mRNA_H-paniculata_contig16709.3790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16709.3790.1
Unique NamemRNA_H-paniculata_contig16709.3790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.200e-33
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 FELGQLVPPGQSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGI--RYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            F+L Q +   Q +T++++V+QGTGSGA GF +LD R +GT ++ P D+  VGST IE WTG+  RYPDFV  GTGDQK I EAIC+VKKASFDGVDCVGGD
Sbjct:  769 FDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGD 869
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.660e-33
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 FELGQLVPPGQSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            FELG +  P   VT+V ++M+GTGSGA GF+L +ARF+GT ++ P+++  VGST +E W   RYPDFV  GTGDQKAI  AIC+VKKASFDGVDCVGGD
Sbjct:  763 FELGTIDDP---VTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGD 858
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.620e-32
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 FELGQLVPPGQSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            FELG +  P   VT++ +VM+GTGS A GF+L +ARF GT ++ P+D+  VGST + EW   RYPDFV  GTGDQKAI  AIC+VKKASFDGVDCVGGD
Sbjct:  578 FELGTIDDP---VTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGD 673
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.810e-25
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   31 QSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            Q VT + + M+GTGSGA GF +LDA  +GT ++ P+D+  VGST IE W G  YPDFVG+G+GDQ AI  AIC VKK ++DGV+CV  D
Sbjct:  789 QYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVD 877
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.160e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   31 QSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            Q VT + + M+GTGSGA GF +LD   +G  ++ P+D+  VGST IE W+G   PDFVG G+GDQ AI  AIC+VKK +FDGVDC+  D
Sbjct:  110 QYVTSIGIEMKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMD 198
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BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.530e-22
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   28 GQSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRTVGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD 297
            GQ VT + + ++G  SG   F L+DAR +GT ++ P D+  VGST I EW G   PDFVG GTGDQ AI  AIC+VKK ++DGVDCVG D
Sbjct:  618 GQYVTSIAVHVEG--SGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMD 705
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16709.3790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KL74_9PHAE1.200e-3362.38F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FTH1_ECTSI5.660e-3362.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE3.620e-3262.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA6_9PHAE3.810e-2557.30F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FUI8_ECTSI4.160e-2455.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZZ4_ECTSI3.530e-2255.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16709contigH-paniculata_contig16709:1946..3700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.914196-CDS-H-paniculata_contig16709:1945..20951622929324.914196-CDS-H-paniculata_contig16709:1945..2095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16709 1946..2095 +
1691480816.387094-CDS-H-paniculata_contig16709:1945..20951691480816.387094-CDS-H-paniculata_contig16709:1945..2095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16709 1946..2095 +
1622929324.9349678-CDS-H-paniculata_contig16709:3551..36981622929324.9349678-CDS-H-paniculata_contig16709:3551..3698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16709 3552..3698 +
1691480816.3980663-CDS-H-paniculata_contig16709:3551..36981691480816.3980663-CDS-H-paniculata_contig16709:3551..3698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16709 3552..3698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16709.3790.1prot_H-paniculata_contig16709.3790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16709 1946..3698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16709.3790.1

>prot_H-paniculata_contig16709.3790.1 ID=prot_H-paniculata_contig16709.3790.1|Name=mRNA_H-paniculata_contig16709.3790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
FELGQLVPPGQSVTDVDLVMQGTGSGADGFRLLDARFVGTPVEPPNDSRT
VGSTRIEEWTGIRYPDFVGAGTGDQKAIQEAICSVKKASFDGVDCVGGD
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mRNA from alignment at H-paniculata_contig16709:1946..3700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16709.3790.1 ID=mRNA_H-paniculata_contig16709.3790.1|Name=mRNA_H-paniculata_contig16709.3790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1755bp|location=Sequence derived from alignment at H-paniculata_contig16709:1946..3700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAGCTTGGCCAGTTGGTCCCCCCCGGCCAGTCCGTTACGGATGTCGA
CCTTGTCATGCAGGGGACTGGATCGGGAGCTGACGGATTCCGGCTGCTGG
ACGCGCGGTTTGTCGGTACCCCTGTGGAGCCTCCCAATGATTCTCGAACA
GTGAGTTATAATTGGATGAAAGAATATATTTGTTGGCGTGAAAAAAAATG
GACAGGAGTAGGAATACAGAACTGATCTGTTTGGTCGTCGGGTCTCGAAG
CGAATCGTATTTGGGGCTTCCAGTTCAAGTGGGTTCTTTATCTTCGAATC
GTCGTATAATTGAGTAGGTACATGTTGGAAAATAAGAAAAAAATATATTA
AATAAATGTCTATGTAATCAAGAAGCGCCTATTTATATCTTGGCTCTACG
AAGGAAACCACCATGGTGATGAAAGGCAAAACGAGCTCAAAGTACAAAAA
TATACTTGAAAAGAGTATTTTAACTTTTCTATCGGGGACGCCATAATGTT
TTGAAAAAAAGACTATTTTGTTCGATAAAAATCAACAAATTTCAAGTGAA
AAATCAACATTGAAAACGAACGGAACCCTTGAAGATATCTCGTGTGGGGA
TTCAATTAAGTAGTTTATATATATATATATGTATATATATATATTAATAA
AAAAAGGTACCCACAGTTTTACTATGGAACACGTATTTACACGAATCACT
CCATGGGTTCGGGATATCATAGCTGACATCTATCGTGACAAAAAACCACG
AAGTGGGATGGTCAATGGATGGGAGTGTACGGGGGGCACCTCTCCCTCTC
TCCAGCTAGTAGGAATCTCGTGCAAAACACGGTTTATCCTCCAGAAATAG
CAATTATAAGTGACTAACTGGGCAGCGAACAGGATATGTTGGGTCTCCCG
TGTGGATTTTCTAAAATTGTAATGCGTGTTTCGCTGTAAATACCCACGTA
CACGGGCAAGGCCTTCGTCGGCCTCCCCCCAACCGACTGTCCGTGACACG
GTTTGAGACACACCGTAACACCCTTTGATATTGGCATCCCCTGATATCAT
TGTTCAAATTTGATTTTCTCAACGACGACGGTGCTTGTGATACCAATAGC
GGCATCATAGGAGATATCTCGTTGAAATCTTTCGATAGACTTGGTGTTTC
GGCAGTGCAGTGCATACTCTCGCTTCTCGGGAAATTCATGCGTGGGAATA
GTGCCAGAGGTTAGATATCACAGGTGTTACGGTACTTGACGTGAGGTATA
CTGTCTTTATGGTCGCGATAGCAAATTTTGGTTCAAGAGTCACCTTTTTT
TTTTGGCTAATTCACGATATGCAGGTAACAAGTCGAAACCGAATGTCATG
AAAGGTTCGCAGGTCCATCCATGTTCAATGTGAAATCTGAGTTTTTATTT
ATTTTTTATTTTAAATCTCACTATAGATATCAAAATCGACCTTGGTAACA
TACAAAGTACAGGACCAGACCCCAAACTCGTGCTCACCAACAAACTATAT
TATTAGTGTTTATCCCTTTCATCTTAAATAGATCGCGCATCGTTTTTCGT
CTATTTATTACTTGTCATTTGTTTCCAATTCCTAATTAACACCACCAACC
ATTCAGGTGGGCAGCACCCGCATCGAGGAATGGACGGGTATTAGGTACCC
GGACTTCGTGGGGGCAGGCACCGGCGACCAGAAGGCAATCCAAGAGGCCA
TCTGTTCTGTCAAGAAAGCGTCGTTCGATGGCGTGGACTGCGTAGGGGGA
GATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16709:1946..3700+

>mRNA_H-paniculata_contig16709.3790.1 ID=mRNA_H-paniculata_contig16709.3790.1|Name=mRNA_H-paniculata_contig16709.3790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig16709:1946..3700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAGCTTGGCCAGTTGGTCCCCCCCGGCCAGTCCGTTACGGATGTCGA
CCTTGTCATGCAGGGGACTGGATCGGGAGCTGACGGATTCCGGCTGCTGG
ACGCGCGGTTTGTCGGTACCCCTGTGGAGCCTCCCAATGATTCTCGAACA
TTCGAGCTTGGCCAGTTGGTCCCCCCCGGCCAGTCCGTTACGGATGTCGA
CCTTGTCATGCAGGGGACTGGATCGGGAGCTGACGGATTCCGGCTGCTGG
ACGCGCGGTTTGTCGGTACCCCTGTGGAGCCTCCCAATGATTCTCGAACA
GTGGGCAGCACCCGCATCGAGGAATGGACGGGTATTAGGTACCCGGACTT
CGTGGGGGCAGGCACCGGCGACCAGAAGGCAATCCAAGAGGCCATCTGTT
CTGTCAAGAAAGCGTCGTTCGATGGCGTGGACTGCGTAGGGGGAGATGTG
GGCAGCACCCGCATCGAGGAATGGACGGGTATTAGGTACCCGGACTTCGT
GGGGGCAGGCACCGGCGACCAGAAGGCAATCCAAGAGGCCATCTGTTCTG
TCAAGAAAGCGTCGTTCGATGGCGTGGACTGCGTAGGGGGAGAT
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