mRNA_H-paniculata_contig16720.3795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16720.3795.1
Unique NamemRNA_H-paniculata_contig16720.3795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 258 bits (659), Expect = 1.370e-78
Identity = 137/363 (37.74%), Postives = 216/363 (59.50%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVIAGRRENVDEI-KHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIG-FGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRN 1214
            +QS R WN T+DDF + +G ++  +  C+Y  RD G++  +  A+YVDDLV+A   + + E+ KH +S+RF M DLG L   LG+E++  R  G +T+ Q  +++ +L ++G  + + V TP +  +K++            +  +  YR +VG+LMY    TRPD+A AV   ++   +PC   +   K +  YL   P  G+ F  + +  G+ G+ DADWA D+E+R+ST+GY   +NGG ISW S+KQ+ V   STEAEY+A  EA +  V+L+  L  +G      +  ++EDN+ +I L K    H RTKHI +R+H +RE + DG + L+YV T D L D++TK ++ V+ Q LR+
Sbjct:   44 KQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 403          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 250 bits (638), Expect = 4.900e-76
Identity = 133/364 (36.54%), Postives = 217/364 (59.62%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVIAGRR-ENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMK-ISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRNL 1217
            +QS R WN+ LD+    IG  ++ +  C+Y   ++G     + A++VDD+++AG+  E + ++K +I++RF++KD+G L  +LG++V ++   G + I Q +Y   ++K+YG   C+ V TPV+   K +SA E ++        N  EY+  VGSL+Y S+ TRPDI +AV+  A+   N   E ++  K IF YL    + G+ +   +N   + GF DADWA DL +RKST+GY  ++NG A+SW S+KQ  V   + EAEYVA   A +  +++R+LL  +        T++EDN+SAI + K    H R+KHI +++H +R+ +    L + Y  TG  L D+ TKG+ + + ++LR L
Sbjct:   24 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG--DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQED--GKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSEL------FNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 248 bits (632), Expect = 2.490e-75
Identity = 142/361 (39.34%), Postives = 205/361 (56.79%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLV-IAGRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLR 1211
            +QS R WN     F + +G ++S +  C++    +  E   + AVYVDDL+ I    E++DE+K  + +R++MKDLG LS +LGI V +D+    I + Q  YI  +LK+YG  +   V TP +  +K+   +    P +P +     Y+ MVGSL+YA+  TRPDIA AV   ++   NP     +  K I  YL    +L + F    N   L GF DADWA DL++R STTG +  L+GGA+SW S+KQ  V   + EAEYVA  +A +   +LR LL  +G   +  T + EDN+ AI + K    H RTKHI +R+H IRE ++DG + L+Y  T     DILTK L+R + +  R
Sbjct:   11 KQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPST-----YQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD-LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM)

HSP 1 Score: 257 bits (656), Expect = 1.870e-74
Identity = 136/363 (37.47%), Postives = 214/363 (58.95%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVIAGRRENV-DEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIG-FGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRN 1214
            +QS R WN T+DDF + +G ++  +  C+Y  RD G++  +  A+YVDDLV+A   + + +  KH +S+RF M DLG L   LG+E++ D   G +T+ Q  +++ +L ++G  + + V TP +  +K++            +  +  YR  VG+LMY    TRPD+A AV   ++   +PC   +   K +  YL   P  G+ F  + +  G+ G+ DADWA D+E+R+ST+GY   +NGG ISW S+KQ+ V   STEAEY+A  EA +  V+L+  L  +G      +  ++EDN+ +I L K    H RTKHI +R+H +RE + DG + L+YV T D L D++TK ++ V+ Q LR+
Sbjct:  445 KQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 804          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 254 bits (649), Expect = 3.590e-74
Identity = 142/359 (39.55%), Postives = 203/359 (56.55%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVI-AGRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQR 1205
            +Q+ R W   L   F  +G  R  +   ++   D G    ++ AVYVDDL+I +   E V ++K ++  +F M DLG    +LG+E+ RDRP  T++ISQ +Y  E+L+R+G  +C+  PTP+E  + +      +  S+        Y+  VGSLMY   GT PD+A++V   ++    P +E     K +  Y+    DLG+ F G  N   +E F+DADWA+D  NR S TGYV  L G  ISW S+KQ      STEAEY+AA  A K  ++LR  +  +GF     T L+ DN+SAI L K S  H RTKHI VR+H IRE + D  + L Y+ T D++ D LTKGLS+V+  +
Sbjct:  355 KQASREWYKKLCTEFESMGFRRCNSNHAVFIKDDNG--IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEVDSQ-------HYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVKLDK 703          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 259 bits (663), Expect = 1.770e-73
Identity = 140/362 (38.67%), Postives = 209/362 (57.73%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVIA-GRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGC-RGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLR 1211
            +QS R WN T+D+F   IG  +     C+Y  R++     +   +YVDDL++A   ++ +   K  +S+RF M DLG L   LG+EV+RD   G +++ Q  +++ VL ++G  +C+ V TP +  +K++           ++     YR  VG+LMY   GTRPD+A +V   ++   +PC   +   K +  YL   P  GI F G S+G  L G+ DADWA D+E R+ST+GYV  LNGG ISW S+KQ+ V   STEAEY+A  EA +  V+L+  +  +G     G+ T+FEDN+ AI L K    H RTKHI +R+H +RE + DG + L+Y  T + L D++TK L+  +   LR
Sbjct: 1017 KQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDS--ATMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSGNGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADLMTKPLAAAQFDALR 1375          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 258 bits (658), Expect = 7.580e-73
Identity = 143/364 (39.29%), Postives = 215/364 (59.07%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSR---DEGRETNLLAAVYVDDLV-IAGRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLR 1211
            +QS R WN+TLD F    G ++    SCLY        G+   ++ +++VDD++  +     ++E K  I  +F+++DLG +S +LG+ ++RDR   T+TISQ  Y+  VLKR+   EC+ V TP+E   +       ++P+     N  EY+ ++G L Y +T TRPD+A AV   ++ M  P QE +   K I  Y+    + GITF  K     L G+ DADWA D E R+ST+GY+ +++G  ISWCS+KQ  V+  STEAEY+A   A +  ++LR LL +IG   + ST + EDN++AI L +    H RTKHI V +H +RE ++D  + + Y +T + L DILTKGL R   ++LR
Sbjct:  986 KQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-----NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 245 bits (626), Expect = 2.360e-72
Identity = 138/366 (37.70%), Postives = 211/366 (57.65%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVIAGRRENVDEIKH---NISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRNLL 1220
            +Q+GR W   L   F+ +G  RS     ++F      E  ++A V VDDL IA    +VDE+ H    +  +F M DLG +  +LG+E++RDR   TI++ Q +YI  +L R+   + + + T ++    ++  +S   P +     +  YR  +GSLMYA+ GTRPD++YAV   ++ M+NP    +   K +  YL    +  +T+GG  N +G+EGF DADW    ++R+S +GYV  ++GGA+SW S+KQ +V   STEAEYVA   A K  ++ R  LG I       TTL+ DN+SAI L K +  H RTKHI +R+H IR+ +  G + + Y  T D   D+LTK L+R + +++R L+
Sbjct:  183 KQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVA-VSVDDLAIAAN--SVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGD-NANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL)

HSP 1 Score: 241 bits (615), Expect = 2.630e-72
Identity = 133/365 (36.44%), Postives = 205/365 (56.16%), Query Frame = 3
Query:  135 QSGRNWNNTLDDFFVGIGLERSITYSCLYFSRDEGRETNLLAAVYVDDLVI-AGRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPV--EGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRNLL 1220
            QSGR+WN   D     +GL ++   +C+Y+   +G +  +   V+VDDL+I A  ++  + ++  +   F MKD+G   +++GIEV RDR  GT+T+SQ  YI  +L RYGF     V TP+  +   K+        P+ P      EY+ M+G LMYA+  TRPDIAYAV + ++   NP  E  + CK +F YLS   + G+ +G + +G   EG+ DAD+A +L++RKS +GY   L G A +W S+KQ  V   +TEAE+ +  +A +  ++ R L   IG+    +T L+ DN+SA+ L +    H ++KH  V    +RE +  GI+   Y  T ++L DI TK L+  R   L  +L
Sbjct:   43 QSGRDWNREFDRKVQSVGLTKTAADNCVYYRERDGEQ--VWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSV--RAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGYAYMLAGAAFAWSSKKQTTVATSTTEAEFTSLAQAARFAMWCRNLFAGIGYSQDDATVLYGDNQSALKLTRNPEYHAQSKHFDVSNMFVREKVALGIIDTVYCPTDEQLADIFTKALAEPRHLELTRML 403          
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 256 bits (653), Expect = 3.440e-72
Identity = 137/367 (37.33%), Postives = 214/367 (58.31%), Query Frame = 3
Query:  132 QQSGRNWNNTLDDFFVGIGLERSITYSCLYFS---RDEGRETNLLAAVYVDDLV-IAGRRENVDEIKHNISQRFRMKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTPVEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDADWAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGKGTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWHRIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRNLL 1220
            +Q+ R WN+ +D F +  G  +S    C+Y     R  G+   ++ A+YVDD++  +   E + + K  +++RF+++D+G +S VLG+ V+R+R   T+TI+Q  Y+  VLKR+G  EC+ V TP+E   K  +    D P + +     EY+  +G L YA+  TRPD+A AV   ++ M  P ++ +   K +  Y+      G+TF    N   L G+ DADW  D+E R+ST+GYV ++    ISWCS++Q  V+  +TEAEY+A   A +  V+LR LL  IG      +T+FEDN+ AI L K    H RTKHI V +H IRE +   I+ +KY +T + L D++TK L +V  +R R+++
Sbjct:  967 KQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVR-----EYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16720.3795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB98_PHYRM1.370e-7837.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT4.900e-7636.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE2.490e-7539.34POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
H3H8W9_PHYRM1.870e-7437.47Integrase catalytic domain-containing protein n=3 ... [more]
A0A0C9VSW1_SPHS43.590e-7439.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1FHK1_PYTOL1.770e-7338.67Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
A0A7D9IUY0_PARCT7.580e-7339.29Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4Y9ZVS1_9AGAM2.360e-7237.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H7K8_MYCCL2.630e-7236.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT3.440e-7237.33Retrovirus-related Pol poly from transposon TNT 1-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16720contigH-paniculata_contig16720:887..2172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score208.0
Seed ortholog evalue6e-51
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1226
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16720.3795.1prot_H-paniculata_contig16720.3795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16720 1231..2172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.6035604-UTR-H-paniculata_contig16720:886..12301622929325.6035604-UTR-H-paniculata_contig16720:886..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16720 887..1230 +
1691480816.7043617-UTR-H-paniculata_contig16720:886..12301691480816.7043617-UTR-H-paniculata_contig16720:886..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16720 887..1230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.6161926-CDS-H-paniculata_contig16720:1230..14391622929325.6161926-CDS-H-paniculata_contig16720:1230..1439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16720 1231..1439 +
1691480816.716413-CDS-H-paniculata_contig16720:1230..14391691480816.716413-CDS-H-paniculata_contig16720:1230..1439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16720 1231..1439 +
1622929325.6284227-CDS-H-paniculata_contig16720:1499..21721622929325.6284227-CDS-H-paniculata_contig16720:1499..2172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16720 1500..2172 +
1691480816.7277262-CDS-H-paniculata_contig16720:1499..21721691480816.7277262-CDS-H-paniculata_contig16720:1499..2172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16720 1500..2172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16720.3795.1

>prot_H-paniculata_contig16720.3795.1 ID=prot_H-paniculata_contig16720.3795.1|Name=mRNA_H-paniculata_contig16720.3795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
MKDLGSLSRVLGIEVRRDRPYGTITISQGSYIREVLKRYGFYECRRVPTP
VEGKMKISAPESTDKPSEPKSGNSTEYRGMVGSLMYASTGTRPDIAYAVH
QAARRMENPCQEDFSTCKLIFLYLSTVPDLGITFGGKSNGHGLEGFVDAD
WAEDLENRKSTTGYVIKLNGGAISWCSRKQQLVTWCSTEAEYVAAGEAGK
GTVYLRELLGSIGFGCRGSTTLFEDNKSAINLGKGSGAHCRTKHIGVRWH
RIREWIRDGILALKYVQTGDELVDILTKGLSRVRCQRLRNLLM*
back to top

mRNA from alignment at H-paniculata_contig16720:887..2172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16720.3795.1 ID=mRNA_H-paniculata_contig16720.3795.1|Name=mRNA_H-paniculata_contig16720.3795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1286bp|location=Sequence derived from alignment at H-paniculata_contig16720:887..2172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTT TGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCGTTTG TGCGCCGCCTTCGTAAGAGCCTGTACGGCCTCAGCAGAGCGGTCGAAACT GGAACAACACTCTAGACGATTTTTTTGTTGGGATAGGACTCGAACGTTCC ATTACCTACTCGTGCCTGTACTTTTCTCGCGACGAAGGGAGAGAGACAAA CCTTCTGGCGGCCGTCTATGTTGACGACCTGGTCATTGCTGGTCGTCGTG AGAACGTAGACGAAATCAAGCATAACATAAGTCAGCGTTTTAGGATGAAA GACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCG CCCTTATGGTACCATAACCATCTCGCAAGGTAGCTATATCCGCGAGGTAC TAAAACGATACGGTTTTTACGAGTGTCGAAGAGTACCCACCCCTGTAGAA GGAAAAATGAAGATTTCGGCACCCGAGTCGACCGACAAGCCCTCCGAACC GAAGTCACAGGGAGCTGTACTGTCGGACATAGGCAAAGGAGTACAAGAAA GCAGCAGGGGGAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGA TCACTCATGTATGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGT ACACCAAGCAGCACGTCGTATGGAGAACCCATGTCAAGAAGACTTCAGTA CATGCAAGCTCATTTTTCTTTATCTCAGTACTGTGCCCGACCTCGGCATT ACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTTGTTGATGC CGATTGGGCGGAAGATCTCGAGAACCGAAAGTCCACAACAGGATACGTTA TCAAACTGAACGGCGGTGCAATAAGTTGGTGCTCAAGGAAGCAACAGTTA GTCACATGGTGCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGG AAAGGGAACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGAT GCAGGGGGAGCACGACATTGTTTGAGGACAACAAATCAGCTATTAATCTC GGTAAAGGATCTGGCGCACACTGCAGGACAAAACACATCGGAGTGCGCTG GCATCGAATTCGAGAGTGGATTCGAGACGGAATATTGGCATTGAAATACG TGCAGACCGGCGATGAACTTGTTGACATTTTAACGAAAGGGCTAAGCAGA GTAAGGTGTCAGAGACTGAGAAATTTACTCATGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16720:887..2172+

>mRNA_H-paniculata_contig16720.3795.1 ID=mRNA_H-paniculata_contig16720.3795.1|Name=mRNA_H-paniculata_contig16720.3795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig16720:887..2172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACG
TGACCGCCCTTATGGTACCATAACCATCTCGCAAGGTAGCTATATCCGCG
AGGTACTAAAACGATACGGTTTTTACGAGTGTCGAAGAGTACCCACCCCT
GTAGAAGGAAAAATGAAGATTTCGGCACCCGAGTCGACCGACAAGCCCTC
CGAACCGAAATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGA
AGTACGACGTGACCGCCCTTATGGTACCATAACCATCTCGCAAGGTAGCT
ATATCCGCGAGGTACTAAAACGATACGGTTTTTACGAGTGTCGAAGAGTA
CCCACCCCTGTAGAAGGAAAAATGAAGATTTCGGCACCCGAGTCGACCGA
CAAGCCCTCCGAACCGAAAAGTGGCAATTCGACTGAATACAGAGGCATGG
TAGGATCACTCATGTATGCCTCGACAGGAACTAGACCTGATATAGCATAC
GCGGTACACCAAGCAGCACGTCGTATGGAGAACCCATGTCAAGAAGACTT
CAGTACATGCAAGCTCATTTTTCTTTATCTCAGTACTGTGCCCGACCTCG
GCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTTGTT
GATGCCGATTGGGCGGAAGATCTCGAGAACCGAAAGTCCACAACAGGATA
CGTTATCAAACTGAACGGCGGTGCAATAAGTTGGTGCTCAAGGAAGCAAC
AGTTAGTCACATGGTGCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAA
GCGGGAAAGGGAACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTT
CGGATGCAGGGGGAGCACGACATTGTTTGAGGACAACAAATCAGCTATTA
ATCTCGGTAAAGGATCTGGCGCACACTGCAGGACAAAACACATCGGAGTG
CGCTGGCATCGAATTCGAGAGTGGATTCGAGACGGAATATTGGCATTGAA
ATACGTGCAGACCGGCGATGAACTTGTTGACATTTTAACGAAAGGGCTAA
GCAGAGTAAGGTGTCAGAGACTGAGAAATTTACTCATGTGAAAGTGGCAA
TTCGACTGAATACAGAGGCATGGTAGGATCACTCATGTATGCCTCGACAG
GAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATG
GAGAACCCATGTCAAGAAGACTTCAGTACATGCAAGCTCATTTTTCTTTA
TCTCAGTACTGTGCCCGACCTCGGCATTACGTTCGGCGGTAAGAGTAATG
GTCACGGTCTGGAAGGATTTGTTGATGCCGATTGGGCGGAAGATCTCGAG
AACCGAAAGTCCACAACAGGATACGTTATCAAACTGAACGGCGGTGCAAT
AAGTTGGTGCTCAAGGAAGCAACAGTTAGTCACATGGTGCAGTACAGAGG
CAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGGAACGGTATATCTTAGG
GAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTT
TGAGGACAACAAATCAGCTATTAATCTCGGTAAAGGATCTGGCGCACACT
GCAGGACAAAACACATCGGAGTGCGCTGGCATCGAATTCGAGAGTGGATT
CGAGACGGAATATTGGCATTGAAATACGTGCAGACCGGCGATGAACTTGT
TGACATTTTAACGAAAGGGCTAAGCAGAGTAAGGTGTCAGAGACTGAGAA
ATTTACTCATGTGA
back to top