mRNA_H-paniculata_contig10581.380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.260e-46 Identity = 112/278 (40.29%), Postives = 156/278 (56.12%), Query Frame = 3 Query: 315 MPPPEFVLKPTPGTEEERLLHLKQVLLPAGSKSVGRSPETGIRNASVSRKHFEVVVEEEECKIRSVAKQNLSVLEIDGSPVGHEWMDFPIGARLELRTATQVSFKYVLEEFDLDTHGSSTPPSRETSNGASNGHRRPPVTERVSEDADDEEENMLHGMQCSFCMGIFVDPTEVDCKGRHLFCLECIKQILKS---RNDCPQCRMNISKQCKESIL--GSKSIYTTRHRVQPAGP-ETYQSQAIMFLKEMIKRAIEKRLCDYNDETEWRRRSGLEPLPP 1130 M P +VLKP K+VLLP G+K +GRS TGI++ VSRKH EV VE + CK+R AK S ++ID + V EW+ FP+G RLE +F Y LE + T S+T + + N A+ A D+ + + + C C +FVDP E+DCKG+HL+C CI ++K+ +N CP C +IS ++ IL G K + P G + YQSQA+ ++E+I+ IEKR+ Y+DETEWR+RSGLEPLPP Sbjct: 1 MTTPLYVLKPISSG-------YKEVLLPPGTKFIGRSVATGIQSQVVSRKHIEVAVEGDVCKVRYCAKFK-SEVKIDNALVKKEWVPFPVGGRLEFLENPVEAFPYRLERYS--TASSATAAAEASGNTAAV--------------ACDQHQEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQAGRKRGASGM----PVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 250
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI) HSP 1 Score: 103 bits (256), Expect = 7.760e-22 Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 3 Query: 801 CMGIFVDPTEVDCKGRHLFCLECIKQILKS---RNDCPQCRMNISKQCKESIL--GSKSIYTTRHRVQPAGP-ETYQSQAIMFLKEMIKRAIEKRLCDYNDETEWRRRSGLEPLPP 1130 C +FVDP E+DCKG+HL+C CI ++K+ +N CP C +IS ++ IL G K + P G + YQSQA+ ++E+I+ IEKR+ Y+DETEWR+RSGLEPLPP Sbjct: 2 CYDLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQAGRKRGASGM----PVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10581.380.1 >prot_H-paniculata_contig10581.380.1 ID=prot_H-paniculata_contig10581.380.1|Name=mRNA_H-paniculata_contig10581.380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=357bp MPPPEFVLKPTPGTEEERLLHLKQVLLPAGSKSVGRSPETGIRNASVSRKback to top mRNA from alignment at H-paniculata_contig10581:1869..7425- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10581.380.1 ID=mRNA_H-paniculata_contig10581.380.1|Name=mRNA_H-paniculata_contig10581.380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5557bp|location=Sequence derived from alignment at H-paniculata_contig10581:1869..7425- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10581:1869..7425- >mRNA_H-paniculata_contig10581.380.1 ID=mRNA_H-paniculata_contig10581.380.1|Name=mRNA_H-paniculata_contig10581.380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at H-paniculata_contig10581:1869..7425- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |