mRNA_H-paniculata_contig16688.3775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16688.3775.1
Unique NamemRNA_H-paniculata_contig16688.3775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: H6BDQ1_LOLPR (Peptidylprolyl isomerase (Fragment) n=1 Tax=Lolium perenne TaxID=4522 RepID=H6BDQ1_LOLPR)

HSP 1 Score: 81.3 bits (199), Expect = 2.800e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            QEPF++NIG+GKVIKGWDEGV+ M +GE ++LTCTPDYAYGA G
Sbjct:    6 QEPFAFNIGLGKVIKGWDEGVLSMQLGEVARLTCTPDYAYGAGG 49
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: UPI001F5DD5E2 (peptidyl-prolyl cis-trans isomerase FKBP12-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DD5E2)

HSP 1 Score: 81.3 bits (199), Expect = 8.360e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            QEPF++NIG+GKVIKGWDEGV+ M +GE ++LTCTPDYAYGA G
Sbjct:   47 QEPFAFNIGLGKVIKGWDEGVLSMQLGEVARLTCTPDYAYGAGG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A7C9D820_OPUST (Peptidylprolyl isomerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D820_OPUST)

HSP 1 Score: 80.5 bits (197), Expect = 1.680e-18
Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            QEPFS+N+G+GKVIKGWDEGV+ M VGE ++LTC+PDYAYG++G
Sbjct:   47 QEPFSFNVGLGKVIKGWDEGVLGMQVGEVARLTCSPDYAYGSSG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A0K9P660_ZOSMR (Peptidylprolyl isomerase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P660_ZOSMR)

HSP 1 Score: 79.0 bits (193), Expect = 6.810e-18
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            Q+PF++N+GMG VIKGWDEGV+DM +GE ++L CTPDYAYGA+G
Sbjct:   47 QQPFTFNVGMGTVIKGWDEGVLDMNIGEIARLECTPDYAYGASG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A8J5T8P1_ZIZPA (PPIase FKBP-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5T8P1_ZIZPA)

HSP 1 Score: 79.0 bits (193), Expect = 6.810e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            QEPFS+NIG G VIKGWDEGVM M VGE +++ CTPDYAYGA+G
Sbjct:   47 QEPFSFNIGQGSVIKGWDEGVMTMQVGEVARIQCTPDYAYGASG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: UPI001C4CA8DA (peptidyl-prolyl cis-trans isomerase FKBP12-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4CA8DA)

HSP 1 Score: 79.0 bits (193), Expect = 6.810e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            Q+PF++NIG+G VIKGWDEGVMDM VGE + L CTPDYAYGA G
Sbjct:   47 QQPFTFNIGLGSVIKGWDEGVMDMKVGEVALLQCTPDYAYGAGG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A6H5JKH1_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.180e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            Q PFSY+IG+G VIKGWD+GVMDM VGE ++LTCTPDYAYG  G
Sbjct:   49 QVPFSYHIGLGSVIKGWDQGVMDMGVGERARLTCTPDYAYGEGG 92
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A022RFZ9_ERYGU (Peptidylprolyl isomerase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RFZ9_ERYGU)

HSP 1 Score: 78.6 bits (192), Expect = 9.670e-18
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            QEPFS+ +GMGKVIKGWDEGV+ M VGE ++LTC+PDYAYG  G
Sbjct:   47 QEPFSFQVGMGKVIKGWDEGVLGMQVGEVARLTCSPDYAYGTGG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: Q2VY16_SOLLC (Peptidylprolyl isomerase n=12 Tax=Solanaceae TaxID=4070 RepID=Q2VY16_SOLLC)

HSP 1 Score: 77.8 bits (190), Expect = 1.950e-17
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            Q+PFS+ IG GKVIKGWDEGV+ M +GE ++LTCTPDYAYGA G
Sbjct:   47 QQPFSFKIGQGKVIKGWDEGVLGMQLGEVARLTCTPDYAYGAGG 90
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BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Match: A0A3B6PP75_WHEAT (Peptidylprolyl isomerase n=4 Tax=Triticinae TaxID=1648030 RepID=A0A3B6PP75_WHEAT)

HSP 1 Score: 78.6 bits (192), Expect = 2.320e-17
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYNIGMGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG 132
            Q+PFS+NIG+G VIKGWDEGVM M +GE ++LTCTPDYAYG  G
Sbjct:   82 QQPFSFNIGLGSVIKGWDEGVMGMQLGEVARLTCTPDYAYGTGG 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16688.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6BDQ1_LOLPR2.800e-1975.00Peptidylprolyl isomerase (Fragment) n=1 Tax=Lolium... [more]
UPI001F5DD5E28.360e-1975.00peptidyl-prolyl cis-trans isomerase FKBP12-like n=... [more]
A0A7C9D820_OPUST1.680e-1872.73Peptidylprolyl isomerase n=1 Tax=Opuntia streptaca... [more]
A0A0K9P660_ZOSMR6.810e-1870.45Peptidylprolyl isomerase n=1 Tax=Zostera marina Ta... [more]
A0A8J5T8P1_ZIZPA6.810e-1875.00PPIase FKBP-type domain-containing protein n=1 Tax... [more]
UPI001C4CA8DA6.810e-1875.00peptidyl-prolyl cis-trans isomerase FKBP12-like n=... [more]
A0A6H5JKH1_9PHAE7.180e-1875.00Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A022RFZ9_ERYGU9.670e-1872.73Peptidylprolyl isomerase n=1 Tax=Erythranthe gutta... [more]
Q2VY16_SOLLC1.950e-1772.73Peptidylprolyl isomerase n=12 Tax=Solanaceae TaxID... [more]
A0A3B6PP75_WHEAT2.320e-1772.73Peptidylprolyl isomerase n=4 Tax=Triticinae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16688contigH-paniculata_contig16688:4665..4799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue1e-08
Seed eggNOG ortholog4096.XP_009771146.1
Preferred nameFKBP12
KEGG koko:K01802
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase
EggNOG OGs37VEG@33090,3GINI@35493,44KB6@71274,COG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size135
Cds size108
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.148679-CDS-H-paniculata_contig16688:4664..47721622929323.148679-CDS-H-paniculata_contig16688:4664..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16688 4665..4772 -
1691480815.5559402-CDS-H-paniculata_contig16688:4664..47721691480815.5559402-CDS-H-paniculata_contig16688:4664..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16688 4665..4772 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.169733-UTR-H-paniculata_contig16688:4772..47991622929323.169733-UTR-H-paniculata_contig16688:4772..4799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16688 4773..4799 -
1691480815.5666728-UTR-H-paniculata_contig16688:4772..47991691480815.5666728-UTR-H-paniculata_contig16688:4772..4799Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16688 4773..4799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16688.3775.1prot_H-paniculata_contig16688.3775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16688 4665..4772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16688.3775.1

>prot_H-paniculata_contig16688.3775.1 ID=prot_H-paniculata_contig16688.3775.1|Name=mRNA_H-paniculata_contig16688.3775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
MGKVIKGWDEGVMDMAVGETSKLTCTPDYAYGAAG*
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mRNA from alignment at H-paniculata_contig16688:4665..4799-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16688.3775.1 ID=mRNA_H-paniculata_contig16688.3775.1|Name=mRNA_H-paniculata_contig16688.3775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig16688:4665..4799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGCCTTTTAGCTACAACATCGGAATGGGAAAAGTTATCAAGGGCTG
GGATGAAGGCGTGATGGACATGGCCGTGGGCGAGACATCCAAGCTGACCT
GCACCCCCGACTACGCCTACGGAGCCGCAGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16688:4665..4799-

>mRNA_H-paniculata_contig16688.3775.1 ID=mRNA_H-paniculata_contig16688.3775.1|Name=mRNA_H-paniculata_contig16688.3775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig16688:4665..4799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAAGTTATCAAGGGCTGGGATGAAGGCGTGATGGACATGGCCGT
GGGCGAGACATCCAAGCTGACCTGCACCCCCGACTACGCCTACGGAGCCG
CAGGGTAAATGGGAAAAGTTATCAAGGGCTGGGATGAAGGCGTGATGGAC
ATGGCCGTGGGCGAGACATCCAAGCTGACCTGCACCCCCGACTACGCCTA
CGGAGCCGCAGGGTAA
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