mRNA_H-paniculata_contig16689.3776.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16689.3776.1
Unique NamemRNA_H-paniculata_contig16689.3776.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A0A3R7QIZ4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7QIZ4_PENVA)

HSP 1 Score: 234 bits (596), Expect = 9.930e-77
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 1 
Query:    4 RQGSYQANRTQVYRRQGPPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            R GSYQA+  QVYRRQGP RKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLV EIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   36 RNGSYQADCPQVYRRQGP-RKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 172
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BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: K0S5H6_THAOC (Histone domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5H6_THAOC)

HSP 1 Score: 229 bits (584), Expect = 5.650e-75
Identity = 126/139 (90.65%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    1 RRQGSYQANRTQVYRRQGPPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            R+ G  +A+R QV+RR+GP RKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST LLIRKLPFQRLV EIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   30 RQNGPNKADRPQVHRRKGP-RKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 167
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BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.870e-73
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLV EIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   17 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.520e-72
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST LLIRKLPFQRLV EIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   31 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 221 bits (564), Expect = 2.750e-72
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLV EIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   23 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 3.200e-72
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLV EIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   17 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A0A3B1JVK5_ASTMX (Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A3B1JVK5_ASTMX)

HSP 1 Score: 220 bits (560), Expect = 1.120e-71
Identity = 118/130 (90.77%), Postives = 123/130 (94.62%), Query Frame = 1 
Query:   28 RTQVYRRQGPPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            R QV+R    PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLV EIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   13 RPQVHRLAKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 219 bits (557), Expect = 2.630e-71
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRL+ EIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   17 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 219 bits (557), Expect = 2.630e-71
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST LLIRKLPFQRLV EIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   17 PRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 218 bits (555), Expect = 5.300e-71
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:   58 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKST+LLIRKLPFQRLV EIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   17 PRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16689.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R7QIZ4_PENVA9.930e-7792.03Histone domain-containing protein n=1 Tax=Penaeus ... [more]
K0S5H6_THAOC5.650e-7590.65Histone domain-containing protein n=1 Tax=Thalassi... [more]
W4GZ05_9STRA7.870e-7398.33Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A7S1BJN3_9STRA2.520e-7298.33Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A6V1P6C6_HETAK2.750e-7297.50Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
D7G4I9_ECTSI3.200e-7297.50Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A3B1JVK5_ASTMX1.120e-7190.77Histone H3 n=2 Tax=Euteleostomi TaxID=117571 RepID... [more]
A7RJG4_NEMVE2.630e-7195.83Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A1Z5K8H0_FISSO2.630e-7196.67Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
E1ZFV1_CHLVA5.300e-7195.83Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16689contigH-paniculata_contig16689:3871..4290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue6.4e-59
Seed eggNOG ortholog159749.K0S5H6
KEGG koko:K11253,ko:K11254
KEGG Pathwayko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.2186215-CDS-H-paniculata_contig16689:3870..42901622929323.2186215-CDS-H-paniculata_contig16689:3870..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16689 3871..4290 +
1691480815.5758371-CDS-H-paniculata_contig16689:3870..42901691480815.5758371-CDS-H-paniculata_contig16689:3870..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16689 3871..4290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16689.3776.1prot_H-paniculata_contig16689.3776.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16689 3871..4290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16689.3776.1

>prot_H-paniculata_contig16689.3776.1 ID=prot_H-paniculata_contig16689.3776.1|Name=mRNA_H-paniculata_contig16689.3776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
RRQGSYQANRTQVYRRQGPPRKQLATKAARKSAPATGGVKKPHRYRPGTV
ALREIRRYQKSTKLLIRKLPFQRLVCEIAQDFKTDLRFQGSAVLALQEAA
EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-paniculata_contig16689:3871..4290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16689.3776.1 ID=mRNA_H-paniculata_contig16689.3776.1|Name=mRNA_H-paniculata_contig16689.3776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig16689:3871..4290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGCAGGGCTCGTACCAAGCAAACCGCACGCAAGTCTACCGGAGGCA
AGGCCCCCCCCGCAAGCAGCTAGCCACCAAGGCTGCACGCAAGTCCGCGC
CAGCTACCGGCGGTGTGAAGAAGCCCCACCGATACAGGCCGGGTACCGTA
GCCCTGCGTGAGATTCGGCGCTACCAAAAGTCGACAAAGTTGCTTATCCG
CAAGCTGCCGTTCCAGCGCCTTGTGTGCGAGATCGCACAAGACTTCAAGA
CCGACCTCCGCTTTCAAGGCTCCGCCGTGCTTGCCCTACAGGAGGCGGCT
GAGGCTTACTTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCA
CGCGAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCCCGGCGCA
TCCGCGGCGAACGATCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16689:3871..4290+

>mRNA_H-paniculata_contig16689.3776.1 ID=mRNA_H-paniculata_contig16689.3776.1|Name=mRNA_H-paniculata_contig16689.3776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig16689:3871..4290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGGCAGGGCTCGTACCAAGCAAACCGCACGCAAGTCTACCGGAGGCA
AGGCCCCCCCCGCAAGCAGCTAGCCACCAAGGCTGCACGCAAGTCCGCGC
CAGCTACCGGCGGTGTGAAGAAGCCCCACCGATACAGGCCGGGTACCGTA
GCCCTGCGTGAGATTCGGCGCTACCAAAAGTCGACAAAGTTGCTTATCCG
CAAGCTGCCGTTCCAGCGCCTTGTGTGCGAGATCGCACAAGACTTCAAGA
CCGACCTCCGCTTTCAAGGCTCCGCCGTGCTTGCCCTACAGGAGGCGGCT
GAGGCTTACTTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCA
CGCGAAGCGCGTGACAATCATGCCTAAGGACATCCAGTTGGCCCGGCGCA
TCCGCGGCGAACGATCATAACGGCGGCAGGGCTCGTACCAAGCAAACCGC
ACGCAAGTCTACCGGAGGCAAGGCCCCCCCCGCAAGCAGCTAGCCACCAA
GGCTGCACGCAAGTCCGCGCCAGCTACCGGCGGTGTGAAGAAGCCCCACC
GATACAGGCCGGGTACCGTAGCCCTGCGTGAGATTCGGCGCTACCAAAAG
TCGACAAAGTTGCTTATCCGCAAGCTGCCGTTCCAGCGCCTTGTGTGCGA
GATCGCACAAGACTTCAAGACCGACCTCCGCTTTCAAGGCTCCGCCGTGC
TTGCCCTACAGGAGGCGGCTGAGGCTTACTTGGTGGGTCTGTTCGAGGAC
ACGAACTTGTGCGCCATCCACGCGAAGCGCGTGACAATCATGCCTAAGGA
CATCCAGTTGGCCCGGCGCATCCGCGGCGAACGATCATAA
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