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Homology
BLAST of mRNA_H-paniculata_contig1058.378.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI) HSP 1 Score: 250 bits (639), Expect = 5.230e-79 Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 3
Query: 309 MGVQKLLGSILLIVVTATYILPASLRIVFGPKLPP--YLGTIIAASIGIPVVLFAGFEMWKNLQANRQARKVRQQQEAIDQQTYGCIQPQVLNSFVVFPVRVNKRGCVASSWVEIGEQGVVANLCAAVKVTGVADTEGPLRRLCEATFRQDLEVIVYCGGGKAGPTGLAVGVGREGFGPFLASVVGHSIKDAIRLGTKG 899
MG KLLG + L+ T Y+LP S+ + FG +PP Y G +A IG+P++ F FEMWK L NR+ RK R++ E I+ Q++GCI+PQVL+SFVVFPVRV+KRGC SSWVE+GEQ V NLCAA K++G DTEGPLRRLCEATF +L+VIVYCGGG AGPTGLAVGVGR+ FGP+LAS V HSIK+A+RLG +G
Sbjct: 1 MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFG--MAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQG 197
BLAST of mRNA_H-paniculata_contig1058.378.1 vs. uniprot
Match: A0A7S2V258_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.680e-23 Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = 3
Query: 426 IIAASIGIPVVLFAGFEMWKNLQANRQARKVRQQQEAIDQQTYGCIQPQVLNSFVVFPVRVNKRGCVASSWVEIGEQGVVANLCAAVKVTGVADTEGPLRRLCEATFRQDLEVIVYCGGGKAGPTGLAVGVGREGFGPFLASVVGHSIKDAIRLGTK 896
I A + G VV ++K+L+ R+ R+ + E++++QTY CI QVL+S VVFPV+V +R S + IGE+ V V+++ D L+ LC D V V+ G GK+GPTGLAVG+ REG+GP LA+ VG +I+ +I+ TK
Sbjct: 65 IFAGAFGAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFVQ------VELSQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVREGYGPSLANHVGMAIEQSIQKHTK 215
BLAST of mRNA_H-paniculata_contig1058.378.1 vs. uniprot
Match: A0A7S4EDG4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDG4_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-6 Identity = 54/156 (34.62%), Postives = 71/156 (45.51%), Query Frame = 3
Query: 435 ASIGIPVVLFAGFEMWKNLQANRQARKVRQQQEAIDQQTYGCIQPQVLNSFVVFPVRVNKRGCVASSWVEIGEQGVVANLCAAVK-VTGVADTEGPLRRLCEATFRQDL-----EVIVYCGGGKAGPTGLAVGVG-REGFGPF-LASVVGHSIKDA 878
A + + L F ++ + +R + Q Q AI QT+ C+ PQ FVVFPVRV +RG AS V + + L + G DTE LR L EA EV+ + G GPTGLA G+ R G F L VG + DA
Sbjct: 118 AVVAVVCGLILLFSYARDRRRDRARTRGAQSQRAIKSQTFQCVAPQTPGEFVVFPVRVARRGVAASRVVSLDGDELRVELDTKQRDAAGRLDTEASLRSLLEAALLPRFPTGAAEVVTFYG---EGPTGLAGGLALRRGAPDFALGRKVGCYLMDA 270
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_008700.1 |
| Exons | 6 |
| Model size | 1167 |
| Cds size | 597 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1058.378.1 >prot_H-paniculata_contig1058.378.1 ID=prot_H-paniculata_contig1058.378.1|Name=mRNA_H-paniculata_contig1058.378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MGVQKLLGSILLIVVTATYILPASLRIVFGPKLPPYLGTIIAASIGIPVV
LFAGFEMWKNLQANRQARKVRQQQEAIDQQTYGCIQPQVLNSFVVFPVRV
NKRGCVASSWVEIGEQGVVANLCAAVKVTGVADTEGPLRRLCEATFRQDL
EVIVYCGGGKAGPTGLAVGVGREGFGPFLASVVGHSIKDAIRLGTKGF* back to topmRNA from alignment at H-paniculata_contig1058:2620..6894+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1058.378.1 ID=mRNA_H-paniculata_contig1058.378.1|Name=mRNA_H-paniculata_contig1058.378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4275bp|location=Sequence derived from alignment at H-paniculata_contig1058:2620..6894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATCGTGAAGGGCTGAGGACGAAATACTCAGGTGGTGCGGTTGCAGAG
CAATCGACACCGACAGCCGACAGCGAGGCGATCGTCGTTCAACTTTGCCA
TAGCTATTAGAAAGAGTGGGTAATAGCGGTGCAGGACCTTTGGTGCCTAA
CGGCAGCCAACTTCTGAATACCCAAAATAGTACAGTTCCGATAGATATTG
CGCCCACAGATAAAGTAGTAACGTTGGGCAGAGTCTCAGGCTTCGACACC
AACTGCCTGTCGGCGTATCGGCGCTCTACTCGGTGCAGCGAATCGTCTTG
CTGTCAGTATGGGGGTGCAAAAGTTACTAGGGAGCATTCTGCTAATCGTA
GTCACGGCTACGTACATCCTTCCGGCATCACTCAGAATAGTGAGTACAGG
GACGTCCGCAAACTGAAAATGTACTTGCACCAACCCGCCAAGTGCATACA
TGACATCAACCTCTTAGTATAGGGACTGTCGTGGAAGCAATCTGCCTCTC
AGGATTACATGCAGCTTGTTCACAGTAGTAAATGAACTTAATAGTGAGAT
GAACTATACAAGAGGATATGGGTCTGGCAAGCGCAGATTTTTGATCGAGG
AGATTATGGTGGTTTGTGTGCTGTAGAAGCGAACTGTCCGCAACTTGCCG
CAACAACTATGCAGACACTACAAGTACATACATGCAAGACTATACGTAGA
GGGTAGCATATGTCGTCTGGAGTTTGATGCAGCTAAAGGGTGCAAAACTG
GACTTGACTGCATGGAATAGAAAACTTTGCTATTTTTCTTCGAAATATTA
CCGCCCTTCCCCATACATCGTTTCGCCCTCAACAAGCTTATACGAGTACA
GTGTACTTCAATCTACGTCTCTTTTCCCGACCGGCTTCTTGGTTCTCGAA
TGCAGGTTTTTGGACCGAAGTTGCCGCCGTACCTCGGTACAATCATAGCT
GCGTCTATCGGCATCCCTGTCGTGCTTTTTGCGGGTTTTGAAATGTGGAA
GAATTTGCAAGCCAATCGACAGGCGAGGAAAGTAAGGCAGCAGCAAGAGG
CTATAGACCAGGTACGAGTTCACTACAGCCGGAACGCATTGAGGGTTTGG
AGGGTTGCAGGGAAATCGTTTGCAGCAGGGTTTAGTTTGGAGTTACACAA
ATAGCCAGCTGCAGTGGCGTAGATTTGCAACAGTAGGCACAGCCGCAGTA
TTCAGTGAATGTAAAAGTCAATCAGTGAAGAATACCATGGTGAGGTGCTA
GGTTATGCTATCGGGTACGGTTCGGTCCGCTCCTTCACTGATTTCTTGAT
GGATCCGTTCTCAAACTCTACCCCGTGTGATGGTTGGAGAAGTGATGCCA
CTAATTGCCGCCGTCATTCGCAGTTTTGCGGTTATCTTCGGACTCGCCAC
CTTTTGGTGATTTTCGAACAGCTGTACGTCACCAGCTGATTTGATGACTT
GACACCACCGACATCGCTATCAATCATTCCGCGTCTCGGCAGCAAACCTA
CGGCTGCATCCAGCCGCAAGTGCTGAACTCGTTCGTCGTTTTCCCCGTCA
GGGTAAACAAGTGAGTGATCCGTTTTCGGAGGCGCACCGCAACGTTTCAG
TTTGTCTCAATCTGCCGTGATATTTACGGTATCACAATCGCAGGTATTTA
TGCTATCTTCGGGTATGTAGGGATACAACATCTGGTCTCGTCATCAAGCT
GCTGATTTTGTGGTGGCGACAATACCATTTGAATTTGAACGGGGGTTGGG
GAATGTCGGTAACCGCTCGTAGGTTGGCTATCTTCCTGATTACGGACTTG
TGTGCCTTCACGCATGGAGCGCGATACATGAAATGGATAATATCATAAGT
ATTCTTGTCGGCTCACTTTCCCCCTCAACCGCCAAATGGATATCGCAGAC
GAGGCTGCGTAGCATCGTCGTGGGTGGAGATAGGAGAGCAAGGTGTCGTG
GCCAACCTTTGTGCGGCCGTGAAAGTCACCGGGGTTGCCGACACAGAGGG
CCCACTGCGAAGGCTGTGCGGTAAGCTGGATAACCAGCGGGTGGTGCTGA
GCTATTTCAACAATCCTTCGTTTCAGTTTCAGTCGCTCGTTTTATGACGA
GCGAGAGTCGCGCCCCTTCTTTCTTCGATTCAATGTTCAAAGCTGTCGGG
GGAGCTGGTGGCCTCGGGATGCTGTGGGTTTTTCCTGTGTGAGGTGGCAT
CCGTAGCCCAAAATACTCGAGCGCGATGTGAAAAAGTTCCTCTAGATATG
TATCGTATTACGTTTTTGGCTGCCCAAACTCGGTGAACGTCACATGTCGA
AGACAACCTTCGCGTTGGCCTATTTCGACCCTGCCCGTACGGCGTTGGAT
TTCCGTAGTCGTAGTGCTTGAAATAACACCATTCAGACTATCTTGCTTTT
CCCTCGACATGTCCTTGTACGTCCTCCGTCCCATAGGTACACTCGATTAC
GTGGTGAAAGAGATTGACGACATCCTATTTGACACCTGTATTTTTTTATC
AGAATGCTACACGTTTTGGTGGTTGCAACTTATTTTGAGGGTCAAATTGT
TGTCGTTTAACACCAAAGAATATGCCGAGAAAAAGGTACTCAATGAATCG
CAAACAGTAAGACCCTTCCTACTATGTCATGTTCAAGGCCCCGTATCTCC
GAAACTATGTAGCTCCACTGGGCGTGTGTAAGATCAGAGTAAAAACAAAA
CAGAGGAGCCTTCTGCAGATTATTCTGACTTACGATTTTGAAAATGTGCG
AATTCAAATTTAGCAAAGACTTTGCTGATTGCCTTCATACGGAGAGTTTT
TGTTTTTAGGCACAACCATGATCTGTTTTCGGCCGAGTTTTTTGTTACAG
CGTGTGTGTTGTTATTAAACGGCAACTGTTTGATCCACAATTTGAGGCTC
AACTCCCAAAACGTCTAGGAGGATATGATCCATGTCTTTTACAAACGTGA
TAGAGTACAGATTTGGGACGGAGGAAGTACGAGAATTCGCGCATCAACTA
CGGACGGATGAGCTCTTGACCGCTTTCCCTTATCCCACCGGCGCCCTGCC
GTACGCTTGACCCGTGCCCCATTCCATCGGACCCACCGTAGAGGCGACGT
TTCGGCAAGATCTAGAAGTCATTGTCTATTGCGGGGGGGGCAAAGCTGGA
CCAACGGGGCTAGCTGTGGGTGTGGGACGTGAGGGTGAGTGAGAGACGAG
CATGCAACATGTGGCTACATAGTGGTAGAGGCTAAATCTACGATCACGCT
CACGACCGTTCTTTGCGTTAGTTCTATAGCGGATTTTAACTAGCGAAACG
GATTGCCACTACAGGGATTCTTGGGAATCCAAAAATTGTTTCAAAGTTTT
ACGCTTTCCTTATTCAAGGTGTTACAGGGGGGCTGATGAAACGTGGCAAT
TAACTCCGCACCTCTACCTTTCGGAGGGTAGTCCTAAATACTGATGCAAT
CAGGAAATATCCGATGTGCAAGCCGCCCTGGTGTAGCTCGTGGTCAAGGT
GCCTATGTGTTTCCAATTCTCTCGGATCCGGCGTCTACGCCACCCCTCGA
GGTGTCTTTTCCATCATCAGTGCATTATTTCTCAGTTCCCCGCTCTGCTG
GCATCATTTGTTCTTCAGAAATGTACCACAACCTTCCGTTTTGCCTAGCT
GTACTCGCTCGAAGTACAGTCGTCAATGGTTTCTGGCTTCGTTGTAACCT
CTGATTCGTCGCTCGCTTGAGACCTTCACTGCAGGAGCTATGCTACATAG
TAAAACAGTAAAACGAGTGTTCAACTATGGATACGGACCAAAATTGGAAC
AAGTCACGCGTTACAGTAGGGGTTATCGATGCCACCATGCTAGAGGTTTC
TTCTTTCCCGATTTACTTTGTTGTTGTTGGCCAAATACCGTTTGACCCGT
TTTGCTCGATCGGTGTGTTGTCGGCCTCAATGTCAGGATTCGGACCTTTT
CTGGCGAGCGTCGTGGGGCACTCGATAAAAGACGCCATCAGGCTCGGGAC
CAAGGGATTCTGAAAATTGCGCACGTAGCCGTGATTCTATTAAGAATCAT
TCCCAGGAAATATTCCTGGGACATTTTGACTACGAACAAAAGTACTATTG
TTTACCACTGTTTGTTGAGGTACAAATATGCTCATGCGCGTAGAATTGTG
TTCTTTGTGCGCTCCACACGCTAGGTAAATAATCACAACATGTATACATC
AGTTGGAAAGTTTCCATAAAATATGTACATTCAGTGGATATGACCATAAC
AAGGCTGATGGGCAGAAACATGCGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1058:2620..6894+ >mRNA_H-paniculata_contig1058.378.1 ID=mRNA_H-paniculata_contig1058.378.1|Name=mRNA_H-paniculata_contig1058.378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig1058:2620..6894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGTGCAAAAGTTACTAGGGAGCATTCTGCTAATCGTAGTCACGGC
TACGTACATCCTTCCGGCATCACTCAGAATAATGGGGGTGCAAAAGTTAC
TAGGGAGCATTCTGCTAATCGTAGTCACGGCTACGTACATCCTTCCGGCA
TCACTCAGAATAGTTTTTGGACCGAAGTTGCCGCCGTACCTCGGTACAAT
CATAGCTGCGTCTATCGGCATCCCTGTCGTGCTTTTTGCGGGTTTTGAAA
TGTGGAAGAATTTGCAAGCCAATCGACAGGCGAGGAAAGTAAGGCAGCAG
CAAGAGGCTATAGACCAGGTTTTTGGACCGAAGTTGCCGCCGTACCTCGG
TACAATCATAGCTGCGTCTATCGGCATCCCTGTCGTGCTTTTTGCGGGTT
TTGAAATGTGGAAGAATTTGCAAGCCAATCGACAGGCGAGGAAAGTAAGG
CAGCAGCAAGAGGCTATAGACCAGCAAACCTACGGCTGCATCCAGCCGCA
AGTGCTGAACTCGTTCGTCGTTTTCCCCGTCAGGGTAAACAACAAACCTA
CGGCTGCATCCAGCCGCAAGTGCTGAACTCGTTCGTCGTTTTCCCCGTCA
GGGTAAACAAACGAGGCTGCGTAGCATCGTCGTGGGTGGAGATAGGAGAG
CAAGGTGTCGTGGCCAACCTTTGTGCGGCCGTGAAAGTCACCGGGGTTGC
CGACACAGAGGGCCCACTGCGAAGGCTGTGCGACGAGGCTGCGTAGCATC
GTCGTGGGTGGAGATAGGAGAGCAAGGTGTCGTGGCCAACCTTTGTGCGG
CCGTGAAAGTCACCGGGGTTGCCGACACAGAGGGCCCACTGCGAAGGCTG
TGCGAGGCGACGTTTCGGCAAGATCTAGAAGTCATTGTCTATTGCGGGGG
GGGCAAAGCTGGACCAACGGGGCTAGCTGTGGGTGTGGGACGTGAGGAGG
CGACGTTTCGGCAAGATCTAGAAGTCATTGTCTATTGCGGGGGGGGCAAA
GCTGGACCAACGGGGCTAGCTGTGGGTGTGGGACGTGAGGGATTCGGACC
TTTTCTGGCGAGCGTCGTGGGGCACTCGATAAAAGACGCCATCAGGCTCG
GGACCAAGGGATTCTGAGATTCGGACCTTTTCTGGCGAGCGTCGTGGGGC
ACTCGATAAAAGACGCCATCAGGCTCGGGACCAAGGGATTCTGA back to top
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