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Homology
BLAST of mRNA_H-paniculata_contig167.3780.1 vs. uniprot
Match: D7FLT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 1.130e-13 Identity = 62/189 (32.80%), Postives = 97/189 (51.32%), Query Frame = 3
Query: 114 FDPQSFVNVGSWLSMQDRQAMESASTQTNSLXXXXXXXXXXXXXXXXXXXXXEARTRIA---RLKYLVCILLIAVVMLLGTNALFCVQRSALKSQNAALEARAIELEALAKNARKYHEPKMSPATGSNACE-AELIDTCWFKVGFGNCAKQAWVNPVGVAEGAWRSAWDSTVEFAEELSRAVVNDIHQL 668
F P +FVNVG++LS Q+ ++++T+S + ++ R +V LL VVMLLGTNA Q A K++ ++L + +LEA A+ + +P S +T S C ++LIDTCWFKVG+G+CA +A +PV E A+R A DS ++ +D+ Q+
Sbjct: 35 FHPDTFVNVGNFLSSQESSERARSTSETSSQTPPPATIASVSTVTHVVDPSAPLTSLLSGGSRAGRIVLGLLAVVVMLLGTNAYSYNQSRAWKAETSSLREKVGKLEAAARTSAS--KPTWSTSTSSTTCPGSQLIDTCWFKVGWGDCANEALEDPVKPIEDAFRFALDSASGVIGAVTETFASDMSQV 221
BLAST of mRNA_H-paniculata_contig167.3780.1 vs. uniprot
Match: D7FLT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 1.030e-12 Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = -3
Query: 2565 EWMGKREITEKTFKFTPQISFSLLIGIGVFPYWVHHNIKEGMEYTDVKKFGSKREYF 2735
EWMGKREI+EKTF FTP++S LL+ I VFP V+ NIK GME D K+ G KREYF
Sbjct: 43 EWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKE-GRKREYF 98
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_001320.1 |
| Exons | 5 |
| Model size | 2737 |
| Cds size | 699 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig167.3780.1 >prot_H-paniculata_contig167.3780.1 ID=prot_H-paniculata_contig167.3780.1|Name=mRNA_H-paniculata_contig167.3780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MKSDSKGESKVESSSSRSLDFDPQSFVNVGSWLSMQDRQAMESASTQTNS
LRTRSIASATISTDSRSTDSDSEARTRIARLKYLVCILLIAVVMLLGTNA
LFCVQRSALKSQNAALEARAIELEALAKNARKYHEPKMSPATGSNACEAE
LIDTCWFKVGFGNCAKQAWVNPVGVAEGAWRSAWDSTVEFAEELSRAVVN
DIHQLGKELHDLGGAVSSFLGGACSSSPGSEP* back to topmRNA from alignment at H-paniculata_contig167:6147..10829+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig167.3780.1 ID=mRNA_H-paniculata_contig167.3780.1|Name=mRNA_H-paniculata_contig167.3780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4683bp|location=Sequence derived from alignment at H-paniculata_contig167:6147..10829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCACTCACCTCAATCCTCGCATCTCCAGCCTAGGCTAATCGTTGTC
AACATGAAATCTGATTCGAAGGGTGAATCAAAGGTGGAAAGCAGTTCAAG
CCGAAGCTTGGACTTCGATCCTCAAAGCTTCGTCAATGTCGGGTAAGAGA
AGCGTTCAAAAAGAAGAGGTGCCTTCCCACTACTTTTTGTAACTGTCTGT
TGTTGAGTCTCATCTACTCATACAGTTCAACACGTGGACGCGCTGTGTTT
GTACTGTGGTCAGGTCGAGGCAGAGCACAAAAGGAGGGTTATCTGGAAGC
ATATCATCTTATCTGAGTCGCACGCCACTCTTGTACGTGTCTATCCCTCT
CGCCAGTATCAGTACAGCATGTCATCGCATTCGCCGTGATTCAATTTGAA
CTTTGGGTGCCAGTTATGTACCATCAGTACTATAAACCAAATACAAAGAG
AGAGAAACTGTGTATATCTACCCGATGATTTACCTTTTTTCTTTTTTTTT
TAATCCCCTGAAGGCTAAGGCAAAAACCTCTATTTGATGCTTCCATACCG
AAGAACGTCTAGCGATGATCTACCTTGAATCTCCCTAACCTTGTAACTAA
CCGAGTTTACGACTGCGCCAGCTTTTTGTATAGATTCGTCTATTTGTACT
TGCTAGAACTTTGCTTGCTGGGCCACATATCTTTCTGCCCCGTATCGCAT
GAGCTGCAAACGCGTGTTCAGCGGTAGCTGCTGATTCATGCTCATCTCAT
GGCGTCACACCATTAGCCTTCGTCTCAGGATGTCTTGTTCAAAAAACACC
CCTGCGGACGCTTGACCTTCGACCGTGAACGGTTGCGGTTGATACCATTA
CCTTAACATTAATCGATCAGCAGGAGCTGGCTCAGCATGCAAGACAGACA
GGCTATGGAATCTGCCTCCACGCAGACGAATTCCCTGCGAACACGGTCTA
TCGCTTCCGCCACCATCAGCACCGATTCCCGTTCCACCGACAGCGATTCC
GAAGCACGCACGCGCATCGCGCGACTCAAGTATCTCGTGTGTATACTGCT
CATCGCAGTGGTGATGCTATTGGGGACGAATGCACTCTTTTGTGTACAAC
GCAGTGCTTTGAAGGTACGGGTTAGGATAATGCCCTCGGTATTGGGCAAG
GGGGTATTTGCTTTGCGCTTGTGTTTCATTGTAAATAGATAGTTACAAAT
AATGGGACAGAAACGTCACTGGATGTTATGTGGGGGGACCAGAGTTCAGA
AAGGTCAGGCACGTCCTCTCCACGCTAAGGGGCATAATATCATTTTTGCA
TAGCCTCACTTGTGTAAAATTATTATTTTTTGCGGTGGTCAGTAAAACCA
AGTAACATATTCTTACCCGCAACCGTCGGAAAGCTACACGTATCATGATT
TGGAGAAAAAAAATGGCTCAACATAACTCGGATAACGTCTCATGTCTTGA
TGCAAAAATCATGATCGCAAGGCTAGATTGTTTGGAAACGTTATCTACCC
TGAATAACCCTTTTTGTTCTTGCGGATCCTTCTGGTACTACAGTCACAAA
ACGCCGCGCTGGAAGCACGCGCCATAGAGCTGGAAGCCCTCGCGAAGAAC
GCCCGCAAGTACCACGAACCGAAAATGTCACCGGCGACGGGAAGCAACGC
CTGTGAAGCTGAACTTATCGACACTTGCTGGTTTAAGGTGCGTGGTGTGA
TTGCTGACGATATTTATCGGGTTTTCTTTCAAGGCAACAACAATTATGTG
TATACGCTCTCCCGGTGGAGCTGCTTGCGGGCAACGCTTGGGCGCGAAAC
TCTGTACGCGTTGCCTTATTAGGGGCTTCGACAGCACCTACTTTCAGGCG
GACGTGGCTCTTCTTCTAGGTGTTGATTGTACCATAGTTGCTGTTGTTTC
CATTGTCGTGGTGTGTAGAAATATCGCGATGATGTGGCCTTTGGACCTCT
CGTGGAAAGGATTATGCTGTATATTGATTCCGAATCCTCCATGTGTCAGC
TACACGCCCAAACGAAGATTGCTAATGTTTCCATTTGCCACGTCTTGAAT
GGAAAATACGGCACCGCATTGCAGTTGCGGCCTAGGCGGCTTGGCATCGT
AACCATTACGCCCATAGTTCTTCAGGATACCTCTGGTCTTCACTCGTTCT
GTTTTTTCTGATTCTGGCCTTTTCTTCTTTTACTATTGTGATGTTGAGGT
GGGATTCGGAAACTGCGCAAAGCAGGCCTGGGTGAATCCTGTCGGCGTTG
CGGAGGGCGCTTGGCGCTCGGCGTGGGATTCCACCGTAGAATTCGCGGAG
GAGCTAAGTAGAGCCGTCGTCAACGACATCCACCAGGCAAGTGTTTTGTG
GCCTGTTGAGCCCTGCGCTCTACCCGTTGTACTATGCGTCACTAGTAGTA
CTGACAGTATACAGTTGTCCTATGCCATTTTCGAACGATGTTCACAGTTG
TACCTTCTCGCATGGTCAAACGACTCTAACTGCCTTAGTTGGTCATGGGT
TGCTGATTACTATTTATAGACGTGATCGTAGGCTACATAACTCCTCGTCC
TATGTCGCTCACATGCGAGTATCCTATCCCGTATTCGTGTTTCTGCTGCT
ACGGTGCCCAGTTGGGCAAGGAACTTCACGATTTGGGCGGTGCTGTATCG
AGCTTCTTGGGGGGTGCGTGTAGCAGCTCACCTGGCTCAGAACCCTGAAC
GAATGCGAAGAGGAGTCGAAGGCGGGTTGATCAACGACCCATCTCTTCCG
GTGACGGCGTGTTTGGCGTCGATGCGACCCGAACAAACCGGGTTACCAGT
GTACGTTGCTTTTTTCTCTCGAAACAATTTTGCGAGAATTTTCCTTGATC
TGAGTGAGCCATTGCGGTAGGGTCGGTCCCGAAGATACACGAGATTACAC
GCTCAGAGGACGACTGATGGGGTCGAACTGATACATGACCCCAACACAAC
CTACGGTCGATGGAAATTACTGTGAATAAGACGGGGTGCGGGAATTGTCT
GTACGAAGTGATCTGTCCCACTATCGGGTTGGGTCATGCATTTTGTGGGT
TCAGCTCGCACAGTACATCTGTCCCAAGGGGTGGAAATAGGCGGGTTACT
ATGTGAATTGACCATAAGAAGGTATAACCTAACCATCCAAGTACTCACTT
TGCGATGCCGCACGGTCAGAGGGCAACCGTTGTTTTTCATTTTTTTCATG
TTTTCATCTCATGTGCACGACGTTACACGTAGTGGGTGGGAGGGATTGAC
AAGGTGACCCTTTGAAAATATTGGTATTGTATGACAGCCACGTTCTGATT
AAGCGTTGTGAAAGACAAGGGTAGGATAGAGCCCTCCTGGGATGGCGAGA
CTTGATGGGTATGGATCCCAAGCGTCACATACACTGCGAAGGTGGTGTAG
GTTGAAAGGTATTTTAGAATAGGACAGCGGCTGCGAGACAATGTATACAA
ACTTGATTGAACGTATTGACCGGAGTGCTCGATACTATTTTTTCAATCGG
GGGATGCCTTGCTGGGGTGATTAGTTATTTATGTGGAATGTTATAGTGTT
GTAAATATGAACACGCAGATGTATGCGGATATTCCGGGTACACACAACAA
TTGGATCCTACGTGAACCAGGAAATGTTGTATCCCGTTACGTTGCGAACG
AAAAGTTGCATGGACGTAATTGTGGGCAGCGGCACTTGGCAGTGTGTAAC
ATGGTCGTTGAAGAACCCCATATTTTTCTTGGACACCACGATAGTTAAAG
GTGAGAACGCACGTATTTGCCCACCGGACCGCAATTTTTATCATCGAGAA
TTTCACCCGTGCCATGATATGACCTTGACACTTCGGAAAATATATGTTGG
GAATGTCCGCGCGTCTACTAAAAAACTGTCATCGGTTATAGCTTCATCTT
CAAGCACATTTTAAACTCTCCCAGAAAGAACGCGCATCTCGCCTCTAGCG
TGACACTTGCGAGTTGACCCACGGGAGTGTGACGACATCACCACCCAGAG
TAGGTACATAAACCCTCGATCACAAGACAGGAGAATCTTGCTTCAAGCTT
GGAAGCAAATAACAAACTAGATGTGCCCACACACGTTGCTGCTGTTTTTT
TGGGGGGTTTTACGCTCATGTTATACACCATCCCGTAGTTACCGGGTGCA
AAAAGGTGTTTAACCTCCCCGTCTCTGAGACACAAAATATTATCAAAATA
AACTGCCCATCGTTTTGCCGAGGAAAAACCTAAGGTTTCCCCGCAGCGGT
AACCGAATCTTCGCGATCCAGCATGAGACAAAAATGTTCCAAGTACGTTG
TGTAGGTTACACCACTCTCTACGAAAGCGGGTATCAACGCGCGCGTTTTT
ACTGAACATGCCTACTTTTCTAAATTATCCCGATAGCCCATTACGTTTCA
TCATAATGCTCCGTTCAAGTGTATCAAAGTCCATGGTCCACGCCCTCCCC
CCTATCGCCCTACCCTAGAACATTTATTCAAATATATAGATGGAGCACGA
GGTTGACCTAGAAGTATTCGCGCTTGCTTCCGAACTTCTTCACATCGGTG
TACTCCATGCCTTCTTTAATGTTGTGGTGAACCCAGTACGGAAACACACC
GATGCCGATCAATAACGAGAAGCTGATCTGCGGAGTGAACTTGAACGTCT
TCTCTGTGATCTCTCGTTTTCCCATCCACTCCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig167:6147..10829+ >mRNA_H-paniculata_contig167.3780.1 ID=mRNA_H-paniculata_contig167.3780.1|Name=mRNA_H-paniculata_contig167.3780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig167:6147..10829+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATCTGATTCGAAGGGTGAATCAAAGGTGGAAAGCAGTTCAAGCCG
AAGCTTGGACTTCGATCCTCAAAGCTTCGTCAATGTCGGATGAAATCTGA
TTCGAAGGGTGAATCAAAGGTGGAAAGCAGTTCAAGCCGAAGCTTGGACT
TCGATCCTCAAAGCTTCGTCAATGTCGGGAGCTGGCTCAGCATGCAAGAC
AGACAGGCTATGGAATCTGCCTCCACGCAGACGAATTCCCTGCGAACACG
GTCTATCGCTTCCGCCACCATCAGCACCGATTCCCGTTCCACCGACAGCG
ATTCCGAAGCACGCACGCGCATCGCGCGACTCAAGTATCTCGTGTGTATA
CTGCTCATCGCAGTGGTGATGCTATTGGGGACGAATGCACTCTTTTGTGT
ACAACGCAGTGCTTTGAAGGAGCTGGCTCAGCATGCAAGACAGACAGGCT
ATGGAATCTGCCTCCACGCAGACGAATTCCCTGCGAACACGGTCTATCGC
TTCCGCCACCATCAGCACCGATTCCCGTTCCACCGACAGCGATTCCGAAG
CACGCACGCGCATCGCGCGACTCAAGTATCTCGTGTGTATACTGCTCATC
GCAGTGGTGATGCTATTGGGGACGAATGCACTCTTTTGTGTACAACGCAG
TGCTTTGAAGTCACAAAACGCCGCGCTGGAAGCACGCGCCATAGAGCTGG
AAGCCCTCGCGAAGAACGCCCGCAAGTACCACGAACCGAAAATGTCACCG
GCGACGGGAAGCAACGCCTGTGAAGCTGAACTTATCGACACTTGCTGGTT
TAAGTCACAAAACGCCGCGCTGGAAGCACGCGCCATAGAGCTGGAAGCCC
TCGCGAAGAACGCCCGCAAGTACCACGAACCGAAAATGTCACCGGCGACG
GGAAGCAACGCCTGTGAAGCTGAACTTATCGACACTTGCTGGTTTAAGGT
GGGATTCGGAAACTGCGCAAAGCAGGCCTGGGTGAATCCTGTCGGCGTTG
CGGAGGGCGCTTGGCGCTCGGCGTGGGATTCCACCGTAGAATTCGCGGAG
GAGCTAAGTAGAGCCGTCGTCAACGACATCCACCAGGTGGGATTCGGAAA
CTGCGCAAAGCAGGCCTGGGTGAATCCTGTCGGCGTTGCGGAGGGCGCTT
GGCGCTCGGCGTGGGATTCCACCGTAGAATTCGCGGAGGAGCTAAGTAGA
GCCGTCGTCAACGACATCCACCAGTTGGGCAAGGAACTTCACGATTTGGG
CGGTGCTGTATCGAGCTTCTTGGGGGGTGCGTGTAGCAGCTCACCTGGCT
CAGAACCCTGATTGGGCAAGGAACTTCACGATTTGGGCGGTGCTGTATCG
AGCTTCTTGGGGGGTGCGTGTAGCAGCTCACCTGGCTCAGAACCCTGA back to top
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