mRNA_H-paniculata_contig167.3784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig167.3784.1
Unique NamemRNA_H-paniculata_contig167.3784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig167.3784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig167contigH-paniculata_contig167:37071..39955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-26_001270.1
Exons2
Model size2267
Cds size2265
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.9585266-CDS-H-paniculata_contig167:37071..391991622929323.9585266-CDS-H-paniculata_contig167:37071..39199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 37072..39199 -
1691480815.9306333-CDS-H-paniculata_contig167:37071..391991691480815.9306333-CDS-H-paniculata_contig167:37071..39199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 37072..39199 -
1622929323.9720414-CDS-H-paniculata_contig167:39818..399551622929323.9720414-CDS-H-paniculata_contig167:39818..39955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 39819..39955 -
1691480815.941875-CDS-H-paniculata_contig167:39818..399551691480815.941875-CDS-H-paniculata_contig167:39818..39955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig167 39819..39955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig167.3784.1prot_H-paniculata_contig167.3784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig167 37072..39955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig167.3784.1

>prot_H-paniculata_contig167.3784.1 ID=prot_H-paniculata_contig167.3784.1|Name=mRNA_H-paniculata_contig167.3784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=755bp
SGEQEAGLSSQDSSAVVELVPPVESPAESVVSMSQQQSQGRRAPKKRSRL
SLHKRESEAHPEKSARCPEEQPPKLKEAKNESRKFEDESGADTAVGQRAV
GREDAKPGAIPGTGSSDSSDNDGSSRGGTADQGAEVLQNGDKRDPAANGR
CKGDGEVSPPNGKRENRFPAKQRPSEATLADEDSANNQAQADNPPREENG
TTHIDSTIHEDAQNMMTRQTGISPGNAPVPIKLPAKKGMDVDFGDDSGSS
DDENGAEAAQSKGAAHLGQAMDGERDSPILARGTTGTHVSSTGARTRQAK
PFDDPADDSPGFPGTPEADDFAQVQSTAAAQTPPRKQHQPGDTAGDNKDG
APKAEGSPNPSLSSMGLVDTPPPAPPAPSSTSGTGGSTRRKTTRKSPTPR
KGSDVLASTGGECSVNQSATSPAASELKGGKWACTRCTLVNRARVKVCDA
CAMAKPTVSAGASCSATSIGSSSSRGSNPRKRKAASDHPSGDDGQSGTEG
DAKRGGLGDLGDGTQGDCEARSREATKKSRAAAKSAGGDDDGRETGSGGD
EGGRSRRFVSTSTTKNQKNDVEVLEGLNGFVGDIGAMTFDADDFGCGSDD
CDDDDGERFDEDDDEDWKEDGGEDDDDDVEAGEGERDSEIIGSQIEKQLK
RVLQQDCGRDNRSSPGAGPSREKRKRQAPPVAGEVLDLTEAAEDSPDELS
GYGKSRRDGAGRPYGDDPLNNPRYIVEDISDDDDATVNPGFGGYWNPKAA
GGGAG
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mRNA from alignment at H-paniculata_contig167:37071..39955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig167.3784.1 ID=mRNA_H-paniculata_contig167.3784.1|Name=mRNA_H-paniculata_contig167.3784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2885bp|location=Sequence derived from alignment at H-paniculata_contig167:37071..39955- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGGGGAGCAAGAGGCGGGCTTGTCTTCTCAGGACAGTAGTGCAGTGGT
CGAACTGGTGCCGCCGGTGGAATCGCCGGCGGAGTCTGTCGTATCGATGT
CGCAGCAACAGTCGCAAGGACGAAGAGCCCCCAAAAAGTGAGTGGAACCA
TGGGTTTGGTTCGTATTTCAGTGGTGGTGCTGTGGATTTTTGTTGTTGTT
GACGATGATGATGATATCAATGTGTGCAACGAGCCAGTTTAATGTTGTCC
TAACCGAATCTATCGACCAAGTTATTCAAAATCACCCCAACAGTTCAGCG
GTAGTTGATGGCGACAGCGTGAATGGCATAGCGGTATAAAATCTTTCCAA
CACGCAAGTAACATATGCAATACCGAGACTGCCAGGTCCGGCGCATTTGC
TTCCTCGAATCCATCTCTGAAGTAGAGGCCATTGCGTGCCTCTTGAACGC
GTCATCAGGTCGTCCATCAAATTACCAACAATCTCCGGCGGGGGGTATTG
GAATGTCATGAGTAACGTCAACTACACTGCTTAGCATCCTGCCATTGCCT
GTCGAATGGTACACTGTTTCCAGTGTTTTATCAATATTTAGACTTCAGCC
TGCAACATCCGCGAACGTGAGAACAAAATATTGCGACTAGTCGGTCATTT
TGTTTTGCAACTCCGACATGTTTTGATTGGTTGCTACCAACCAATTGAGT
AAATCGTCTAATCACATGCCGCCCACCCGTTGTTCCCCGCGTACTTTTTT
TCACAGACGCTCGAGACTGAGCCTTCACAAGCGCGAGAGCGAGGCGCATC
CTGAGAAATCTGCAAGATGCCCAGAAGAGCAACCTCCGAAGCTGAAGGAG
GCAAAAAACGAGTCAAGAAAATTTGAGGACGAAAGCGGCGCAGATACAGC
GGTGGGGCAGCGGGCGGTGGGTAGAGAGGACGCCAAACCCGGGGCGATTC
CAGGCACCGGTTCGTCAGATTCTTCGGACAATGATGGCTCTTCTCGAGGT
GGTACTGCTGACCAAGGTGCGGAGGTACTGCAAAATGGAGACAAACGGGA
TCCAGCCGCGAATGGCCGATGTAAGGGCGATGGTGAAGTATCCCCTCCCA
ACGGGAAACGCGAGAATCGATTCCCTGCGAAACAACGGCCGAGCGAGGCA
ACGCTCGCAGATGAGGATAGCGCAAACAACCAAGCGCAAGCTGATAATCC
GCCGCGCGAAGAGAACGGAACCACTCATATCGACAGCACAATTCATGAAG
ATGCCCAGAACATGATGACTCGACAGACGGGCATTAGCCCAGGAAATGCC
CCCGTGCCAATAAAGTTGCCGGCGAAAAAGGGTATGGACGTAGACTTCGG
CGATGACTCCGGTAGCTCTGACGACGAAAATGGAGCCGAGGCTGCCCAGA
GTAAGGGAGCAGCGCACCTTGGACAGGCTATGGATGGAGAACGCGATTCC
CCAATTCTCGCCCGCGGTACCACTGGCACACATGTCTCTTCTACCGGTGC
GCGAACGCGACAAGCAAAACCATTTGATGACCCCGCTGACGATAGTCCGG
GTTTTCCTGGAACGCCGGAAGCTGATGACTTTGCGCAAGTGCAATCGACG
GCAGCTGCTCAAACCCCGCCCAGAAAGCAGCATCAACCGGGAGATACAGC
GGGCGATAATAAAGACGGTGCTCCGAAGGCAGAAGGTAGCCCGAATCCAT
CGCTCTCGTCAATGGGACTGGTCGATACCCCTCCGCCTGCCCCCCCAGCC
CCGTCATCTACATCGGGAACAGGGGGCTCGACCAGGAGAAAGACGACCCG
AAAATCGCCTACGCCGCGGAAAGGATCAGATGTGCTAGCATCGACTGGTG
GTGAGTGCTCTGTCAACCAGAGCGCCACGTCACCTGCAGCCAGTGAACTC
AAGGGGGGAAAATGGGCGTGCACAAGGTGTACGTTGGTAAACAGGGCGAG
GGTAAAAGTCTGCGATGCATGTGCCATGGCGAAGCCGACGGTTTCGGCAG
GCGCAAGTTGCAGTGCAACGAGTATAGGATCAAGTAGTAGCCGTGGTTCG
AACCCTCGCAAGCGTAAGGCGGCGTCGGACCATCCGTCTGGAGATGATGG
TCAAAGTGGCACGGAGGGCGACGCGAAGAGGGGTGGGTTGGGTGATCTGG
GTGATGGAACGCAGGGTGATTGTGAGGCACGTAGCCGAGAAGCGACCAAA
AAAAGTCGTGCCGCAGCAAAATCGGCTGGTGGTGATGACGATGGACGGGA
GACGGGAAGCGGGGGTGATGAAGGCGGTCGTTCTCGCAGGTTTGTATCGA
CGTCGACAACGAAGAACCAAAAAAATGACGTGGAGGTTCTCGAGGGACTG
AACGGATTTGTCGGTGATATAGGCGCGATGACTTTTGACGCCGACGATTT
TGGTTGTGGTTCGGACGACTGCGATGATGACGACGGCGAGCGTTTTGACG
AAGATGATGATGAGGATTGGAAAGAAGACGGAGGCGAGGACGACGATGAT
GACGTTGAGGCTGGGGAAGGAGAACGAGACTCAGAAATAATCGGGTCGCA
GATTGAAAAACAGCTAAAAAGGGTGCTGCAACAGGACTGCGGTCGAGACA
ACCGTTCGTCGCCGGGAGCGGGACCCTCGCGCGAAAAGCGGAAGCGCCAA
GCTCCGCCGGTAGCGGGAGAGGTCCTTGATCTCACTGAGGCTGCAGAAGA
CTCTCCAGACGAGCTAAGCGGCTACGGAAAAAGCCGTCGAGACGGCGCCG
GACGGCCATACGGCGATGACCCACTCAATAACCCCCGTTATATCGTCGAA
GATATCTCCGATGATGACGATGCCACGGTCAATCCAGGCTTCGGGGGCTA
TTGGAATCCCAAGGCGGCAGGGGGCGGTGCGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig167:37071..39955-

>mRNA_H-paniculata_contig167.3784.1 ID=mRNA_H-paniculata_contig167.3784.1|Name=mRNA_H-paniculata_contig167.3784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4530bp|location=Sequence derived from alignment at H-paniculata_contig167:37071..39955- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGGGGAGCAAGAGGCGGGCTTGTCTTCTCAGGACAGTAGTGCAGTGGT
CGAACTGGTGCCGCCGGTGGAATCGCCGGCGGAGTCTGTCGTATCGATGT
CGCAGCAACAGTCGCAAGGACGAAGAGCCCCCAAAAAAGTGGGGAGCAAG
AGGCGGGCTTGTCTTCTCAGGACAGTAGTGCAGTGGTCGAACTGGTGCCG
CCGGTGGAATCGCCGGCGGAGTCTGTCGTATCGATGTCGCAGCAACAGTC
GCAAGGACGAAGAGCCCCCAAAAAACGCTCGAGACTGAGCCTTCACAAGC
GCGAGAGCGAGGCGCATCCTGAGAAATCTGCAAGATGCCCAGAAGAGCAA
CCTCCGAAGCTGAAGGAGGCAAAAAACGAGTCAAGAAAATTTGAGGACGA
AAGCGGCGCAGATACAGCGGTGGGGCAGCGGGCGGTGGGTAGAGAGGACG
CCAAACCCGGGGCGATTCCAGGCACCGGTTCGTCAGATTCTTCGGACAAT
GATGGCTCTTCTCGAGGTGGTACTGCTGACCAAGGTGCGGAGGTACTGCA
AAATGGAGACAAACGGGATCCAGCCGCGAATGGCCGATGTAAGGGCGATG
GTGAAGTATCCCCTCCCAACGGGAAACGCGAGAATCGATTCCCTGCGAAA
CAACGGCCGAGCGAGGCAACGCTCGCAGATGAGGATAGCGCAAACAACCA
AGCGCAAGCTGATAATCCGCCGCGCGAAGAGAACGGAACCACTCATATCG
ACAGCACAATTCATGAAGATGCCCAGAACATGATGACTCGACAGACGGGC
ATTAGCCCAGGAAATGCCCCCGTGCCAATAAAGTTGCCGGCGAAAAAGGG
TATGGACGTAGACTTCGGCGATGACTCCGGTAGCTCTGACGACGAAAATG
GAGCCGAGGCTGCCCAGAGTAAGGGAGCAGCGCACCTTGGACAGGCTATG
GATGGAGAACGCGATTCCCCAATTCTCGCCCGCGGTACCACTGGCACACA
TGTCTCTTCTACCGGTGCGCGAACGCGACAAGCAAAACCATTTGATGACC
CCGCTGACGATAGTCCGGGTTTTCCTGGAACGCCGGAAGCTGATGACTTT
GCGCAAGTGCAATCGACGGCAGCTGCTCAAACCCCGCCCAGAAAGCAGCA
TCAACCGGGAGATACAGCGGGCGATAATAAAGACGGTGCTCCGAAGGCAG
AAGGTAGCCCGAATCCATCGCTCTCGTCAATGGGACTGGTCGATACCCCT
CCGCCTGCCCCCCCAGCCCCGTCATCTACATCGGGAACAGGGGGCTCGAC
CAGGAGAAAGACGACCCGAAAATCGCCTACGCCGCGGAAAGGATCAGATG
TGCTAGCATCGACTGGTGGTGAGTGCTCTGTCAACCAGAGCGCCACGTCA
CCTGCAGCCAGTGAACTCAAGGGGGGAAAATGGGCGTGCACAAGGTGTAC
GTTGGTAAACAGGGCGAGGGTAAAAGTCTGCGATGCATGTGCCATGGCGA
AGCCGACGGTTTCGGCAGGCGCAAGTTGCAGTGCAACGAGTATAGGATCA
AGTAGTAGCCGTGGTTCGAACCCTCGCAAGCGTAAGGCGGCGTCGGACCA
TCCGTCTGGAGATGATGGTCAAAGTGGCACGGAGGGCGACGCGAAGAGGG
GTGGGTTGGGTGATCTGGGTGATGGAACGCAGGGTGATTGTGAGGCACGT
AGCCGAGAAGCGACCAAAAAAAGTCGTGCCGCAGCAAAATCGGCTGGTGG
TGATGACGATGGACGGGAGACGGGAAGCGGGGGTGATGAAGGCGGTCGTT
CTCGCAGGTTTGTATCGACGTCGACAACGAAGAACCAAAAAAATGACGTG
GAGGTTCTCGAGGGACTGAACGGATTTGTCGGTGATATAGGCGCGATGAC
TTTTGACGCCGACGATTTTGGTTGTGGTTCGGACGACTGCGATGATGACG
ACGGCGAGCGTTTTGACGAAGATGATGATGAGGATTGGAAAGAAGACGGA
GGCGAGGACGACGATGATGACGTTGAGGCTGGGGAAGGAGAACGAGACTC
AGAAATAATCGGGTCGCAGATTGAAAAACAGCTAAAAAGGGTGCTGCAAC
AGGACTGCGGTCGAGACAACCGTTCGTCGCCGGGAGCGGGACCCTCGCGC
GAAAAGCGGAAGCGCCAAGCTCCGCCGGTAGCGGGAGAGGTCCTTGATCT
CACTGAGGCTGCAGAAGACTCTCCAGACGAGCTAAGCGGCTACGGAAAAA
GCCGTCGAGACGGCGCCGGACGGCCATACGGCGATGACCCACTCAATAAC
CCCCGTTATATCGTCGAAGATATCTCCGATGATGACGATGCCACGGTCAA
TCCAGGCTTCGGGGGCTATTGGAATCCCAAGGCGGCAGGGGGCGGTGCGG
GCACGCTCGAGACTGAGCCTTCACAAGCGCGAGAGCGAGGCGCATCCTGA
GAAATCTGCAAGATGCCCAGAAGAGCAACCTCCGAAGCTGAAGGAGGCAA
AAAACGAGTCAAGAAAATTTGAGGACGAAAGCGGCGCAGATACAGCGGTG
GGGCAGCGGGCGGTGGGTAGAGAGGACGCCAAACCCGGGGCGATTCCAGG
CACCGGTTCGTCAGATTCTTCGGACAATGATGGCTCTTCTCGAGGTGGTA
CTGCTGACCAAGGTGCGGAGGTACTGCAAAATGGAGACAAACGGGATCCA
GCCGCGAATGGCCGATGTAAGGGCGATGGTGAAGTATCCCCTCCCAACGG
GAAACGCGAGAATCGATTCCCTGCGAAACAACGGCCGAGCGAGGCAACGC
TCGCAGATGAGGATAGCGCAAACAACCAAGCGCAAGCTGATAATCCGCCG
CGCGAAGAGAACGGAACCACTCATATCGACAGCACAATTCATGAAGATGC
CCAGAACATGATGACTCGACAGACGGGCATTAGCCCAGGAAATGCCCCCG
TGCCAATAAAGTTGCCGGCGAAAAAGGGTATGGACGTAGACTTCGGCGAT
GACTCCGGTAGCTCTGACGACGAAAATGGAGCCGAGGCTGCCCAGAGTAA
GGGAGCAGCGCACCTTGGACAGGCTATGGATGGAGAACGCGATTCCCCAA
TTCTCGCCCGCGGTACCACTGGCACACATGTCTCTTCTACCGGTGCGCGA
ACGCGACAAGCAAAACCATTTGATGACCCCGCTGACGATAGTCCGGGTTT
TCCTGGAACGCCGGAAGCTGATGACTTTGCGCAAGTGCAATCGACGGCAG
CTGCTCAAACCCCGCCCAGAAAGCAGCATCAACCGGGAGATACAGCGGGC
GATAATAAAGACGGTGCTCCGAAGGCAGAAGGTAGCCCGAATCCATCGCT
CTCGTCAATGGGACTGGTCGATACCCCTCCGCCTGCCCCCCCAGCCCCGT
CATCTACATCGGGAACAGGGGGCTCGACCAGGAGAAAGACGACCCGAAAA
TCGCCTACGCCGCGGAAAGGATCAGATGTGCTAGCATCGACTGGTGGTGA
GTGCTCTGTCAACCAGAGCGCCACGTCACCTGCAGCCAGTGAACTCAAGG
GGGGAAAATGGGCGTGCACAAGGTGTACGTTGGTAAACAGGGCGAGGGTA
AAAGTCTGCGATGCATGTGCCATGGCGAAGCCGACGGTTTCGGCAGGCGC
AAGTTGCAGTGCAACGAGTATAGGATCAAGTAGTAGCCGTGGTTCGAACC
CTCGCAAGCGTAAGGCGGCGTCGGACCATCCGTCTGGAGATGATGGTCAA
AGTGGCACGGAGGGCGACGCGAAGAGGGGTGGGTTGGGTGATCTGGGTGA
TGGAACGCAGGGTGATTGTGAGGCACGTAGCCGAGAAGCGACCAAAAAAA
GTCGTGCCGCAGCAAAATCGGCTGGTGGTGATGACGATGGACGGGAGACG
GGAAGCGGGGGTGATGAAGGCGGTCGTTCTCGCAGGTTTGTATCGACGTC
GACAACGAAGAACCAAAAAAATGACGTGGAGGTTCTCGAGGGACTGAACG
GATTTGTCGGTGATATAGGCGCGATGACTTTTGACGCCGACGATTTTGGT
TGTGGTTCGGACGACTGCGATGATGACGACGGCGAGCGTTTTGACGAAGA
TGATGATGAGGATTGGAAAGAAGACGGAGGCGAGGACGACGATGATGACG
TTGAGGCTGGGGAAGGAGAACGAGACTCAGAAATAATCGGGTCGCAGATT
GAAAAACAGCTAAAAAGGGTGCTGCAACAGGACTGCGGTCGAGACAACCG
TTCGTCGCCGGGAGCGGGACCCTCGCGCGAAAAGCGGAAGCGCCAAGCTC
CGCCGGTAGCGGGAGAGGTCCTTGATCTCACTGAGGCTGCAGAAGACTCT
CCAGACGAGCTAAGCGGCTACGGAAAAAGCCGTCGAGACGGCGCCGGACG
GCCATACGGCGATGACCCACTCAATAACCCCCGTTATATCGTCGAAGATA
TCTCCGATGATGACGATGCCACGGTCAATCCAGGCTTCGGGGGCTATTGG
AATCCCAAGGCGGCAGGGGGCGGTGCGGGC
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