mRNA_H-paniculata_contig16710.3792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16710.3792.1
Unique NamemRNA_H-paniculata_contig16710.3792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16710.3792.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.040e-69
Identity = 193/340 (56.76%), Postives = 207/340 (60.88%), Query Frame = 1 
Query:   31 LRSLVVDHLASNDLLQSLAVFLPESGLGNAVASAAAPNTPACNIDNSQRPTATVAGAGVGRHMAA-AALCREDVLQGLPIAAESALFRRVISRA--GGGXXXXXXPPQKGEGVAAAGEAEGC------------------------------------RRVFGLLEALVAEVAARSCAVAVDSNTQTDELGRSHKENLDSRLGEVRENWLRRSADERLAPARDVTERMLAYQRECESRAAAQAS--------VKVEVESFRQRDLTALRLQMAANHRREVDSMRKELQQAQYDGRVSRLEEVERERDRRHTERLREXXXXXXXXXQQLLREMDLLRTREQ 909
            L SLVVDHLASN LLQSLAVFLPESGLG              N  N    TATV G G G   AA AAL REDVLQ LPI A+S LFRRVI RA  G G          GE  A  G A G                                     +RV GLLEALV EVA RS AVAVDSNTQTDE GRSHKENL +RL  VRE WLRRSADER  PA+DVTERMLAYQRECESRAAAQAS        +K E +SFR+RDL ALR+QMA+  RREVD+MRKELQ +QYD RV RL+E ER+R+         XXXXXXXXX      MDLLRTREQ
Sbjct:  118 LHSLVVDHLASNGLLQSLAVFLPESGLGGG-----------SNCGN----TATV-GTGPGAAPAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVAVXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQ-SQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQ 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16710.3792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY8_ECTSI3.040e-6956.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16710contigH-paniculata_contig16710:983..5767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog38833.XP_003061165.1
Preferred nameOFD1
KEGG koko:K16480
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Basal body protein
EggNOG OGs2CMKU@1,2QQR5@2759,34MIN@3041,37XP6@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size924
Cds size924
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16710.3792.1prot_H-paniculata_contig16710.3792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16710 983..5767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.0981264-CDS-H-paniculata_contig16710:982..11531622929325.0981264-CDS-H-paniculata_contig16710:982..1153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 983..1153 -
1691480816.470086-CDS-H-paniculata_contig16710:982..11531691480816.470086-CDS-H-paniculata_contig16710:982..1153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 983..1153 -
1622929325.1165247-CDS-H-paniculata_contig16710:1821..19291622929325.1165247-CDS-H-paniculata_contig16710:1821..1929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 1822..1929 -
1691480816.482069-CDS-H-paniculata_contig16710:1821..19291691480816.482069-CDS-H-paniculata_contig16710:1821..1929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 1822..1929 -
1622929325.129368-CDS-H-paniculata_contig16710:2314..24511622929325.129368-CDS-H-paniculata_contig16710:2314..2451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 2315..2451 -
1691480816.4932144-CDS-H-paniculata_contig16710:2314..24511691480816.4932144-CDS-H-paniculata_contig16710:2314..2451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 2315..2451 -
1622929325.1436992-CDS-H-paniculata_contig16710:5259..57671622929325.1436992-CDS-H-paniculata_contig16710:5259..5767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 5260..5767 -
1691480816.5114176-CDS-H-paniculata_contig16710:5259..57671691480816.5114176-CDS-H-paniculata_contig16710:5259..5767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16710 5260..5767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16710.3792.1

>prot_H-paniculata_contig16710.3792.1 ID=prot_H-paniculata_contig16710.3792.1|Name=mRNA_H-paniculata_contig16710.3792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
PPRASTRSPSLRSLVVDHLASNDLLQSLAVFLPESGLGNAVASAAAPNTP
ACNIDNSQRPTATVAGAGVGRHMAAAALCREDVLQGLPIAAESALFRRVI
SRAGGGSGSGSGPPQKGEGVAAAGEAEGCRRVFGLLEALVAEVAARSCAV
AVDSNTQTDELGRSHKENLDSRLGEVRENWLRRSADERLAPARDVTERML
AYQRECESRAAAQASVKVEVESFRQRDLTALRLQMAANHRREVDSMRKEL
QQAQYDGRVSRLEEVERERDRRHTERLRELEGAQFEARQQLLREMDLLRT
REQVGVP*
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mRNA from alignment at H-paniculata_contig16710:983..5767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16710.3792.1 ID=mRNA_H-paniculata_contig16710.3792.1|Name=mRNA_H-paniculata_contig16710.3792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4785bp|location=Sequence derived from alignment at H-paniculata_contig16710:983..5767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCGCGTGCGTCAACCCGGTCCCCATCCTTGCGCAGTCTCGTCGTCGA
TCATCTTGCGAGCAACGACCTGCTTCAATCACTCGCGGTTTTCCTACCGG
AATCGGGTCTGGGCAATGCCGTCGCCTCCGCTGCTGCCCCCAATACACCA
GCTTGCAACATTGACAATAGCCAACGTCCAACAGCGACTGTGGCTGGAGC
CGGAGTTGGCCGACACATGGCGGCGGCCGCACTGTGCCGAGAGGACGTGT
TGCAAGGGCTACCGATAGCTGCAGAGTCCGCACTGTTCCGACGGGTAATC
AGCAGGGCGGGCGGCGGCAGCGGCAGTGGCAGTGGTCCGCCACAGAAGGG
GGAGGGGGTGGCTGCGGCGGGAGAGGCGGAGGGGTGCCGTCGGGTTTTCG
GATTGTTGGAGGCGTTGGTGGCCGAGGTGGCGGCGAGGTCTTGTGCCGTC
GCTGTTGATTCGAACACGCAGACGGATGAGCTGGGGCGCAGTCACAAGGA
AAACCTCGGTGAGGGATAGTAGTGTCCCTCTGCTTTGTTGTATTTGTAGC
TTGTTTTTTGTAAGGGAGCCGGCATGGGAGCGGATGGGCGGGGGTGTAAG
CAAAGACTTGGAGAGAGAAAGAGGCGGGGGGGGGGGGGGAACGCGAGGTA
AACCAAGGTCAAGTTTTTACCTGATCGCCTTGTACGCTGACTTCGCAAGA
GACTAAACGGTCGACAACTTAAACAGAAATCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCCCCTCTCTCTCTCCTATGTATGTAGGGGTAAAGTCG
GGTATTAAGGTACAGCATACCTTATCCCCGATATCATCACGCCAAAACAT
TTTTTCGAAACCCGGTTCGATATTTTGAAGTCCGACAGTTCTGGGGCGTC
ACTTGAGCGCTCTAACCCACGAATTGGTCATAATTTGCTTGAGATCGAGC
ACATCGAGAACCTTGGAAGTGTGTATGGTCACCTTTTTACCCATGCCGCG
CAAGCGTGTGGACGAGGAAATAGCGAAACGGGCCGTTGAGACGGTCAACA
GGAAAGAAGAGATCATCAGGAGTGCCGCTCTCAAATTTCAAGTCAATCTG
ACTTCAACAGCGAACAGGATGACCGGCAGAGTAGCGATGGCCGCCAGACC
TGGTTCGCCCACGGTTCTGACCGCGGTGGAGGAGACCGCCATCGAAGACC
TGTTGGTTTACGCTGGTAGGCACTGCCTCGGCATCACTAGGCCCCAGCTT
ATTGAAAACGTTCGCCAGCTGTGCAACGACGGCCGTAATGTGCCTTGGGA
CCCCCTTAAGGGGTCTGGTAAGGCCTGGTTCGCGGCGTTCTTCAAGCGAC
ACCCAAGGCTAGCGCTACACAGCTCCCGCATCTACGAAGCGAACCGCGTG
TCTACGGACGATCGCTATCGCCTGGAAACATTGTACGATGGATGGCAGGA
GCTCTTCGACGAAGCGTAACCTGCACCAACACACATCTGGGACAATTATG
AAACAGGTGAGGTGCGTACGCACAATGTGACATGTCTGTTTCGTTTGGGC
GCGAGAGTGTCGTCCGTTTGTCGTCGCTGCTGTTTTTGCTGTGAAGAGCG
ACCGGATGCTGTGCGCGCCGCTACAACTGCTGTTTGCAATTTTGACTGCT
GTTTCGAGCTGTGTGTACTGCTGTTGACGCACGTTCCTGTGCTGCTGTGT
ACGCTTCGTGTTGTCAGGCCTTAACCCGCAAGGGTTTAAGTCTCATAAGG
TCATCGCCAGAAGGGTCAGAAAACGATTGGTGTGAAGCGCTCAAACTCTT
CGGAGAATGTGACGGTTGTGGCAACGATCAACGCAGCCGGCGCCAAGATG
CCTCCGTTGTTCATCTACAAGAGACAGCGGGTGCAGGCGGCCTGGGTCTG
TAACCGCGCCCCCCCCGGTTCGGGGTACGCCGTGACTGACTTCTCGTTCA
TGCAAGGGCCGGTCTGCCTCAGCTTTATGAAGAAATTCAAGGAGTTAATT
GACAACAGCGGTCTGAACGACGGCAAGCCCCGCGTCTTTGTCCTCGACGG
GCACGCTTCGCATGTTACCATCGACGTGTTGAAACAGCCTGGGCCGCCAC
GCCGAGATCAACCTCCTTGCGAACGGCCACTCCATCACCGGCCTGCGCGT
GAACACGGTGTTCTTTGGTGCGTACCTCCAGGGCAGTCTCCTCACGACCG
ACAAGATTTTGGCGGAGTACGAGGAAGCGGAGAAAAAAACAGAAAGAGGA
AGAGGAAGCGAAGGCGGCGCGGATGGCGGCGAGAGAGACCAAACGTGTCG
AGAAGGAAGCGGCGCAGGCGACCAAATGGCAGCGAAAGCAGAGCAGTGGC
CGAGGGAGTGGGCGAAGTGACCAGATGCGCGGCCGCGGGGGGGCGCGCAG
CGGCCTGGGACGCGGCCGCGGCAGAGGGGGTGGACGCGGCGGGGGTGGTG
GTAGTTTGGCGATGGGAATAGGCGGGTCAGGGTCAGGGTCAGGCTAAATG
AACTGGATCCTCTTGGGCTGGGATGGTTGCTGCACAGGGGGGCTGGAGAT
TAGGGCTGACTGTGGCGTTCTTTAAGTGCGGTCTTGTCAATTGAAGAACC
GATTTGTTAGGGGAGGAATAACTCGTGAGAAAGTATCTGGGTTTCATTAC
CTTTCCGCCTCCCGCGAGCGGGGCGGGAATGGGAGGGGCGAGAAGCGCTT
AGCAAAACAGGAGATTTTGGGGCCGAAATCTGGGGGTACGCTACATATCG
ATTCAAGAGCAAAGAGTGACTAATTCAACTTCGATTCAACTGAAACTTTG
TAAGATGCTTCCCTGAAATACAAAAAATCGATTTTGAAAAAAAAAAATGC
ACATATTCTCGGAAGATCCAACCGCGCGAAATTGACAAGCCGCTGCCGGC
GCCCGCCATACCCCGGGGATTCCGTCATATTTTCCCCGCATCTACGTGTA
TGGTCATGAAAGCTCATGGACACTTGATAGATATCATAAGGATAATGTGT
ACCAAGTTTCAAGTCTTGGATCACTCTGAGTCACGAGCAATAGGCTATTT
AGCGTTTGTTCCTTATTACCCTACTCTGAATTTTCGGCGGTTTCCTCCCT
GGAGTCACCAACTTTTCAACACTACTAATTCAACTATAATGGACCTCCTT
TTTTTTTTTTTCTGACTGTAGATACTATATACCACAAGGAGCACTGTAAC
AACTATTTTTATCATAACTCGCTTTGGTTTATTCATGTTTTAGAGCAGAT
TTGGTGATACCGTCCTTAGATGTACCTTAATACCCGACTTTACCTCTATA
CGTACATGTGAAACAGATAGCCGTCTCGGGGAGGTGCGCGAGAACTGGCT
GCGTCGTTCGGCGGACGAGAGGCTGGCGCCGGCCAGAGACGTAACGGAGC
GTATGCTTGCCTACCAGCGGGAGTGCGAGTCTAGAGCTGCGGCGCAGGCG
AGTGTTGTTATTGTTGACGTTGATGGTGATGTTGACGGTGATAATACTGG
AGTACAAACCCCGCTCCAAATACGTACTCCCCCAAGACTTCGGGTTTACG
AGAAAGTCAACAATCCATCCGGACGCGCCGTTTTGCTTTACATTATTTTG
TCCTTGAAGGCTGGAAGATATTACCCCCCCCCCCACCAACACTAAGACTT
GGGAGGAAAAAGACCAGGGTAACGATCCACCCGGGAGTACCATTTGTCTT
CTAATTTTTCCCGAATGACGACTGCGATGATGATGATGATGATCGCGGTG
TTTTCTTCGGCCGATCATTTTCCAATCTTCAATATTTCGCGCAGGTTAGT
AGTCTCCACGTTGTTGACAATACATTTTTTTGGGGCAGGTGAAAGTCGAG
GTGGAGTCTTTTCGACAGCGCGATCTGACGGCGCTACGGTTACAGATGGC
AGCCAATCATCGACGAGAAGTGGACTCCATGAGGAAGGAGCTTCAAGTGA
GAGAGAGAGAGAGAGAGAGAGAGAAGCTTTCAACTGTTTTCGCTTACAGG
AGACATCCTTGTTTTAAAAATTCACCCCCCGGACAAATACGAATATTTTG
GCATATTCGCCACGACAATCGAAATAGATTCGCCTCAATTTCAAAAGGAG
GGAACAAGTAGAATAAAGTACCCACCCCTGTCCATTCGATTTACGAGTAT
GATCAGGAGTCGTGGATGGTCCGGGACACATGGAGAACATGAGCATTCTG
AAACTCAGGCGAATATTTTTTCATTTTCGTGCCGAGTACGCCAATTATTC
GTAATTGTCCGGGGGGTGAAAATGTTACATTGAGAGAGAGAGAGAGAGAG
AGAGCTGTCACTTGTTATGGGCAACAGGAGAGATCTTTGTTTACAAAATT
ACCTCCAGTATAGAAGTTTAATCTAGCTATTCAAGTTGGTACCATGTGTT
TGGCTGCCAATGTCTAGCCACCAAAATCCGTCCCTTTGCACCTGAAGTGC
ACTGACCAGTCGACAAGAGCAAAATTAAGCATCATGTCGACAAGCTCTTC
ATTGTTCACGACCGGTAAGTCGTTAGCTGTCGCTACTACTGAAAGTACGG
TACCTGAAGGGGTTCTAACTCCAACAATTCTGCTGTTTCGGGAAAAAACA
AACAAACGAGCGAGCAGGCGCAGTACGACGGGCGCGTGAGTCGCCTGGAG
GAGGTGGAGAGGGAGAGAGACAGGCGGCACACGGAGCGTTTGAGGGAGCT
GGAAGGCGCGCAATTTGAGGCTCGGCAGCAGCTCTTGAGAGAAATGGATC
TCTTGCGGACGCGAGAGCAGGTAGGTGTACCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16710:983..5767-

>mRNA_H-paniculata_contig16710.3792.1 ID=mRNA_H-paniculata_contig16710.3792.1|Name=mRNA_H-paniculata_contig16710.3792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig16710:983..5767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCGCGTGCGTCAACCCGGTCCCCATCCTTGCGCAGTCTCGTCGTCGA
TCATCTTGCGAGCAACGACCTGCTTCAATCACTCGCGGTTTTCCTACCGG
AATCGGGTCTGGGCAATGCCGTCGCCTCCGCTGCTGCCCCCAATACACCA
GCTTGCAACATTGACAATAGCCAACGTCCAACAGCGACTGTGGCTGGAGC
CGGAGTTGGCCGACACATGGCGGCGGCCGCACTGTGCCGAGAGGACGTGT
TGCAAGGGCTACCGATAGCTGCAGAGTCCGCACTGTTCCGACGGGTAATC
AGCAGGGCGGGCGGCGGCAGCGGCAGTGGCAGTGGTCCGCCACAGAAGGG
GGAGGGGGTGGCTGCGGCGGGAGAGGCGGAGGGGTGCCGTCGGGTTTTCG
GATTGTTGGAGGCGTTGGTGGCCGAGGTGGCGGCGAGGTCTTGTGCCGTC
GCTGTTGATTCGAACACGCAGACGGATGAGCTGGGGCGCAGTCACAAGGA
AAACCTCGCCTCCGCGTGCGTCAACCCGGTCCCCATCCTTGCGCAGTCTC
GTCGTCGATCATCTTGCGAGCAACGACCTGCTTCAATCACTCGCGGTTTT
CCTACCGGAATCGGGTCTGGGCAATGCCGTCGCCTCCGCTGCTGCCCCCA
ATACACCAGCTTGCAACATTGACAATAGCCAACGTCCAACAGCGACTGTG
GCTGGAGCCGGAGTTGGCCGACACATGGCGGCGGCCGCACTGTGCCGAGA
GGACGTGTTGCAAGGGCTACCGATAGCTGCAGAGTCCGCACTGTTCCGAC
GGGTAATCAGCAGGGCGGGCGGCGGCAGCGGCAGTGGCAGTGGTCCGCCA
CAGAAGGGGGAGGGGGTGGCTGCGGCGGGAGAGGCGGAGGGGTGCCGTCG
GGTTTTCGGATTGTTGGAGGCGTTGGTGGCCGAGGTGGCGGCGAGGTCTT
GTGCCGTCGCTGTTGATTCGAACACGCAGACGGATGAGCTGGGGCGCAGT
CACAAGGAAAACCTCGATAGCCGTCTCGGGGAGGTGCGCGAGAACTGGCT
GCGTCGTTCGGCGGACGAGAGGCTGGCGCCGGCCAGAGACGTAACGGAGC
GTATGCTTGCCTACCAGCGGGAGTGCGAGTCTAGAGCTGCGGCGCAGGCG
AGTATAGCCGTCTCGGGGAGGTGCGCGAGAACTGGCTGCGTCGTTCGGCG
GACGAGAGGCTGGCGCCGGCCAGAGACGTAACGGAGCGTATGCTTGCCTA
CCAGCGGGAGTGCGAGTCTAGAGCTGCGGCGCAGGCGAGTGTGAAAGTCG
AGGTGGAGTCTTTTCGACAGCGCGATCTGACGGCGCTACGGTTACAGATG
GCAGCCAATCATCGACGAGAAGTGGACTCCATGAGGAAGGAGCTTCAAGT
GAAAGTCGAGGTGGAGTCTTTTCGACAGCGCGATCTGACGGCGCTACGGT
TACAGATGGCAGCCAATCATCGACGAGAAGTGGACTCCATGAGGAAGGAG
CTTCAACAGGCGCAGTACGACGGGCGCGTGAGTCGCCTGGAGGAGGTGGA
GAGGGAGAGAGACAGGCGGCACACGGAGCGTTTGAGGGAGCTGGAAGGCG
CGCAATTTGAGGCTCGGCAGCAGCTCTTGAGAGAAATGGATCTCTTGCGG
ACGCGAGAGCAGGTAGGTGTACCGTAGCAGGCGCAGTACGACGGGCGCGT
GAGTCGCCTGGAGGAGGTGGAGAGGGAGAGAGACAGGCGGCACACGGAGC
GTTTGAGGGAGCTGGAAGGCGCGCAATTTGAGGCTCGGCAGCAGCTCTTG
AGAGAAATGGATCTCTTGCGGACGCGAGAGCAGGTAGGTGTACCGTAG
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