mRNA_H-paniculata_contig16760.3812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16760.3812.1
Unique NamemRNA_H-paniculata_contig16760.3812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16760.3812.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 LPLAARDIRALAGEARSLIYDVCFSPVRQRLDCVPSLTTWAEQ 129
            LP  AR++RALA +ARSL++DVCF PV  RLD VP+L +W E+
Sbjct:  662 LPAPAREVRALAADARSLVFDVCFKPVTARLDTVPTLVSWQEE 704
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16760.3812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF5_ECTSI5.220e-1060.47Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16760contigH-paniculata_contig16760:823..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D7FUF5
Preferred nameCOG7
KEGG koko:K10878,ko:K17586,ko:K20294
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0000916,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032504,GO:0032506,GO:0032588,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036063,GO:0036211,GO:0036213,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048609,GO:0050821,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG4182@1,KOG4182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400,ko04131
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929327.81059-CDS-H-paniculata_contig16760:822..9601622929327.81059-CDS-H-paniculata_contig16760:822..960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16760 823..960 -
1691480817.6576664-CDS-H-paniculata_contig16760:822..9601691480817.6576664-CDS-H-paniculata_contig16760:822..960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16760 823..960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16760.3812.1prot_H-paniculata_contig16760.3812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16760 823..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16760.3812.1

>prot_H-paniculata_contig16760.3812.1 ID=prot_H-paniculata_contig16760.3812.1|Name=mRNA_H-paniculata_contig16760.3812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
LPLAARDIRALAGEARSLIYDVCFSPVRQRLDCVPSLTTWAEQTIS
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mRNA from alignment at H-paniculata_contig16760:823..960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16760.3812.1 ID=mRNA_H-paniculata_contig16760.3812.1|Name=mRNA_H-paniculata_contig16760.3812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig16760:823..960- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCCCTTGCGGCAAGAGACATTCGAGCACTCGCGGGAGAAGCCCGGTC
TTTGATCTACGACGTCTGTTTTTCCCCCGTCCGGCAAAGGCTCGACTGCG
TCCCATCCCTGACAACATGGGCGGAGCAGACGATTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig16760:823..960-

>mRNA_H-paniculata_contig16760.3812.1 ID=mRNA_H-paniculata_contig16760.3812.1|Name=mRNA_H-paniculata_contig16760.3812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig16760:823..960- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCCCTTGCGGCAAGAGACATTCGAGCACTCGCGGGAGAAGCCCGGTC
TTTGATCTACGACGTCTGTTTTTCCCCCGTCCGGCAAAGGCTCGACTGCG
TCCCATCCCTGACAACATGGGCGGAGCAGACGATTAGCTTGCCCCTTGCG
GCAAGAGACATTCGAGCACTCGCGGGAGAAGCCCGGTCTTTGATCTACGA
CGTCTGTTTTTCCCCCGTCCGGCAAAGGCTCGACTGCGTCCCATCCCTGA
CAACATGGGCGGAGCAGACGATTAGC
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