mRNA_H-paniculata_contig167.3781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig167.3781.1
Unique NamemRNA_H-paniculata_contig167.3781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig167.3781.1 vs. uniprot
Match: D7FLT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.620e-24
Identity = 56/103 (54.37%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 MVSTFSRSVVAGGRSSLMRVAASRFGRVSIATTKRNMGLKTNPHVEEWMGKREITEKTFKFTPQISFSLLIGIGVFPYWVHHNIKEGMEYTDVKKFGSKREYF 309
            M S   R++  G R      A  R G V+     R  GLKTNPHVEEWMGKREI+EKTF FTP++S  LL+ I VFP  V+ NIK GME  D K+ G KREYF
Sbjct:    1 MSSALGRALSVGARGFPAAGAGRRVGEVAA----RGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKE-GRKREYF 98
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BLAST of mRNA_H-paniculata_contig167.3781.1 vs. uniprot
Match: A0A7S3UZX4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  112 GLKTNPHVEEWMGKREITEKTFKFTPQISFSLLIGIGVFPYWVHHNIKEGMEYTDVKKFGSKREY 306
            GLK N  VEEW GKREITE+TF +T Q + SLL+ +GVFP +V+   K  +E  D  K G +REY
Sbjct:   40 GLKKNAFVEEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASK-GKRREY 103
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BLAST of mRNA_H-paniculata_contig167.3781.1 vs. uniprot
Match: K0QZK4_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZK4_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 3.910e-5
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  109 MGLKTNPHVEEWMGKREITEKTFKFTPQISFSLLIGIGVFPYWVHHNIKEGM 264
            M +K NP+VEEW G+REITEK F+ T      L++    FPY ++H  ++ M
Sbjct:  154 MHVKKNPYVEEWNGRREITEKAFEVTQDNLLPLILMCVAFPYGIYHFTRKEM 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig167.3781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLT8_ECTSI3.620e-2454.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UZX4_HETAK1.120e-1153.85Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
K0QZK4_THAOC3.910e-544.23Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig167contigH-paniculata_contig167:10654..13929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001290.1
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.2149734-CDS-H-paniculata_contig167:10653..108271622929324.2149734-CDS-H-paniculata_contig167:10653..10827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 10654..10827 -
1691480816.0160685-CDS-H-paniculata_contig167:10653..108271691480816.0160685-CDS-H-paniculata_contig167:10653..10827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 10654..10827 -
1622929324.2333703-CDS-H-paniculata_contig167:13791..139291622929324.2333703-CDS-H-paniculata_contig167:13791..13929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 13792..13929 -
1691480816.0382547-CDS-H-paniculata_contig167:13791..139291691480816.0382547-CDS-H-paniculata_contig167:13791..13929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 13792..13929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig167.3781.1prot_H-paniculata_contig167.3781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig167 10654..13929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig167.3781.1

>prot_H-paniculata_contig167.3781.1 ID=prot_H-paniculata_contig167.3781.1|Name=mRNA_H-paniculata_contig167.3781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MVSTFSRSVVAGGRSSLMRVAASRFGRVSIATTKRNMGLKTNPHVEEWMG
KREITEKTFKFTPQISFSLLIGIGVFPYWVHHNIKEGMEYTDVKKFGSKR
EYF*
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mRNA from alignment at H-paniculata_contig167:10654..13929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig167.3781.1 ID=mRNA_H-paniculata_contig167.3781.1|Name=mRNA_H-paniculata_contig167.3781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3276bp|location=Sequence derived from alignment at H-paniculata_contig167:10654..13929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTCAACATTCAGTAGGTCGGTCGTCGCGGGAGGAAGAAGTTCCCT
GATGAGGGTCGCGGCGTCTAGGTTTGGGCGAGTATCGATTGCTACGACAA
AAAGGAATATGGGATTGAAGACCAACCCCCACGTTGAGGTATGTAAACAG
CGGCGCACGAAGCAACGTCGACGATAGGGCTTCCAGCAAGGTAGATAATG
TGCTTCGATTGCCTAGGTCTCTGTCGTGCATCATCTGCTAGGCTTGTGGT
GTATACACCAGGCGATTATGGGTGGTTCTTCAATTCGTGCAACAACATAG
CTTCTGCCTGTGTGAGTGACATTGTAGCTAACGTACAACCGAAGAGGTTT
GGGTATGTGGGCAAAGCACGGTCACAAAAAAACTGTAGCTACATAACACG
CGTTCCTTGGGTGCATAACACGGTCTACAATGTTTGCCCTGCCTGTTCCC
AGATCCATCCTATCGAAGAACAAACGGTATGGGAGAGTTTTTGTATCACA
CGTATACCACCCGAGCTTTTGTACCATAAAAGGCCAAGGAACTACCAATG
GTTCATGCATTCTTGGATGACAGCGAGCGCTACTAAAACATCACCGTATA
CTAGGTACACTGATGCGCACGAGTAAAGGGCTTTGGTAAAAGCACTCAAC
GAACTGACTGCACCTCTACGTGTACTGTAACTGGGTGTTGTAGGCCTGCA
GTAGTGGTAGATCCCATTTAGGTCGCTAGTGTCCGGACAGAAAAAAAACG
GCCCAAACGGGTCGACCACTTTCATACGAAGATCAAGTGCCCAGTGACTC
ATATTACCTGCCGAAAAATTGGGTCTAAAATCTCCCGTCCAAAATTGGTT
GCATTGCAAGGTTAGTACCCATTCTCCTCTTGGTTCCAATTGACACGGGA
GAAATAAAATATCCTCTAGCGAAAGATATTGGGTGTCGAGTTATGACGCT
CATTCAACCTGAAACCGTGCACGGGTTCTCATCTGTCTCCTACTGACGAT
TGCCAAATACAGATAGTTTGACCAAAAGGCTGGTTGCTCCACGAAGCTAG
TCACTATTTTGGCACCTGACACCTTTTCCCCTAAAATAGCGTGTTTTCTT
CAGCACCAGGGCAATACATCACTCCAACCTCATATTGTTGGAGCCAAGCC
TTGTTTCACTTCTACAGCTGCGGTTAGCGTTGAATCACCAGCACCTCTCG
GTAGATTCTGGGGGCTGGACTCTTTTGGAATTGTCCCCTCCCATGCCACG
TGCAAACGCTTCACCCCCTGGACAAGCACCAATACCTGGCGTACTTGCAC
GAATATTGAACAGTATTCGCCTGAGTTTCGGAACGAGCTCGTGTATTTTA
TGGGCCCCGGACCACCCACAACTGCTAATAATACTCGTAAATCAAATGGC
CAGGGGTGGGTACTGTATTCTATGTACCCGCTCATTCTGAAACTTGGGTG
AATGACTTCATTTTCGTGGCGAAGACGCCAAGTACTCGTATTTATCTGGG
GGGGTGAAACGCCTCATTATTTTCCCGAAGAATGAGAAGAAAACGATGGA
ACAAACACTCATGACAACCATATACAGTGGGGGGGTCAGACTTAGGCGTG
GAAAACGTTACCCAACCAATCGTATGATTCGCTCGGGATGAAGGTGTCTA
GTGCAATGCCTCCGCTCAAAACATTAGCCCAAACACTATTATTATTATAA
AACGCGTATGAAGCCAAGTAGTCAGTCAGTATACTCAAAATATAATTTCA
GTATCGTAGTCAAGTAGGTATTGTGCAATAGGGTACCGGTAACGCTCAGG
TGTCATTCACCATGGCACGAAACAGAAGTGAGTCTCTCGCGACGTAGACT
GTACGTATCACACGCATGCGTCGGATTCATGACTCAGCTAGCTTTTCCTC
CTCCTGACTGCCAAACGTTCATCAATGACGCCAACGCAGTAGCCTCCGAA
AATGGGTCCGATGCAACCAGTCACATGATTGCTGACTCGGCCATCAGTAG
CGGTCAGTACAGTAGACAAGTCAGTATAAAAAAAAACGTGGGTGCCTTAT
ACTAGGTAGTACAGGTAGCCACAGTATATATCATTTTGAGGCGCGACAGC
ATTGAACTACACACGGTACGGTCCCGTACGGCACAGTCAGCAGGGAAGTA
GCACTGACATGTTGTCCACCTCTGCGTCGCTTGTGAGCTCGGAGGATACA
TCTGGCTTTACGAGCAGAGACCGTTACGTTGAGCGAAGAGCGTACTACAA
CTTCTATTATTCGGTTTTCTACCCATTAACCTGAGCCCACTAAGTAAGGA
CACCCAATTTCCTCCATGTCATCAAGGCATCCCATGCGCCTCGTTGGGTC
GGATAATGACCGCTTTAGGGTTTGCAATCATCTCTTGGAGAGGCCAGGCA
CATCATCTACATACGGAATACGCAGCAAGTGTTTTTTCGCCTGCGGGATG
TTTTGTGGCTAGCTGTAGGCATTTTGGTCTCACGTTCCGCCCACTGAAAA
TTCTCGCGGTCAACCAGATGGATTTTGTTTGAGTGTACAGCAATCCTTCG
CGGGAAATAGACAGTTCCGAAACTCCCAAGTAAGATTCTTTTCATAGCTT
GCTGGGTCTATGTCATCAATCCCAATCATCCAGTATCATGTCCTTTCTCG
AGTGACACCTCCCTTCATGTCACACTGTACTTTGGTTCTCTCCTGTAGAG
AGCTAGATTCTGTTGGGCTAAGCTCTTTTTTCTCGCGAGCTCGGTCAACA
TAGTGAAGGTTCAAGGTCCACACGTCGGACGGATCAAAATCGGTACGAAT
TGGCTGGGACAGAGTTGCCGTGGATAACTGTGTGCTAACGATCGGTAGAG
GATCGATCAAAGATGGAAACCATGTAAGAATCAAACGTGTGCACCGATAT
TACTACATATCGTTGTGGAATGGTTTGTTCGTTCCAATTACCAATCCTAT
TGTCTATGAGCCAACGATCAGTAGGGTACCTATAATTCGAACTATTGATG
CAAAAGGAGCTGTACGAACTGTGAACTATCTTATCGATCATCATGTGAAT
GTTCTAAGGTTGCATAGTTTCTTCCCCCTGCCGCCGTCTTTCAATGCCCC
AGGAGTGGATGGGAAAACGAGAGATCACAGAGAAGACGTTCAAGTTCACT
CCGCAGATCAGCTTCTCGTTATTGATCGGCATCGGTGTGTTTCCGTACTG
GGTTCACCACAACATTAAAGAAGGCATGGAGTACACCGATGTGAAGAAGT
TCGGAAGCAAGCGCGAATACTTCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig167:10654..13929-

>mRNA_H-paniculata_contig167.3781.1 ID=mRNA_H-paniculata_contig167.3781.1|Name=mRNA_H-paniculata_contig167.3781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig167:10654..13929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTCAACATTCAGTAGGTCGGTCGTCGCGGGAGGAAGAAGTTCCCT
GATGAGGGTCGCGGCGTCTAGGTTTGGGCGAGTATCGATTGCTACGACAA
AAAGGAATATGGGATTGAAGACCAACCCCCACGTTGAGATGGTTTCAACA
TTCAGTAGGTCGGTCGTCGCGGGAGGAAGAAGTTCCCTGATGAGGGTCGC
GGCGTCTAGGTTTGGGCGAGTATCGATTGCTACGACAAAAAGGAATATGG
GATTGAAGACCAACCCCCACGTTGAGGAGTGGATGGGAAAACGAGAGATC
ACAGAGAAGACGTTCAAGTTCACTCCGCAGATCAGCTTCTCGTTATTGAT
CGGCATCGGTGTGTTTCCGTACTGGGTTCACCACAACATTAAAGAAGGCA
TGGAGTACACCGATGTGAAGAAGTTCGGAAGCAAGCGCGAATACTTCTAG
GAGTGGATGGGAAAACGAGAGATCACAGAGAAGACGTTCAAGTTCACTCC
GCAGATCAGCTTCTCGTTATTGATCGGCATCGGTGTGTTTCCGTACTGGG
TTCACCACAACATTAAAGAAGGCATGGAGTACACCGATGTGAAGAAGTTC
GGAAGCAAGCGCGAATACTTCTAG
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