mRNA_H-paniculata_contig16744.3803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16744.3803.1
Unique NamemRNA_H-paniculata_contig16744.3803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 6.600e-125
Identity = 182/217 (83.87%), Postives = 197/217 (90.78%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLFESLFATMADTSADFTGVFRELAEMTPDGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGAPK 651
            YEE VRSTAELV+KWQCVGFTHGVLNTDNMS+LGLTIDYGPYGFMDFFDP+FVPNGSD GGRYSY++QPE+CKWNL KFAEAL PALPL DS AALEKYD ++K YY+EGMRRKLGLFS EE DDGLFESLFATMADTSADFTG FRELA++ P GDV+TV+KAL AQCAGPKIKAK LRRA+DIGRP+IP  QLQGLWAMAQ NPEALA RF APK
Sbjct:  361 YEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGGGRYSYERQPEMCKWNLHKFAEALAPALPLSDSTAALEKYDGLFKRYYEEGMRRKLGLFSVEEDDDGLFESLFATMADTSADFTGTFRELAQLAPGGDVDTVSKALAAQCAGPKIKAKALRRAVDIGRPSIPPQQLQGLWAMAQGNPEALAQRFSAPK 577          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA)

HSP 1 Score: 247 bits (630), Expect = 4.130e-75
Identity = 125/219 (57.08%), Postives = 150/219 (68.49%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLFESLFATMADTSADFTGVFRELAEMTP----DGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGA 645
            YE+VV+ TAEL + WQCVGFTHGVLNTDNMSLLGLTIDYGPYGFM+ FD  +VPNGSD  GRY Y  QPEICKWNL KF EAL P LP + +   L+ YDD+Y+  Y   MR KLGL + E  D  LF SLF  MA T+ADFTG FR L +          + + A AL + CA P++ A+ + RA  IGRP  P  +L+ LWA+ Q NPEA+A +FGA
Sbjct:  266 YEDVVKRTAELAAAWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMEHFDRDYVPNGSDGTGRYRYQDQPEICKWNLGKFLEALLPVLPRDAAETTLDTYDDIYERAYASRMRAKLGLTTAEPGDAALFASLFDAMAATAADFTGTFRALIDFAAGPRDSAAITSSAAALASICATPEVLARSIARAQRIGRPGAPPDRLRALWALVQSNPEAVAAQFGA 484          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: I2CP48_NANGC (Selenoprotein O (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP48_NANGC)

HSP 1 Score: 236 bits (603), Expect = 1.490e-71
Identity = 131/223 (58.74%), Postives = 153/223 (68.61%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEK-YDDMYKSYYDEGMRRKLGLFSREEADDG------LFESLFATMADTSADFTGVFRELAEMTPDG-DVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGA 645
            Y EVV  TA LV+ WQ VGFTHGVLNTDNMS+LGLTIDYGPYGFMDFFDP F+PNGSD+GGRY+Y KQPEICKWNL KFAEAL   LPL+ S   L   YDD Y   Y   MR+KLGL  RE   +G      L E LF TM +T+ADFT  F EL+ +  DG + E V KAL + CA P + A  L + L I RPT+P+ Q Q LWA+AQ++   +A  FGA
Sbjct:  327 YREVVAKTAGLVAAWQAVGFTHGVLNTDNMSVLGLTIDYGPYGFMDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDEYSRAYFFLMRKKLGL--REGGAEGGKEEEELVEKLFKTMEETAADFTMTFVELSRLERDGRNKEEVIKALASHCAPPSVLAASLTKKLRISRPTMPSGQTQQLWALAQQDRGKIAEIFGA 547          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.000e-67
Identity = 119/223 (53.36%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEK-YDDMYKSYYDEGMRRKLGLFSREEA----DDGLFESLFATMADTSADFTGVFRELAEMTPDGD--VETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGAP 648
            Y+EVV+ TA LV+ WQC GFTHGVLNTDNMS+LGLTIDYGP+GFM+++DP +VPNGSD+ GRYSY KQP+IC+WNL+K  EAL  ALP++ S A LE+ Y  +Y   Y+  M +KLGL+  ++     D  L  SLF TM   S+DFT  FR+LA   P     VE  A++L  Q A P +  KVLRR + + R  +   QLQ L  M +ENP  L  RFGAP
Sbjct:  321 YKEVVQKTARLVALWQCTGFTHGVLNTDNMSILGLTIDYGPFGFMEYYDPNYVPNGSDNAGRYSYTKQPDICRWNLMKLGEALQEALPMDQSRAILEQEYWKVYDRAYETRMLQKLGLWEDQQEVSLEDKQLISSLFDTMEACSSDFTNTFRQLAAFDPSSGEGVEVAARSLSKQSAPPGVLDKVLRRTMGLSRTRMDPRQLQALLQMLEENPAELEARFGAP 543          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: UPI001402BBC7 (protein adenylyltransferase SelO, mitochondrial n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402BBC7)

HSP 1 Score: 217 bits (553), Expect = 2.370e-63
Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADD-GLFESLFATMADTSADFTGVFRELAEMTPD-GDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFG 642
            + EVVR TA LV++WQCVGF HGVLNTDNMS+LGLTIDYGP+GFMD FDP +V NGSD GGRY+YD+QPE+C+WNL K AEAL P LP E S   L++Y  +Y++ Y   MRRKLGL   E+ DD GL  SL  TM  T ADFT  FR L+ +T + G VE +A  L  QCA      + ++RA    +P I   QL  L A+AQ NP+ L + FG
Sbjct:  311 FREVVRRTAHLVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFMDRFDPHYVCNGSDEGGRYAYDQQPEMCRWNLEKLAEALAPTLPTEQSRPVLDEYGALYEAAYLRKMRRKLGLGLLEQPDDAGLVTSLLETMQSTGADFTNSFRLLSRLTLEPGSVEELATLLCQQCA----TVEEMKRAY---KPRIDPRQLSLLLALAQANPQVLRM-FG 518          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A3Q2Z5B8_HIPCM (Selenoprotein O n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2Z5B8_HIPCM)

HSP 1 Score: 208 bits (529), Expect = 9.210e-60
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFRELAEMT--PDGDVET-------VAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
            + EV+R TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP+F+ N SD+ GRYSY  QP IC+WNL+K AEALDP LP + + A +E+Y D+Y S Y + MRRKLGL  ++E +D  L   L  TM +T ADFT  FR L+ ++   +G+ ET        A  L+ QCA        L       +PT+   +L  L +MAQ NP
Sbjct:  310 FREVMRRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPEFICNASDNSGRYSYQAQPAICRWNLVKLAEALDPELPPDRAKAVMEEYLDLYNSCYLDNMRRKLGLLKKQEPEDEILITELLQTMHNTGADFTNTFRSLSHISCPSEGESETEEELVRDAANLLLEQCAS-------LEELKAANKPTMDPRELAMLLSMAQSNP 518          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A3Q0RHN7_AMPCI (Selenoprotein O n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0RHN7_AMPCI)

HSP 1 Score: 205 bits (521), Expect = 1.090e-59
Identity = 109/216 (50.46%), Postives = 141/216 (65.28%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFRELAEMT------PDGDVETVAKA---LVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
            + EVV  TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY  QP IC+WNL+K AEAL P LP + + A L++Y D+Y S+Y E MR+KLGL  +E+ +D  L   L  TM +T ADFT  FR L++++       +G+ + V KA   L+ QCA        L       +PT+   +L  L +MAQ NP
Sbjct:  193 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLDEYMDLYNSFYLENMRKKLGLLKKEDPEDEILITKLLQTMHNTGADFTNTFRSLSQISCPTEGDGEGEEDCVKKATDLLMEQCAS-------LEELKAANKPTMDPRELAMLLSMAQSNP 401          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A668RTU6_OREAU (Selenoprotein O n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668RTU6_OREAU)

HSP 1 Score: 204 bits (518), Expect = 2.680e-59
Identity = 110/217 (50.69%), Postives = 142/217 (65.44%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLF-ESLFATMADTSADFTGVFRELA------EMTPDGDVETVAKA---LVAQCAG-PKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
            + EVV  TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY  QP IC+WNL+K AEAL P LP + + A LE+Y D+Y  +Y E MR+KLGL  +E+ +D +    L  TM +T ADFT  FR L+      E   +G+ ++V KA   L+ QCA   ++KA          +PT+   +L  L +MAQ NP
Sbjct:  159 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLEEYLDLYNRFYLENMRKKLGLLKKEDPEDEIMITKLLQTMHNTGADFTNTFRSLSLISCPTEENSEGEEDSVKKATDLLIEQCASIEELKAA--------NKPTMDPRELAMLLSMAQSNP 367          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A1A8SKC4_9TELE (Selenoprotein O n=12 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8SKC4_9TELE)

HSP 1 Score: 206 bits (525), Expect = 3.390e-59
Identity = 109/215 (50.70%), Postives = 138/215 (64.19%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFREL--------AEMTPDGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
            + EV+R TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SDS GRYSY  QP IC+WNL+K AEAL P LP E + A +++Y D++  +Y E MR+KLGLF +EE +D  L   L  TM +T ADFT  FR L        AE   + D++  A  L+ QCA        L       +PT+   +L  L ++AQ NP
Sbjct:  310 FREVMRRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDSSGRYSYQAQPAICRWNLVKLAEALAPELPAERAEAVMDEYLDLFNRFYLENMRKKLGLFVKEEPEDEMLITELLQTMHNTGADFTNTFRSLSLICCPTEAETGGEEDLKRTADLLLHQCAS-------LEELKAANKPTMDPRELAMLLSLAQSNP 517          
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: I3JW73_ORENI (Selenoprotein O n=34 Tax=Percomorphaceae TaxID=1489872 RepID=I3JW73_ORENI)

HSP 1 Score: 204 bits (520), Expect = 1.810e-58
Identity = 109/216 (50.46%), Postives = 139/216 (64.35%), Query Frame = 1
Query:    1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLF-ESLFATMADTSADFTGVFRELA------EMTPDGDVETVAKA---LVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
            + EVV  TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY  QP IC+WNL+K AEAL P LP + + A LE+Y D+Y  +Y E MR+KLGL  +E+ +D +    L  TM +T ADFT  FR L+      E   +G+ ++V KA   L+ QCA        L       +PT+   +L  L +MAQ NP
Sbjct:  310 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLEEYLDLYNRFYLENMRKKLGLLKKEDPEDEIMITKLLQTMHNTGADFTNTFRSLSLISCPTEENSEGEEDSVKKATDLLIEQCAS-------LEELKAANKPTMEPRELAMLLSMAQSNP 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV32_9PHAE6.600e-12583.87Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A836CN66_9STRA4.130e-7557.08Selenoprotein O n=1 Tax=Tribonema minus TaxID=3033... [more]
I2CP48_NANGC1.490e-7158.74Selenoprotein O (Fragment) n=1 Tax=Nannochloropsis... [more]
A0A7S2V3H2_9STRA1.000e-6753.36Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=... [more]
UPI001402BBC72.370e-6355.56protein adenylyltransferase SelO, mitochondrial n=... [more]
A0A3Q2Z5B8_HIPCM9.210e-6050.93Selenoprotein O n=2 Tax=Syngnathidae TaxID=72045 R... [more]
A0A3Q0RHN7_AMPCI1.090e-5950.46Selenoprotein O n=1 Tax=Amphilophus citrinellus Ta... [more]
A0A668RTU6_OREAU2.680e-5950.69Selenoprotein O n=1 Tax=Oreochromis aureus TaxID=4... [more]
A0A1A8SKC4_9TELE3.390e-5950.70Selenoprotein O n=12 Tax=Nothobranchiidae TaxID=40... [more]
I3JW73_ORENI1.810e-5850.46Selenoprotein O n=34 Tax=Percomorphaceae TaxID=148... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16744contigH-paniculata_contig16744:227..4465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue5e-103
Seed eggNOG ortholog2880.D8LIY8
Preferred nameSELENOO
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Uncharacterized ACR, YdiU/UPF0061 family
EggNOG OGsCOG0397@1,KOG2542@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size651
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16744.3803.1prot_H-paniculata_contig16744.3803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16744 227..4465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929326.8202384-CDS-H-paniculata_contig16744:226..3581622929326.8202384-CDS-H-paniculata_contig16744:226..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 227..358 -
1691480817.039966-CDS-H-paniculata_contig16744:226..3581691480817.039966-CDS-H-paniculata_contig16744:226..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 227..358 -
1622929326.832564-CDS-H-paniculata_contig16744:1391..14571622929326.832564-CDS-H-paniculata_contig16744:1391..1457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 1392..1457 -
1691480817.0503254-CDS-H-paniculata_contig16744:1391..14571691480817.0503254-CDS-H-paniculata_contig16744:1391..1457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 1392..1457 -
1622929326.8413541-CDS-H-paniculata_contig16744:2029..21441622929326.8413541-CDS-H-paniculata_contig16744:2029..2144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 2030..2144 -
1691480817.061097-CDS-H-paniculata_contig16744:2029..21441691480817.061097-CDS-H-paniculata_contig16744:2029..2144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 2030..2144 -
1622929326.8550768-CDS-H-paniculata_contig16744:3236..33641622929326.8550768-CDS-H-paniculata_contig16744:3236..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 3237..3364 -
1691480817.0686288-CDS-H-paniculata_contig16744:3236..33641691480817.0686288-CDS-H-paniculata_contig16744:3236..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 3237..3364 -
1622929326.8654392-CDS-H-paniculata_contig16744:4255..44651622929326.8654392-CDS-H-paniculata_contig16744:4255..4465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 4256..4465 -
1691480817.0763938-CDS-H-paniculata_contig16744:4255..44651691480817.0763938-CDS-H-paniculata_contig16744:4255..4465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16744 4256..4465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16744.3803.1

>prot_H-paniculata_contig16744.3803.1 ID=prot_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDP
QFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYD
DMYKSYYDEGMRRKLGLFSREEADDGLFESLFATMADTSADFTGVFRELA
EMTPDGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWA
MAQENPEALALRFGAPK
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mRNA from alignment at H-paniculata_contig16744:227..4465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16744.3803.1 ID=mRNA_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4239bp|location=Sequence derived from alignment at H-paniculata_contig16744:227..4465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAAGAGGTAGTCCGCAGCACGGCGGAGTTGGTTTCCAAGTGGCAGTG CGTGGGATTCACGCACGGGGTGCTAAACACGGATAACATGAGCCTCCTCG GGTTGACGATCGATTACGGACCGTACGGATTTATGGACTTCTTCGACCCG CAGTTCGTGCCCAACGGCTCGGATTCAGGGGGGCGTTATTCGTACGACAA GCAGCCCGAGGTATGTTGTATGTGGTGGTCGTACTCCACAGCGAAGGCTG GGGGAAGTGTGCTGTGTGTGATGACTCCGGTAGCGTTATTGGTGCGTTTT TGGTAGGGCTGTGTTTCGTGGTTCGTGAACTTCGCGATTGGAGGACAGTT TCGCTGAGCGGCGCGGCGGGTTTGATGTAAACAACAAGTAGAAATCGAGA GTTGAAATGTAGACTCGGAAGCTGAAGGTTGAAGTGGTGTGTGTGTGGAT TTTCGTTGCGTATGCTTTGCTTCGTGACACGGATTTTGCGTGTGATATGC ATACACGTGTGATGTGTCCTTGTAGAAAAAGGAATGGTCATAGCAACGAC AGTGTAGTTGACTCGCGAAATTCTTGGCGCGTTTCTCCGCCATCATCGTT GTTCTTGTCTTTTTTTTGCCAAACATGTGATGGTTAGTTAACTCGCTCTG GCTTCACAGAGGCGCGACTGCGCCGTGAACACGGTCGGGTTAAGTTAATA TGTATAATAGTTATCAGGAAACGATCGCCGGTGGGATCATGATGGAAATA CTAGGTATAAAGCATTGGAAAGTGTTCCGAAATGACGATCGTCTCTCCCC GTGTATTTATTTGGTTCGCCACTGGTATTGCTGGTAGCATAACCACCGCT ATCCCCCATGCAGTCCCTGGTTTGGTCGCTCGTATCGTGTGTGTATTTTC TGTGTATTAATGCACACTGACTGTTAAGTCGCTGCGCAACGTCCATCCCT GAAGGGGTCATGTTTTTGAAGGCACTCATGTAGAGCGTTGAACAGGTCTT TCTTGCTGGAATTATCGTTACCTTGTTCACGCTGCGGGTATTAATTTAGT GATGTCAGTATTTGCTCTCGCTGGCGGGGTGGGGGGTGTGGTTGACGGCA GATATGCAAGTGGAACTTGCTAAAGTTTGCGGAGGCGTTGGACCCTGCTC TTCCACTGGAGGATTCTGCTGCTGCGCTTGAAAAGTATGACGATATGTAC AAGAGCTACTACGACGAGGGGATGCGAAGGTACGGTTGTTGTGCGATTGA CCAAGGTGGAGAACGACCTAAGTTGAATTGGATAACGACTGATGGTGATG ACGTGTGGGCCAGGTATAGAACAAAGACCCAACGTCAAAAACGACCAATA TGGATAGATCGTGTTTGAAGTATCTATCCCCTGGTTTCGTAGCCTCGGTG CGTTTTGAACACGCTGTGTGTACTACTGGGGATCGTTCTATTGTGCAATC GTACAACGGTGCACTCGTGCCTGCTGTCGTCATTATTTTGTTTTTTTCGC TAATCGATCCACATGGAGTACAGTGTCCCACTTTCCTTTTGTTGAAGGGG TTTGAAAGAAGCACATAGTATTATTATACCGTTATCACTCGTTTATGTTT GTATGTATTTTTTATACTAGGAGCATATTCCGTGCTGTGAAGTTACTGCA GCCAAGTCTCTACTTTTTTTTTTTTTTTGTAAGAAGGACTGTTGACATGA CTCTCTGACGTAGGACATACACAGTACCGGTTAGATCTGCAGCAGTGCCA CATGGTAGTATCAAGGGCACGACGTGTTTACCCCCCCTCTCCGGCCAGAC TTGTTCTTCACCGCTGCTCTCGAAGTTTTTCCGTTGCCGCCTATAGATAT GGCCTGTTCTATATATATATTTTTTAATTATTATTATTCTTTTTTTTCCC TCCTCAACTATTGATGTAAGTCGGCTAACAAGTGCAAGTGTATACAAGTG AATCTTGAAATGAGCTTCACAACGTCAACATGGATACAGAGTTATGATGT AAGGTTCAGAGGTATAGTTTTGACTGACTGTGCTGGGCATGGTCAATTTA CTAAAGTGAAAATTTCAGTTAATTCAAGTCAGCTGCATGCATATAACGTC CCCCCATTATTTTTTTTTCTTACTTGAATTATGTTTCGAAGTTTCATAAC AAAGTTTTTTTTTTTTTTCCCTACATTTTTGATCCTCACACGTTTTTTTT TCTTTCGATTTCTTATTCAGATGGAATCTCAGAATATTTTTTGGAAAATG TTAAGAATGGCGCTGAAATCACGTTGCCGTTTACTGTCCTGCTGTGTATT GTCGTTATTATTACTCAATAGGAAACTTGGGCTGTTTTCGAGGGAAGAGG CTGACGATGGGCTCTTTGAGTCTCTGTTCGCCACCATGGCGGACACATCG GCTGACTTCACAGGCGTCTTCAGGGAGCTGGCGGAGGTAAAGAATCCTTG CTGAATATTCCCGCAATTTTTTTTTTTTTTTTGGGGGGGGGGACGAATAA ATGCGAATACTCGAACGAAAAGTTCTAAAATGTTCGTGTGAGGTTCAGCA TGTGCGGAAGGACACACATGAGTCCTGAAACAATAGAGGGAGGGGGTATG GTATAACTTTCTCCAAATGGAGGAAACACGATATTTGTCCTCTCCCTAGG CAGTAATCGTGTTCTTTTTCCTCGTTTAACGTTTTGGTACCATCTAGTAG CAGCGTATTCTGAGATAAGAAGTAGTCAACTCTTGGTTTAGGGGGGGTGG TATCTAACGATCGGTCCTTTTTCCCTCTCAACCATGTCATTAGCGTCGTG CTGTTTGCCTCGGAATTTTTCATGATTCTTTTTACATGCATGGATGTACT GGTCTTGTTCATGGACACTGTTTACGTGTTTGCTGGGTTTTTTTTTTGAG GGGGGGTTCGTGTTACTTGTGTGTGATTATTTTCGCCCCTTGCTTTTTTT CTTTTTCTTTTTTTTATGCTCTCTTTTTTTACTCTTTATTTCGCAATGCC GAATTTAGATGACGCCTGATGGAGACGTGGAGACAGTAGCCAAGGCATTG GTTGCGCAGTGCGCGGGGCCCAAGGTGAACAGAATGAGCCTAGATATATA CTCCGGAGTATATATATATATTTTTTTTTTTCATTTTTTTTTTTGAGTGT TTCGCACACTTGACGGCTGATACATGAAATTCATTGGTTGTTGCCCGGCC TGTTGGAACTTTTATTTTTCGCCCCCCTGTTTTCCTGATCTTGTGATCGG CTTTTGAGTTACGCTTGCACACGCCATTGATGTTCGTCAGCCCTGTTTTT CGTCAACCCCCGAAATTGCTCTGATTTTATGGATGCATATCTCGAGCTCT ATATTCAGCCATGATTGGTTGTCAGGTACTCTACCTCAGCATTATATGTG AAGAGATTATGCTAAAAGTCCCCCCCCCCCAAAAAAGATTGACCAGTCGG TGAGGAGTGGTGAAGATATGCATGTTATTAGAGAGGTATCTGTAGCAGCT ATTGCGGGCCCTTGTAGGCCACTCCACGTCGATATACGAACAGATGATGA CAATATGTGCAGGTTGGTTATATGGTTATATACTTCCTGGTTGGCACAGC ATTGTTCTTCACGATGCTACCTCTTTATTGAGTTACCCCCCCTCTACCCC CCCCCACCCTAATTCGATTAGCCATCGGGAATCGCTCTGATAGGGACAAA GCTCCGTCTTGCCGAGAACCCGTAGTCAACTTTGTAAAGCATGAGTACCT CTCTCCCCATAATCCAGTCCAATATTATTGTTGGGGATAAATTAACTTCA TCATCATTAGACGTGTATTATTTTCTCCTCTTTTCCATCTTTCCCTTCTC CTCTCCCTATTCCCCGTAAGTATGTATGGAAATGACGGAGTGTACCTCGA GTTTGATTGATGGTATATCGAGCTCTATTGGCATTTTTTTTTTTTTTTAA AGCCATAGTCACGTTTGCTACTATCGAAACCTGATTTTGAAATTTATGTT TCACATGCTGCAAGTTATGTTTTGTCTGTCTTATTGATCAAGATCTCCCT TTCAATTGACAGACTTTTGCTGTTGTTGTTGTTGCTCGCCGCCCTTTGTT TCCACAGATCAAAGCGAAGGTGCTGAGGAGGGCATTGGATATCGGACGCC CGACTATTCCGGCACATCAGCTACAGGGGTTGTGGGCCATGGCGCAAGAA AATCCGGAGGCTCTCGCGTTGCGATTTGGAGCCCCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16744:227..4465-

>mRNA_H-paniculata_contig16744.3803.1 ID=mRNA_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig16744:227..4465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAAGAGGTAGTCCGCAGCACGGCGGAGTTGGTTTCCAAGTGGCAGTG
CGTGGGATTCACGCACGGGGTGCTAAACACGGATAACATGAGCCTCCTCG
GGTTGACGATCGATTACGGACCGTACGGATTTATGGACTTCTTCGACCCG
CAGTTCGTGCCCAACGGCTCGGATTCAGGGGGGCGTTATTCGTACGACAA
GCAGCCCGAGTACGAAGAGGTAGTCCGCAGCACGGCGGAGTTGGTTTCCA
AGTGGCAGTGCGTGGGATTCACGCACGGGGTGCTAAACACGGATAACATG
AGCCTCCTCGGGTTGACGATCGATTACGGACCGTACGGATTTATGGACTT
CTTCGACCCGCAGTTCGTGCCCAACGGCTCGGATTCAGGGGGGCGTTATT
CGTACGACAAGCAGCCCGAGATATGCAAGTGGAACTTGCTAAAGTTTGCG
GAGGCGTTGGACCCTGCTCTTCCACTGGAGGATTCTGCTGCTGCGCTTGA
AAAGTATGACGATATGTACAAGAGCTACTACGACGAGGGGATGCGAAGAT
ATGCAAGTGGAACTTGCTAAAGTTTGCGGAGGCGTTGGACCCTGCTCTTC
CACTGGAGGATTCTGCTGCTGCGCTTGAAAAGTATGACGATATGTACAAG
AGCTACTACGACGAGGGGATGCGAAGGAAACTTGGGCTGTTTTCGAGGGA
AGAGGCTGACGATGGGCTCTTTGAGTCTCTGTTCGCCACCATGGCGGACA
CATCGGCTGACTTCACAGGCGTCTTCAGGGAGCTGGCGGAGGAAACTTGG
GCTGTTTTCGAGGGAAGAGGCTGACGATGGGCTCTTTGAGTCTCTGTTCG
CCACCATGGCGGACACATCGGCTGACTTCACAGGCGTCTTCAGGGAGCTG
GCGGAGATGACGCCTGATGGAGACGTGGAGACAGTAGCCAAGGCATTGGT
TGCGCAGTGCGCGGGGCCCAAGATGACGCCTGATGGAGACGTGGAGACAG
TAGCCAAGGCATTGGTTGCGCAGTGCGCGGGGCCCAAGATCAAAGCGAAG
GTGCTGAGGAGGGCATTGGATATCGGACGCCCGACTATTCCGGCACATCA
GCTACAGGGGTTGTGGGCCATGGCGCAAGAAAATCCGGAGGCTCTCGCGT
TGCGATTTGGAGCCCCGAAGATCAAAGCGAAGGTGCTGAGGAGGGCATTG
GATATCGGACGCCCGACTATTCCGGCACATCAGCTACAGGGGTTGTGGGC
CATGGCGCAAGAAAATCCGGAGGCTCTCGCGTTGCGATTTGGAGCCCCGA
AG
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