mRNA_H-paniculata_contig1666.3760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1666.3760.1
Unique NamemRNA_H-paniculata_contig1666.3760.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: D7FQL2_ECTSI (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQL2_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.400e-86
Identity = 142/222 (63.96%), Postives = 170/222 (76.58%), Query Frame = 1 
Query:  337 IGDEG--YRERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSG--VSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFRRVAD 990
            +G +G   RE+K ++R+RIK+ LK M   AV   SA V ERLL  PQL +    + G  VSVYLSMP EL T A+V  LFKRGKKVYIPKV+G  SADMRMFP+ S++E +SFPLTKWKI EP E+LV SREDG   GDI +++VPA+A D  CNRLGHGRG+YDCFFERVNK++ DKGRP P+T+GVCFDEQVVD +PT  +DV LDFV TPTRTFRR A+
Sbjct:   25 VGGKGKDVREQKKALRKRIKSELKQMSDEAVGVASAAVAERLLSFPQLQQQEGGDGGGAVSVYLSMPKELGTSAIVSGLFKRGKKVYIPKVLGAASADMRMFPVRSEEEVASFPLTKWKISEPSEELVFSREDGVTEGDISVIIVPAVALDPTCNRLGHGRGHYDCFFERVNKASMDKGRPPPVTIGVCFDEQVVDCIPTESTDVRLDFVLTPTRTFRRDAE 246
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A835ZF18_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF18_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.500e-58
Identity = 104/204 (50.98%), Postives = 136/204 (66.67%), Query Frame = 1 
Query:  364 KASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTF 975
            KA++R  IK AL  ++K A+ A S  ++  L   P  ++ S     VS YLSMP E  T  ++  LF  GK+VY+PKV+GP  +DMRM+ +ES  +  SFPLTKW IPEP  + VL+ EDGT  GDIDLV++P  AFDARCNRLGHG+GYYD F +R   +   +G P P+T+G+C +EQVV  VP +  DVPLDFV TP + F
Sbjct:   14 KAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSV----VSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 213
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A0G4F0S7_VITBC (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0S7_VITBC)

HSP 1 Score: 162 bits (409), Expect = 4.390e-42
Identity = 89/209 (42.58%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:  358 ERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMP-GELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVD--EVPTSLSDVPLDFVFTPTRTF 975
            E+K ++R++++  LK +   +++  SA V  +L   P       ++  V VYLSMP GE+ T  LV E F++GK+V++P+V+G    DMRM  + S  E SSFP++ W IPE   D  L REDGT+ GDIDLV+ P +AFD    RLGHG+GYYDCF  R+  S  D+GRP   T+G+   EQ++    +P    D+ LD+V TP   +
Sbjct:   31 EQKKALRRQVRGQLKSLSHESIEPQSAAVFAQLSQHPTFV----RSQCVCVYLSMPSGEIDTHTLVREAFRQGKRVFVPRVVGKNPPDMRMVEVSSVDEISSFPMSPWGIPELSLDETLRREDGTYCGDIDLVICPGVAFDQSGRRLGHGKGYYDCFLARLFASLKDRGRPRTTTIGIGLREQLLPLATIPMDSLDMFLDWVVTPDGVY 235
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A067D9P6_SAPPC (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9P6_SAPPC)

HSP 1 Score: 160 bits (405), Expect = 5.560e-42
Identity = 92/215 (42.79%), Postives = 122/215 (56.74%), Query Frame = 1 
Query:  355 RERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSRE--DGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFRRVADK 993
            R +KA +R+ I   L+ + +  V A S  + + ++         +    VSVYL+M  E  T  LV  LF  GK+VY+PKV+G  S DM M  ++S  E ++FP +KW IPEPP  L   R   D   A D+D+V+VP +AFD RCNRLGHG+GYYDCF ER    N  K    P+T+G+  + Q+VD VPTS  D  LD V TP    R  A  
Sbjct:    6 RSQKAVLRKHIAGLLRALSRDEVVAQSEALAQHVVALDVFRHARS----VSVYLAMEAEAKTSTLVDALFAAGKRVYVPKVIGAKSEDMVMLRVDSATEMATFPKSKWGIPEPPSSLPSGRPRIDALDALDVDIVLVPGVAFDPRCNRLGHGKGYYDCFLERYASRNGGK---LPVTIGIALEAQIVDAVPTSGHDKMLDMVATPQGILRSSASS 213
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A0G4HSL4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HSL4_9ALVE)

HSP 1 Score: 166 bits (421), Expect = 1.100e-41
Identity = 92/240 (38.33%), Postives = 135/240 (56.25%), Query Frame = 1 
Query:  346 EGYRERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGK--KVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDE--VPTSLSDVPLDFVFTPTRTFRRVADKP*C-VFACIMDLPRTLY*RS 1050
            E  R RK ++R+ +  A+  +    +   S  ++  L    +  + + +  GVSV+LSMP        + + F   K  KV++PKV+G    DM M P+ S  E   FP  KW I EPP+DL+ +R DGT++G+ID+VV P +AFDA  NR GHG+GYYDCF ERV++SN   G+  P+T+ +   EQ+V+E  +P    DVP+D V TP + F R    P C   A  ++ P     +S
Sbjct:   75 ESLRIRKKTLRKNVTEAVTAIPLSRLRRESCAIMHNLQWLAETVDLTKEFKGVSVFLSMPSGELNSWPIFDFFCSNKAHKVFVPKVVGRKPQDMVMVPVSSLSEVLEFPKNKWGISEPPDDLLETRRDGTYSGEIDMVVCPGVAFDAEGNRCGHGKGYYDCFLERVSESNEKMGKRRPVTLALSLQEQLVEEAVIPVDSFDVPMDLVVTPLQIFVRRNSHPLCSTLATALNSPSASTLKS 314
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: W4FG50_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FG50_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.880e-41
Identity = 92/215 (42.79%), Postives = 124/215 (57.67%), Query Frame = 1 
Query:  346 EGYRERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLV--LSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPS-PITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFRR 981
            +G +  K  +R+ I   L+      V + SA +   L+  P       Q   V  YL MP E +T A++ E+F +GKK+Y+PKV GP S DM M  + S ++  +FP +KW IPEP  D    L RE+     D+DL++VP +AFDA CNRLGHG+GYYDCFFER     A K R + P T+G+   EQV+D+VPTS  D  LD + TP     R
Sbjct:   12 DGVKALKQVIRKDIDLKLRQYSADEVASASAQLTSHLVQHPAFV----QAKSVCAYLPMPNEASTAAIIHEIFAQGKKLYVPKVTGPRSEDMVMLHVTSQRDIDTFPKSKWNIPEPLLDHPNGLPRENALDVTDLDLILVPGVAFDAHCNRLGHGKGYYDCFFERY----ASKCRGALPPTLGIALPEQVIDQVPTSAHDKALDGLVTPRGVLSR 218
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A1V9ZFD4_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFD4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.670e-40
Identity = 91/206 (44.17%), Postives = 123/206 (59.71%), Query Frame = 1 
Query:  355 RERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLV--LSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPT 966
            R +K ++R++++ AL+ M   A+ A S  + + ++    +         V VYLSM  E  T  ++ +LF  GKKVY+PKV G  S DM M  ++S+ E +SFP +KW IPEPPE L     R +   A DID+V+VP +AFDA  NRLGHG+GYYDCFF+R    N   G   P T+G+  D Q+V  VPTS  D  LD V TPT
Sbjct:   13 RSQKKALRKQVEGALRAMTPGAIVAQSNALAQHIIALDAIRTAQC----VCVYLSMEHEARTAPILTQLFAAGKKVYVPKVTGMRSEDMVMLQVDSENEMASFPKSKWGIPEPPELLPNGTPRINALDALDIDVVLVPGVAFDAHRNRLGHGKGYYDCFFQRYALRN---GGELPATIGLALDVQMVPAVPTSDHDKVLDMVATPT 211
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: H3HB68_PHYRM (J domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB68_PHYRM)

HSP 1 Score: 159 bits (402), Expect = 1.100e-39
Identity = 84/207 (40.58%), Postives = 123/207 (59.42%), Query Frame = 1 
Query:  364 KASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPP--EDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFR 978
            K  +R+RI A LK +    V   S  + E++   P+ ++  A    VSVYL MP E+AT AL+   F   KKV++PK+ G  + D++M   +S Q+  SFP  KW+IP+PP   D    R+D     +++LV++P +AFD R  RLGHG+GYYDCF  R+ +  A+ G P P T+G+C   Q++++VP +  D  LD V TPT   R
Sbjct:    6 KKELRRRIGAMLKALPDAEVAEQSRRLAEQVCALPEFSQARA----VSVYLEMPKEVATLALLEAAFAANKKVFVPKITGRSAEDLKMLQAQSMQDIRSFPKDKWQIPDPPLLSDSGAPRDDAVQGSELELVLLPGVAFDRRGGRLGHGKGYYDCFLRRLAEHYAEIGHPPPTTIGLCLTPQLLEQVPLAAHDRMLDMVATPTEVIR 208
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A3R7XBT4_9STRA (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XBT4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.170e-39
Identity = 81/207 (39.13%), Postives = 119/207 (57.49%), Query Frame = 1 
Query:  364 KASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKRGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPP--EDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFR 978
            K  +R+RI + L+ +    V   S  ++E++   P+ A       GVSVYL MP E AT  L+   F   KKV++PK+ G  + D++M   +S ++  SFP  KW+IP+PP   D  + R+D     +++LV++P +AFD R  RLGHG+GYYD F  R+ +   D G P P T+G+C   Q+VD+VP +  D  LD V TP    R
Sbjct:   18 KKELRRRIASTLETLPDTEVAEQSQLLIEKVCALPEFARAR----GVSVYLEMPKEAATSKLLEAAFAANKKVFVPKITGRSADDLQMLQTQSMEDIQSFPKDKWQIPDPPLLTDNGVPRDDAVRGDELELVLLPGVAFDRRGGRLGHGKGYYDSFLRRLTEHYDDIGHPPPTTIGLCLTPQLVDKVPLATHDQMLDLVVTPHEVIR 220
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BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Match: A0A4D9D4C9_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4C9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.310e-39
Identity = 90/217 (41.47%), Postives = 126/217 (58.06%), Query Frame = 1 
Query:  358 ERKASMRQRIKAALKGMDKYAVDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPG-ELATEALVVELFK--------RGKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSREDGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPSPITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFRR 981
            E+K  +R+ I A L+ +D   V A ++ +  RLL   +  + +     VS+YLSMP  E+ T   ++E           R + VY+PKV GP   DM M PL S ++ SSFP++KW IPEPP    LS         +DLV+VP +AFD +CNRLGHG+GYYD F  R+  S+A  GR  P+T+G+  +EQ+V  VP    D+PLD V TP + + R
Sbjct:   15 EKKKDLRKSITARLRALDDSYVAAEASRLFPRLLALEEYTDSTC----VSLYLSMPAKEVPTFPDLLEAVMTDGKGAEGRARDVYVPKVTGPAPGDMVMLPLSSPEDVSSFPVSKWGIPEPPLPPSLSPS----LPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVYFR 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1666.3760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQL2_ECTSI1.400e-8663.965-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ecto... [more]
A0A835ZF18_9STRA3.500e-5850.985-formyltetrahydrofolate cyclo-ligase n=1 Tax=Trib... [more]
A0A0G4F0S7_VITBC4.390e-4242.585-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitr... [more]
A0A067D9P6_SAPPC5.560e-4242.795-formyltetrahydrofolate cyclo-ligase n=2 Tax=Sapr... [more]
A0A0G4HSL4_9ALVE1.100e-4138.33Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
W4FG50_9STRA1.880e-4142.795-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A1V9ZFD4_9STRA5.670e-4044.175-formyltetrahydrofolate cyclo-ligase n=1 Tax=Achl... [more]
H3HB68_PHYRM1.100e-3940.58J domain-containing protein n=1 Tax=Phytophthora r... [more]
A0A3R7XBT4_9STRA5.170e-3939.135-formyltetrahydrofolate cyclo-ligase n=2 Tax=Pero... [more]
A0A4D9D4C9_9STRA6.310e-3941.475-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1666contigH-paniculata_contig1666:6899..11996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue1.1e-73
Seed eggNOG ortholog2880.D7FQL2
Preferred nameMTHFS
KEGG rclassRC00183
KEGG koko:K01934,ko:K02731,ko:K22255
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,ko03050,map00670,map01100,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005524,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009064,GO:0009108,GO:0009109,GO:0009111,GO:0009396,GO:0009397,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015942,GO:0016053,GO:0016054,GO:0016874,GO:0016879,GO:0016882,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019752,GO:0019842,GO:0019899,GO:0030234,GO:0030272,GO:0030554,GO:0031406,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032780,GO:0032787,GO:0033013,GO:0033014,GO:0033218,GO:0034641,GO:0035639,GO:0035999,GO:0036094,GO:0042030,GO:0042168,GO:0042219,GO:0042365,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0042560,GO:0042737,GO:0042742,GO:0043086,GO:0043167,GO:0043168,GO:0043177,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043462,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046394,GO:0046395,GO:0046483,GO:0046653,GO:0046655,GO:0046657,GO:0046700,GO:0050790,GO:0050830,GO:0050896,GO:0051117,GO:0051186,GO:0051187,GO:0051188,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097367,GO:0098542,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGsCOG0212@1,KOG3093@2759
Ec32 ortholog description5-formyltetrahydrofolate cyclo-ligase
Ec32 orthologEc-01_009140.1
EC3.4.25.1,6.3.3.2
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Exons4
Model size1853
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1666.3760.1prot_H-paniculata_contig1666.3760.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1666 7753..11876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.7648215-UTR-H-paniculata_contig1666:6898..77521622929320.7648215-UTR-H-paniculata_contig1666:6898..7752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 6899..7752 -
1691480814.7657619-UTR-H-paniculata_contig1666:6898..77521691480814.7657619-UTR-H-paniculata_contig1666:6898..7752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 6899..7752 -
1622929320.820426-UTR-H-paniculata_contig1666:11876..119961622929320.820426-UTR-H-paniculata_contig1666:11876..11996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 11877..11996 -
1691480814.8217483-UTR-H-paniculata_contig1666:11876..119961691480814.8217483-UTR-H-paniculata_contig1666:11876..11996Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 11877..11996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.776719-CDS-H-paniculata_contig1666:7752..78691622929320.776719-CDS-H-paniculata_contig1666:7752..7869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 7753..7869 -
1691480814.7801337-CDS-H-paniculata_contig1666:7752..78691691480814.7801337-CDS-H-paniculata_contig1666:7752..7869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 7753..7869 -
1622929320.7866697-CDS-H-paniculata_contig1666:8416..84811622929320.7866697-CDS-H-paniculata_contig1666:8416..8481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 8417..8481 -
1691480814.79179-CDS-H-paniculata_contig1666:8416..84811691480814.79179-CDS-H-paniculata_contig1666:8416..8481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 8417..8481 -
1622929320.7994404-CDS-H-paniculata_contig1666:8797..90201622929320.7994404-CDS-H-paniculata_contig1666:8797..9020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 8798..9020 -
1691480814.804612-CDS-H-paniculata_contig1666:8797..90201691480814.804612-CDS-H-paniculata_contig1666:8797..9020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 8798..9020 -
1622929320.8101406-CDS-H-paniculata_contig1666:11402..118761622929320.8101406-CDS-H-paniculata_contig1666:11402..11876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 11403..11876 -
1691480814.813135-CDS-H-paniculata_contig1666:11402..118761691480814.813135-CDS-H-paniculata_contig1666:11402..11876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 11403..11876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1666.3760.1

>prot_H-paniculata_contig1666.3760.1 ID=prot_H-paniculata_contig1666.3760.1|Name=mRNA_H-paniculata_contig1666.3760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MPGVIFRGLTLFVCRFGGVGNRTRGQECAITRLLHTRSKTEGVAKMSTAS
EGGKAAVGDRATSMAKPSTAHAIGDEGYRERKASMRQRIKAALKGMDKYA
VDAGSATVVERLLVTPQLAEPSAQNSGVSVYLSMPGELATEALVVELFKR
GKKVYIPKVMGPLSADMRMFPLESDQEASSFPLTKWKIPEPPEDLVLSRE
DGTFAGDIDLVVVPAMAFDARCNRLGHGRGYYDCFFERVNKSNADKGRPS
PITMGVCFDEQVVDEVPTSLSDVPLDFVFTPTRTFRRVADKP*
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mRNA from alignment at H-paniculata_contig1666:6899..11996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1666.3760.1 ID=mRNA_H-paniculata_contig1666.3760.1|Name=mRNA_H-paniculata_contig1666.3760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5098bp|location=Sequence derived from alignment at H-paniculata_contig1666:6899..11996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATATTAAGCGGTTATTCGTGTCGAGGATATTAGGGTATTATTGTCAG
TACTAGGTCCAGTATCAATACGTAGCACGCAAGAGGTAGAACCCCTTCAA
CCTGTGCCCTCTGGTCCCACATGCCTGGCGTTATTTTCCGAGGACTAACA
CTGTTCGTTTGTCGATTCGGGGGTGTAGGCAACAGAACTCGAGGTCAAGA
GTGTGCAATAACCCGTCTGCTGCACACCAGGTCGAAGACAGAGGGTGTTG
CCAAGATGTCCACTGCGTCGGAAGGGGGGAAGGCAGCAGTCGGGGATAGA
GCTACGAGTATGGCTAAGCCTTCAACGGCACATGCTATTGGGGATGAAGG
GTACCGCGAGAGAAAGGCATCGATGCGGCAGCGTATCAAGGCAGCACTAA
AGGGAATGGACAAATACGCAGTGGATGCTGGATCTGCAACAGTAGTCGAA
CGACTGCTCGTCACCCCGCAGCTCGCAGAGCCCAGTGCGCAGAATAGCGG
GGTCAGCGTGTACTTGTCTATGCCCGGAGAGTTAGCCACGGAGGCGCTGG
TGGTGGAGCTCTTCAAACGAGGGAAGAAGGTCTACATCCCGAAGGTGTCC
TGCCCAACGTTTTCATGTTTGGACCCTTAGTGAAATACAGTGAGTTTCAG
TTTACTTCAACTTCGAATGATAAATCAGTTGTACCCTCCGTCGGCAAGGA
CAGGTGGCAGACAACAGTTGTGCAACAAGCAGCCCGTAGATTGAGATAAG
GTTGTGACGTTGTGACAGGTCATGACTTTTTATTTTTTTATTTTTTTGCT
TTTCGTGTCTGGGTTGTGCTTCTTGATATGTGCGTGCAAATACGTCTCAT
CTCTTCCTACAGATTAAAGAAAATATAAATGCCGCAAACACCACCAGTCA
ACGTCTGACCTTTTCTTGCACACGTTTAGCCCCGTTTTTTTGTACACGTT
CGACACATGCAACATCAGTAGCTTCTTTTTTCTACCACGTATCTGCCTCT
CTTCGCTCTCCCAAGCCGTCGCATACCATGTCTACTTCTTCCTACTCTCT
TTCAACTCTCGGCTCTTCCCTCTCTTCTCTCCTCTGAATGAATTCGACAG
TCGCCGTCGCGGCTCTTCGCGTTGCTCTGTCTTGCTACTAGCACAACGCG
AGGTCACTTGGCAGTGATCTGAAAGGCAGAGGGACGTGTTTTCGTAGAGG
GTCTGTCGGAGGACGACGAGATCGTTCGCCTGAGTGGGCCATTTCCCGTC
CCCGGGTCGCGGCTCGCGGTTCCTCGTTCGCCAAGTCGTTCCGTCTCATT
ACCGCAGGAATCGCCACAGGTCAAGAGTGCATGCGTCTGAAGGGCGTAGA
TGAAGATATCAAAAGATTCCCAATATGTTGTCTCTTGGCGCTGCTTCGCT
GTGGCGAGCGCATACCCACTGTCTTGGATCGACGTGGGCAGGTTCTTGTT
TGAGGGGGGGGGGGTGATGGTGATGTTGAGTAGCCATCGCTTTGAGTAAT
TCTTGTCGATGGTTGATATCACCGGTTGGGTTACCACGTCTATCCGCAGC
CGTCTCGTGAATTGAGTGATACAGTCACTAGCGGTGTATTCCATGGTATT
GTTACTGCTGTGGCGGTGAGTGTGTGTTGCAACATCTTTTGCTCATGTAT
CGTACAACAGCAGGTAGCTGCTGCAGCTGCTGCAGCAACGATGCTCAAAC
GTGTGGCGCAGCCTTGATGACGTTGATTCGACTCTCACATTGTTTCTATT
CCTTTTCATATTTCGCCTTATTCAATTTGCTGACTGTGCAGACTCGTTGG
TCGAATATTTTATATCTACACGCCAAACCACACCAATAACCCGGGTGTTT
CACAGTACCTGCGGTGGAGGGGCTACGAATCCTGCTGGTACGACTTGCCT
GCGTTTTTCGTGGGAATGGTTTCTGATAACATATACTGTGCTGGTGCTAG
GAATCCTGTTTTGGCTGCTGCTGCTAGAGCTGCCCGCCCGCTGAACATGG
GCTGGAGTTTGAGCGTTAGTGACTGTAGGGAGACTAATCCAGCAGCTTGA
ATCATCTGGTGTATTGATGTCGGCACGTTGTAATTTTCCCGTGTGTCGTG
AGTTACGGCTTTCTCGGCCTTGGTCGCTCTCTAACTTCTTTAACGAGGAA
ACATCACCGCAACGTGGATAATACGATGAAGCTATTTGGATCCTGATGTA
CAGGACGCTTTTCTTCGAGAAGAATTAAAATGTAGTGCCCATAGCCAAAT
TCAGACCCCGAGTGCGGGCATATGCCTCAATCCGAAAATTTCACTTGGCA
CTATGACGGCTCGGAAATGGATGCTCATCAGACGCTGTAAAGCCAGGAAC
ATCTTGCGTATCGTTCCCCCAATACGTAGTTCAGTTTGTCGATGAGTCAT
ATACTGCAAGAGAATAGTCGTATTATTCGTATTATTCTAGTTTCAGGAAA
CCCAAATTTCCAAACTGTGTTCCCATAGCACCCGAATGGTGAAATTCTCC
AGGGTATGTGGTGCACCCGTTGGTGTCGCTGCGCTGTGGCATAGTTGGTG
TGCAAATTTCTTTGCCTCTGTATGAAATGAACGAATTGATACCTTGTAAC
AAAACACGTAAGTTATTTAAATGTTTCACAGGCACTCCCACAAGAACCCC
CCGAGCAGTATTTGTGTGCACCTTGTAGCTGGAAGCAGAGCAGTGTAGGT
GAGCTCCGGGGAAGCAAGATTTTGTTGGACATCAATCCTTGACATAAGCC
GCGGCCAGCGTGATACTGATAGCTTGACTGCTTACGGAGTGATGTACACG
AAAAGTGTACTTATTTTCCGTATCTGATACCCCCCGCCTCCCGCCGACCT
GCCATCGCCGCCGCTGCTGCTCAAGCCGCCCCACCTTATCCCCAATATTT
GACCTTCAGGGATGGCGTTCCGAATATTTGAGAGACCGCCGAGTTATTTT
TTTTTCTATATTCTGTTATCACGCAGGTAATGGGTCCACTGTCGGCTGAC
ATGCGGATGTTTCCCCTCGAATCGGATCAAGAGGCGAGCTCCTTCCCTTT
AACCAAGTGGAAAATCCCGGAGCCCCCTGAGGATTTGGTCCTATCGCGTG
AAGATGGAACATTTGCGGGTGACATCGATCTCGTCGTCGTTCCTGCAATG
GCATTTGACGCACGATGTAACCGTCTCGGACACGGCAGAGGATACTACGG
TGATGGAAGCATCATGATATCGTGATGTGTGATGAGCGTTCACGTGTATG
TAACAAATGCGAACCCTACTATGCGTTGGATACGAGTTGAATGTAACAAA
ACGGTGAATTCGTTCCAATTATTAGAAAGGTGTCCGTGCTACTCCGGACG
GTGTTACGGCGGAAACAGATACGCTGGAGGACACAACTCGCTGTTTGCGT
TGTTTGGCGTATGCAATTTACCTGGACGACAAGTTTATGCTCTCGCAACA
CGAATGATTCTAACCGTTTGCATCTCTTTTCCCGGATGGTTGATGCTGCG
TTCTTTTTTTTTCAGATTGTTTCTTTGAGCGCGTCAACAAGTCCAACGCA
GACAAGGGGCGACCTTCGCCGATTACGATGGTGAGCTCTTTTTTGCCTCG
ACATTCTGATTTCGCGTGCGTCCTGGTTTCAAAAGTCAAAGTCGAAATGA
ACCGTAGTAGCTAATGAGGGGTATTCCACGACCATGGTTGAAAACTTATC
TCCATGACTCGCTGTTCACGAATCACATCAGCCTGTTTTTTACGCAGTTG
GTTTTCTGCTGAAATTCTCGTTAATTATTTCAATTGGAATGCTGTAGGTG
CTGTTAGCGGTGGTGTTCCTTTTGGAAAACAGTATATCATACTTTGTTCG
AGTGTGTTCACGAGGTTTGGCGCATAAATAAGCTGTACATGGGTGAACTG
TGCACTGACTCTTGGCTTCACTGGAGTGCGTTCGCAGCGACCTTCGGCTG
ATAGCTAGCACCGACACCGGTTGATTCCATAATGCATGATTGTCGCCAGG
AGTCGCACAACAGTAGTGCAGTTTGATGAGAGAAGGGACTAGCATATCCA
CGTTTTGATAGCTCCCGCGCCTCCCCGTTTTCTCTTCTTGGCTGCTTCCT
CTCTTTGGCCCTCATCAACAACGGCAGGGTGTTTGCTTCGACGAGCAAGT
GGTGGATGAAGTTCCGACATCATTGTCAGACGTACCGCTGGACTTCGTCT
TCACCCCGACCCGCACTTTCCGACGCGTCGCCGACAAGCCTTGATGCGTT
TTTGCATGCATTATGGACCTTCCGAGGACGCTGTATTAACGCAGCATATA
ATGTTGTGTAGATGTGGTTTGGGATGGATGGGACAATTGAGGGGGAGCTC
TGGGCTTCTTCATTGGACGACTTGAAAAATAATATATATATATATATATA
TTTTTTTTTCCCGTCAACGACTTTTTTTTGTGCATTAGATCCATCGATGA
CATGTACACTGATACCGTTCGACTAACATTTGACAACGCAGCATTGCCAG
GTGTCCTTGAAGCAGTCTATGCGGTATCATACTACAGCAGTACAGTTAAT
ACAAATATCTTCATGTACAACATACATTCATGGCACATAGAGAGTACATA
TACATAGGTTTTCTTGTCTGTAGTGACTTTTGGTTATATTTTACTTCCGT
TGTACTGCCAGTTGATCTCCACGAAGCGAGGAGCTCCCGCGAACACGTCA
TACTAGTTACGGTCAACGTCCGTGGACTGCATTGAAAACTGAGTATACGA
GCTGGTATGCACTATTTACCCCATGAAACGGGAACTCGAGAACGAGTGCG
CGGCGGTTTTGCTGGCACTTGAAGGGCAGTTACAATAGCACCCCCTTTTA
ATATCACAACGTGTCTTCTGATACGTCGGAGTCTTTGTTCATGCTTCGCA
CGCCTCCACTTTGTCATCGCGCCCTGTATGATAACAAATGGGGGTGCGGA
TGAAAACACGGGTGCGGGTGAGAACATGAGTACCGGCTTTCATGGACATC
CGTTTGGATTGGTTGACACGTTGTGTGTGTCTGTCTCCCTTCAATGGTGG
ATTACGAGTGTGTCGGCAGGAAGAGCGATGCGATGACAGTGAATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1666:6899..11996-

>mRNA_H-paniculata_contig1666.3760.1 ID=mRNA_H-paniculata_contig1666.3760.1|Name=mRNA_H-paniculata_contig1666.3760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig1666:6899..11996- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGCGTTATTTTCCGAGGACTAACACTGTTCGTTTGTCGATTCGG
GGGTGTAGGCAACAGAACTCGAGGTCAAGAGTGTGCAATAACCCGTCTGC
TGCACACCAGGTCGAAGACAGAGGGTGTTGCCAAGATGTCCACTGCGTCG
GAAGGGGGGAAGGCAGCAGTCGGGGATAGAGCTACGAGTATGGCTAAGCC
TTCAACGGCACATGCTATTGGGGATGAAGGGTACCGCGAGAGAAAGGCAT
CGATGCGGCAGCGTATCAAGGCAGCACTAAAGGGAATGGACAAATACGCA
GTGGATGCTGGATCTGCAACAGTAGTCGAACGACTGCTCGTCACCCCGCA
GCTCGCAGAGCCCAGTGCGCAGAATAGCGGGGTCAGCGTGTACTTGTCTA
TGCCCGGAGAGTTAGCCACGGAGGCGCTGGTGGTGGAGCTCTTCAAACGA
GGGAAGAAGGTCTACATCCCGAAGATGCCTGGCGTTATTTTCCGAGGACT
AACACTGTTCGTTTGTCGATTCGGGGGTGTAGGCAACAGAACTCGAGGTC
AAGAGTGTGCAATAACCCGTCTGCTGCACACCAGGTCGAAGACAGAGGGT
GTTGCCAAGATGTCCACTGCGTCGGAAGGGGGGAAGGCAGCAGTCGGGGA
TAGAGCTACGAGTATGGCTAAGCCTTCAACGGCACATGCTATTGGGGATG
AAGGGTACCGCGAGAGAAAGGCATCGATGCGGCAGCGTATCAAGGCAGCA
CTAAAGGGAATGGACAAATACGCAGTGGATGCTGGATCTGCAACAGTAGT
CGAACGACTGCTCGTCACCCCGCAGCTCGCAGAGCCCAGTGCGCAGAATA
GCGGGGTCAGCGTGTACTTGTCTATGCCCGGAGAGTTAGCCACGGAGGCG
CTGGTGGTGGAGCTCTTCAAACGAGGGAAGAAGGTCTACATCCCGAAGGT
AATGGGTCCACTGTCGGCTGACATGCGGATGTTTCCCCTCGAATCGGATC
AAGAGGCGAGCTCCTTCCCTTTAACCAAGTGGAAAATCCCGGAGCCCCCT
GAGGATTTGGTCCTATCGCGTGAAGATGGAACATTTGCGGGTGACATCGA
TCTCGTCGTCGTTCCTGCAATGGCATTTGACGCACGATGTAACCGTCTCG
GACACGGCAGAGGATACTACGGTAATGGGTCCACTGTCGGCTGACATGCG
GATGTTTCCCCTCGAATCGGATCAAGAGGCGAGCTCCTTCCCTTTAACCA
AGTGGAAAATCCCGGAGCCCCCTGAGGATTTGGTCCTATCGCGTGAAGAT
GGAACATTTGCGGGTGACATCGATCTCGTCGTCGTTCCTGCAATGGCATT
TGACGCACGATGTAACCGTCTCGGACACGGCAGAGGATACTACGATTGTT
TCTTTGAGCGCGTCAACAAGTCCAACGCAGACAAGGGGCGACCTTCGCCG
ATTACGATGATTGTTTCTTTGAGCGCGTCAACAAGTCCAACGCAGACAAG
GGGCGACCTTCGCCGATTACGATGGGTGTTTGCTTCGACGAGCAAGTGGT
GGATGAAGTTCCGACATCATTGTCAGACGTACCGCTGGACTTCGTCTTCA
CCCCGACCCGCACTTTCCGACGCGTCGCCGACAAGCCTTGAGGTGTTTGC
TTCGACGAGCAAGTGGTGGATGAAGTTCCGACATCATTGTCAGACGTACC
GCTGGACTTCGTCTTCACCCCGACCCGCACTTTCCGACGCGTCGCCGACA
AGCCTTGA
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