRRLGFNDVDIRAFRSGSLSG 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10585.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK8_ECTSI2.090e-13671.61Asparagine synthetase domain-containing protein n=... [more]
A0A836CNR6_9STRA1.010e-8955.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PUF6_HETAK2.130e-8654.55Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A024U4X0_9STRA1.660e-8050.17NAD_synthase domain-containing protein n=6 Tax=Aph... [more]
A0A7S2W2V8_9STRA2.270e-8055.19Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A485LSD2_9STRA9.150e-8051.43Aste57867_23475 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9D8U2_9STRA2.100e-7851.33Asparagine synthetase domain-containing protein n=... [more]
A0A6G0W843_9STRA2.050e-7548.91Asparagine synthetase domain-containing protein n=... [more]
A0A225W4A0_9STRA9.800e-7552.35Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
D0NJX4_PHYIT2.400e-7452.52Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10585contigH-paniculata_contig10585:253..5939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score416.4
Seed ortholog evalue1.3e-113
Seed eggNOG ortholog2880.D7FVK8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA processing
EggNOG OGs2RYIH@2759,COG1606@1
Ec32 ortholog descriptionRossmann-like alpha/beta/alpha sandwich fold
Ec32 orthologEc-15_003670.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1848
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10585.382.1prot_H-paniculata_contig10585.382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10585 716..5550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928761.5205972-UTR-H-paniculata_contig10585:252..7151622928761.5205972-UTR-H-paniculata_contig10585:252..715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10585 253..715 -
1691480609.7668946-UTR-H-paniculata_contig10585:252..7151691480609.7668946-UTR-H-paniculata_contig10585:252..715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10585 253..715 -
1622928761.6031172-UTR-H-paniculata_contig10585:5550..59391622928761.6031172-UTR-H-paniculata_contig10585:5550..5939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10585 5551..5939 -
1691480609.8410435-UTR-H-paniculata_contig10585:5550..59391691480609.8410435-UTR-H-paniculata_contig10585:5550..5939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10585 5551..5939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928761.5329518-CDS-H-paniculata_contig10585:715..9341622928761.5329518-CDS-H-paniculata_contig10585:715..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 716..934 -
1691480609.7785072-CDS-H-paniculata_contig10585:715..9341691480609.7785072-CDS-H-paniculata_contig10585:715..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 716..934 -
1622928761.5460353-CDS-H-paniculata_contig10585:1793..18831622928761.5460353-CDS-H-paniculata_contig10585:1793..1883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 1794..1883 -
1691480609.7878592-CDS-H-paniculata_contig10585:1793..18831691480609.7878592-CDS-H-paniculata_contig10585:1793..1883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 1794..1883 -
1622928761.557682-CDS-H-paniculata_contig10585:2175..22981622928761.557682-CDS-H-paniculata_contig10585:2175..2298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 2176..2298 -
1691480609.8009958-CDS-H-paniculata_contig10585:2175..22981691480609.8009958-CDS-H-paniculata_contig10585:2175..2298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 2176..2298 -
1622928761.5720088-CDS-H-paniculata_contig10585:2521..25881622928761.5720088-CDS-H-paniculata_contig10585:2521..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 2522..2588 -
1691480609.8122032-CDS-H-paniculata_contig10585:2521..25881691480609.8122032-CDS-H-paniculata_contig10585:2521..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 2522..2588 -
1622928761.582573-CDS-H-paniculata_contig10585:3660..39311622928761.582573-CDS-H-paniculata_contig10585:3660..3931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 3661..3931 -
1691480609.8210971-CDS-H-paniculata_contig10585:3660..39311691480609.8210971-CDS-H-paniculata_contig10585:3660..3931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 3661..3931 -
1622928761.5938907-CDS-H-paniculata_contig10585:5324..55501622928761.5938907-CDS-H-paniculata_contig10585:5324..5550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 5325..5550 -
1691480609.8304207-CDS-H-paniculata_contig10585:5324..55501691480609.8304207-CDS-H-paniculata_contig10585:5324..5550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10585 5325..5550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10585.382.1

>prot_H-paniculata_contig10585.382.1 ID=prot_H-paniculata_contig10585.382.1|Name=mRNA_H-paniculata_contig10585.382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=332bp
MRNVMNALRARVSSVGVPLDVGGKNIIAFSGGVDSSLVACLVHQVFPQNS
LACIGVSAALPAAQLKLARDVANHIGIPLTEVVTGEGSDPGYIANEGQSC
FHCKSHLYSSLEAVAEQAGAESRGEEDTSAATAAAAQICSNGGNSRRRKV
VLFNGINKDDKRDPTRVGLKAAADFQVASPIDILTKAEVRAVSRELRLPN
WNHAASPCLRSRLAFGVQATPERLAIVEKAEEVARHLLDLGVSHNLRVRA
MHGEKALLEVDDGETLEKAMRALPDIRRLILPLGFGEVNVRAFRSGALSG
GGDVGTGMVSSVANAGHVEMSRVVGTGHKAV*
back to top

mRNA from alignment at H-paniculata_contig10585:253..5939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10585.382.1 ID=mRNA_H-paniculata_contig10585.382.1|Name=mRNA_H-paniculata_contig10585.382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5687bp|location=Sequence derived from alignment at H-paniculata_contig10585:253..5939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTAGAACATGACACATATTCCCGCGGGCAGGAAATTAGAAATCTATCA TACATGTTGTAGATGGTCATGGGAGATGGCAATAGTACTATATCTCCCGT AGGCAGTTGGATATAATAGATGGTAGAGATTTAGTATTTGTTGTGTTATT TGCCATCAAATGCTTCATCGTGTTGTTGGCTGTCTGGTATATCATTGGTT GTTTTGAAGGGGTGTGTATTTGATGGGCTATATATTTATTATATATTTTG AAGTATATCTATAATCACCTGATCAGTCAGTATGACGAACGGGAATCGGC ATATTAATACATCTAGTGTGCGTATTTAATCGCCATATATTTCATTTCGT CTGTTATGAAATGCCCGGTATCATTCATATGAGAGAACCATGCGGAACGT AATGAACGCGTTGCGCGCTCGGGTGTCCTCGGTGGGGGTCCCTTTGGATG TTGGAGGGAAAAATATTATTGCATTTTCGGGCGGAGTGGATTCTTCTCTG GTTGCGTGCTTGGTCCACCAGGTCTTCCCTCAAAACAGCCTCGCATGCAT TGGAGTCTCGGCTGCCCTTCCTGCAGCACAGTTGAAGCTCGCCCGTGATG TGGCTAACCATATAGGTGGGTGGTGTGCCTAGCAACCTTGTCTGCATAGT TAGTTTCATTGTTGAGGTGATTAATGGCTGTGGCATTGATTTTCATGTGA ACACCTAGAGGTGATATGTGCTCTGGGATACAAAGATCGATGTTGTCTGT ATTGATTGTATTTGTGCGATAGTTGTATACGGTGTATTGTACCTCTGTGT GAGTTCATGTAATGTATTTTGGAACATTGGTTTGGTTGAAAATTGCCGCC TATATCTTGTTATGGGTCGATTTGTGCTCCACCTCAACGCAAGAGTCTGT CGCGGAGAACGCATAGGCATAATTCATTACTATTCGCCTTTGGGCCAATG TCAGCGAGGAGTAGAGCTACCACATCGTGGTAACTGTGTAGAGGATGATA CTGTCTCTCCTTGAATCGCGACTCCAGGCCTTCTGATAAGTCGGGTCCCA GTAGTCTGACACATGCAATATGGCAAGGACGTATTTCTCATGGGCGTTCG ATTATTTCCTTTGAAACTCGGGTTACAGAAGTCTAGCCATTTCAATTGGC AAAAAGAAAAATCAAATGGCCTCAAAAGTCGAGTTTCTGACACCCACAAG AAACAGTGTAAGAAGGGCGTTACTTACACGTGTTCGCGGAGATCAACTTA CTCGTGGTTCTTGTGGTATATTCAAAATTCACGCAGCCGAATGTGCAACA CTAGTGACTCAGGATGTGCAATGGACCCACTAAAAATCAAGTTTAGGGTA GGAGGGCAAGGATGACAATAATAGCAGTCGATATCATCCTCATAAAATAA ACTCTGGGCTGGCGAACGCTCTGGCACTTCGGTCCCCCGTCCAGACGTTG TAGCGATGCAAGGTCAACTGTCTGTGAAGATGGCATGTGTGACGCGCACG TTGACTTGCATTATTTGTTACTTGCCCTTACGAAACCCGCATCTCTGAAA TGTAGATATTCGATAGTACACGACTGATGCAGAAGTCCCCCGTAACGCCG GCATTTTCTTTACATTTACAGTGAAGAGACAACTCTCGGCGTGCGCACTG GTGTGCTTTTTCGTTTGCACCTGCTTTGTTCAGTGGGATTTGGGGGTCGA ATTGACTGGAGAGTATGCAACGCCTTGATGGCAGCTACAGTATACAACAG AAGCGAAATTTGGTTTCATAATGACTCTGACTTCTGCGACTTTATCTACT TGAACACTTCAATAACCGGGTGGTGTTATTCTTAATGCCAGCAATATTAA TACTAACAATCCCCCCTCCCCACCTACATCACTGACCCAAGACGTTCACG CTGAAAACATCCACTCACTTGCCGCCCTCTCGCGGACCTTCCATGGAACA TGGAATTCCTTCCGACCACAACCGGCGACCATACACATACATACACGCGC ACACAAAGGCATCCCTCTAACTGAGGTCGTGACGGGAGAAGGGTCAGATC CGGGCTACATCGCGAACGAAGGTCAGAGCTGCTTTCACTGCAAATCGCAC CTGTACTCCTCCCTCGAGGCCGTGGCCGAGCAGGCTGGCGCGGAGTCCCG AGGGGAAGAAGATACTTCTGCTGCTACAGCGGCAGCGGCGCAAATTTGTA GCAACGGTGGTAACAGCAGGCGACGGAAGGTAGTCCTATTCAACGGGATT AATAAGGACGACAAGAGAGATCCCACGAGGTGCGGGATTACGTTTATAAC GCAGCGGTTGTGGTCTTGCTTTTCCTCATGGTTCGTTGAGAGAGGTAAAT ACTGTACTGATTCTTGTCTATAGTCTTGGTCGTATGTCCTGTAGTGCATA TATTTATCTGTTGTAGAAACACCTTTTTTCAGTTGCAGGCCCTTGTTTAT AACGGTAAAATCAATCCATTTTCATGTTGGTCCATGATTCAGGGCTTGTT GCATCTCTCCGTTTGTACAGGCATGTCTCCTGGAGAATCGCAAGATTTCG TTTCTTGGAAATTTTCCGCCGATGAACGAAATGGAAGTTTCGGAATGAGC GACACACGAACTAAAGTACCCACTCCTGTCCATTCGTTTCGTGAGTATTG TCAGTGGTCGTGGTGGTTCGGGGCATGTATAATACACGAGCTCATTCTGA AACTCAGGCGAATACTGTCAATTTTTTGTGAAAGCCCTATAAGTATTCAT ATTTGTCCGGGGAGTGAAACGTTTTGAGCCATATGTGGCAACGTAGGAAC AAAGCTCCCTCCTCTCGAGGACGCGTGGGCTAGTAGTCCAACAACTGAAT CATCCTATAGTAGGGGGGGAGTCAGTTGCTGAACGAAGGCCGCTTGGCGA AAAGCGCCCCAAAAACAACGCGAATCGAAATCATGTCAATTGCATGTGCT TTGTGCATCCCCTAAAAGTGCACAGTTCACGAGTTGAAATGGGATTTCTG TTGAAGGGTGGGAAACAAATGCAAAAATAATGGGAAAGCGCCCGAACTCT TTCTCAAAGCGACTCCTTCATTAAACAAAGCGGCTCATTTATCCCCCCCT ACTGTAGCATGATTCAACTACGACATGCAGAACATCATTACCCCCCACCC CCCCCCCGCGCGCTTTTGAAGGAACGGTTGTCCATCGGCGATCGCACAGG TCATAACGGTACTCCCTCCCCGCTAAGACCCGTGGTACCGTACTAACGGC TAAGCCATACAAAATGTAAGTGTCCTTCCTTCCCCCCACCTTTGCCTTTG CCCTCTCTTTCCCGTCCTATGTGCGTGCTTACTGTGGGCTCTAATCTGTA GGGTGGGTCTGAAAGCAGCGGCAGATTTTCAAGTTGCTAGCCCAATAGAT ATCCTGACCAAGGCAGAGGTGAGCGGCATACAATGGACAGTTATTTCGTG CTTGAATAAGGATACTGTAATGGACCAGACCCGAACGTGGAGACACATGA AATAGTACGGCTACAGTGTGTTTTGGAGACGTTCTGGAAACTGTTGATAT CATGGAAAACAGTTGTTGAGAATACAGCTGGCACAATGGAAACGCGGCGC CTACTACCCCACCCTTCCCCCTCTGTGCGGGCCAACTTCAGGTTCGAGCC GTGTCTCGCGAGCTGAGGTTGCCCAATTGGAATCACGCCGCGTCTCCCTG CCTGCGCTCACGGCTGGCCTTTGGTGTGCAGGCCACGCCAGAGAGACTGG CTATCGTTGAGAAGGTGATCGACGCCACACATCCCACACGCCTTCTGATG GTGTGAAGTATATTCCCGAGTATCCGCATCATCAATACATCGATGAGCAG CATGAAGTCGTGGTCTTTTATGGCAACCCTTTTTTTAGCGTACTTGATGC ATGCGCATTCGTGGTGGCGGTGACAGTCGTGATCGTACGCCAAAAGGCAA GCAGCACTAGTGTAGGTGTATGTGCTTCCGCTTCGGTAGTGAATGTATCA ACACGCGCGAGTTTCAACGCGCTAAAAGCACATCCCACCACGGCTGCGGT TTGCAGGCAGAGGAGGTGGCGAGGCATTTGTTGGATCTGGGCGTGAGCCA CAACTTGCGTGTTCGGGCGATGCACGGCGAGAAGGCCTTGTTGGAGGTAT GCTGTGTGTATTATGTATTATGCTCCCTGTATGTACTGCATGTACATACG TGAGCTACTATGCCGTTGGTAATGTTTTTATAGGTGGTGATGATGTTGCT ATTTTGCCGAACACCTTGTTCACTTTTTAATGTAGTTGTTACCCCGGGCG GGCAAGGCTTATGTGGCGGACTTGTGTGTCGTATGGATGGTAAGTATTCT CTATCTCTCCAGCGAAGCACCCAATTCCTTATCTGCTGTGATACGTCCAT GTACACGCCATATTTTGTAGGCCTCGGACCGAGGCGAAACATGGATCCTG TACGCCATTATGCACACAGAATTGAGAAAACAATCAAATGGAGATATTTC TTGATTCACTACTGTTGTAAGTGAAGAAGAGGATACCCCCTTTGGTTTAT GGAGGTATGTCTGATCGTGTTGCGCAGAGCTTCCTGTGATGATAGCATCA TGGGATTGGTGGTGGGAAGGGTGATTGCTAGCCGTATTTCGTCGATTTTT ATTCCGTTGGCCCGGTGTTCAATTTCTCCATTACGACGTCTTCAACAGTT TACCCTGCATGAAAGGCCCAAAAAGTTTGAAGTTGAACTAAGGTTTATGC AAATAGAGTAGGTTCAAAACCACGAAAAGAATATGCACTTTAAAATGTTG GCCAACAATCAGTAAACCAGTACTAGAAAATGTGCAAAAAGCTATCAAGT TTTTTAATACGAGTTGAACTCCCTAAATGGGACAGTTTCATCGAGCTCGT CTATTCCTGTTTCATCATTATATTTCCTGCCTGCACTGGCGTGCCCCATT TCTTGAAACAATTTCGCTCGTCGTTTCTTTTGCTTCTATGGTTGAATAAT AATAGGTGGACGACGGAGAAACTTTAGAAAAAGCCATGCGGGCGTTGCCG GATATCCGAAGGCTTATCCTACCCCTGGGCTTCGGGGAAGTGAATGTTAG AGCATTTCGAAGCGGCGCGTTAAGCGGTGGCGGCGACGTAGGAACAGGGA TGGTATCTAGCGTGGCCAACGCTGGACACGTAGAGATGTCCCGGGTTGTT GGAACAGGCCATAAAGCAGTATAGCACGGCAAAGCTATGCTTGTGTTCCT TTATATTTTTGTTGTCACTTCACCTGTCGTATCTATCGGTCTTTTGGCAA GGGGTGAGTAGTGGGAACTGCAAACGACTATTGAGTTTGCCCCGACAGTT TCAGAGGTGTGCAAGAAGGGATGCTTTATATTGGCCTCCATAAGAAGGAA TTTAACGAACATCAAGGTTTAGAGTAAGATGTATTTACTGTCCAACTTAA CCCACGTCGACAGGGGAAGTTGTTGTGTAGCTCTTGTTGGGTGATGAATT GCTGTCGCTGTCACGAGATATATGTGACATTATTCAAATACGCCGAAGGC GTACACTTCGTCGGTTAGTGTATGTTGCCAGTAACAGAGTCACGGCCAAG TCCGTGCAGACCTACGGACTCTCTGCGCTCGCAATTTCGTGTAGATATAT CATTTATGGAAATGAATATACATACATCTTTATATAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10585:253..5939-

>mRNA_H-paniculata_contig10585.382.1 ID=mRNA_H-paniculata_contig10585.382.1|Name=mRNA_H-paniculata_contig10585.382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at H-paniculata_contig10585:253..5939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAACGTAATGAACGCGTTGCGCGCTCGGGTGTCCTCGGTGGGGGT
CCCTTTGGATGTTGGAGGGAAAAATATTATTGCATTTTCGGGCGGAGTGG
ATTCTTCTCTGGTTGCGTGCTTGGTCCACCAGGTCTTCCCTCAAAACAGC
CTCGCATGCATTGGAGTCTCGGCTGCCCTTCCTGCAGCACAGTTGAAGCT
CGCCCGTGATGTGGCTAACCATATAGATGCGGAACGTAATGAACGCGTTG
CGCGCTCGGGTGTCCTCGGTGGGGGTCCCTTTGGATGTTGGAGGGAAAAA
TATTATTGCATTTTCGGGCGGAGTGGATTCTTCTCTGGTTGCGTGCTTGG
TCCACCAGGTCTTCCCTCAAAACAGCCTCGCATGCATTGGAGTCTCGGCT
GCCCTTCCTGCAGCACAGTTGAAGCTCGCCCGTGATGTGGCTAACCATAT
AGGCATCCCTCTAACTGAGGTCGTGACGGGAGAAGGGTCAGATCCGGGCT
ACATCGCGAACGAAGGTCAGAGCTGCTTTCACTGCAAATCGCACCTGTAC
TCCTCCCTCGAGGCCGTGGCCGAGCAGGCTGGCGCGGAGTCCCGAGGGGA
AGAAGATACTTCTGCTGCTACAGCGGCAGCGGCGCAAATTTGTAGCAACG
GTGGTAACAGCAGGCGACGGAAGGTAGTCCTATTCAACGGGATTAATAAG
GACGACAAGAGAGATCCCACGAGGCATCCCTCTAACTGAGGTCGTGACGG
GAGAAGGGTCAGATCCGGGCTACATCGCGAACGAAGGTCAGAGCTGCTTT
CACTGCAAATCGCACCTGTACTCCTCCCTCGAGGCCGTGGCCGAGCAGGC
TGGCGCGGAGTCCCGAGGGGAAGAAGATACTTCTGCTGCTACAGCGGCAG
CGGCGCAAATTTGTAGCAACGGTGGTAACAGCAGGCGACGGAAGGTAGTC
CTATTCAACGGGATTAATAAGGACGACAAGAGAGATCCCACGAGGGTGGG
TCTGAAAGCAGCGGCAGATTTTCAAGTTGCTAGCCCAATAGATATCCTGA
CCAAGGCAGAGGGTGGGTCTGAAAGCAGCGGCAGATTTTCAAGTTGCTAG
CCCAATAGATATCCTGACCAAGGCAGAGGTTCGAGCCGTGTCTCGCGAGC
TGAGGTTGCCCAATTGGAATCACGCCGCGTCTCCCTGCCTGCGCTCACGG
CTGGCCTTTGGTGTGCAGGCCACGCCAGAGAGACTGGCTATCGTTGAGAA
GGTTCGAGCCGTGTCTCGCGAGCTGAGGTTGCCCAATTGGAATCACGCCG
CGTCTCCCTGCCTGCGCTCACGGCTGGCCTTTGGTGTGCAGGCCACGCCA
GAGAGACTGGCTATCGTTGAGAAGGCAGAGGAGGTGGCGAGGCATTTGTT
GGATCTGGGCGTGAGCCACAACTTGCGTGTTCGGGCGATGCACGGCGAGA
AGGCCTTGTTGGAGGCAGAGGAGGTGGCGAGGCATTTGTTGGATCTGGGC
GTGAGCCACAACTTGCGTGTTCGGGCGATGCACGGCGAGAAGGCCTTGTT
GGAGGTGGACGACGGAGAAACTTTAGAAAAAGCCATGCGGGCGTTGCCGG
ATATCCGAAGGCTTATCCTACCCCTGGGCTTCGGGGAAGTGAATGTTAGA
GCATTTCGAAGCGGCGCGTTAAGCGGTGGCGGCGACGTAGGAACAGGGAT
GGTATCTAGCGTGGCCAACGCTGGACACGTAGAGATGTCCCGGGTTGTTG
GAACAGGCCATAAAGCAGTATAGGTGGACGACGGAGAAACTTTAGAAAAA
GCCATGCGGGCGTTGCCGGATATCCGAAGGCTTATCCTACCCCTGGGCTT
CGGGGAAGTGAATGTTAGAGCATTTCGAAGCGGCGCGTTAAGCGGTGGCG
GCGACGTAGGAACAGGGATGGTATCTAGCGTGGCCAACGCTGGACACGTA
GAGATGTCCCGGGTTGTTGGAACAGGCCATAAAGCAGTATAG
back to top