mRNA_H-paniculata_contig1666.3759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1666.3759.1
Unique NamemRNA_H-paniculata_contig1666.3759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1666.3759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1666contigH-paniculata_contig1666:289..699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1666.3759.1prot_H-paniculata_contig1666.3759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1666 391..696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.7094512-UTR-H-paniculata_contig1666:288..3901622929320.7094512-UTR-H-paniculata_contig1666:288..390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 289..390 +
1691480814.724434-UTR-H-paniculata_contig1666:288..3901691480814.724434-UTR-H-paniculata_contig1666:288..390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 289..390 +
1622929320.729556-UTR-H-paniculata_contig1666:696..6991622929320.729556-UTR-H-paniculata_contig1666:696..699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 697..699 +
1691480814.7551568-UTR-H-paniculata_contig1666:696..6991691480814.7551568-UTR-H-paniculata_contig1666:696..699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1666 697..699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.719815-CDS-H-paniculata_contig1666:390..6961622929320.719815-CDS-H-paniculata_contig1666:390..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 391..696 +
1691480814.736095-CDS-H-paniculata_contig1666:390..6961691480814.736095-CDS-H-paniculata_contig1666:390..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1666 391..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1666.3759.1

>prot_H-paniculata_contig1666.3759.1 ID=prot_H-paniculata_contig1666.3759.1|Name=mRNA_H-paniculata_contig1666.3759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MVLYQIVTLLTYYTPQPSRPEAKYSRAKLETVSNVFSKRSVLGTTRGETK
EDMPYRHQAAVSLSEVLSIMAFVRLERWYCIKSSLRCHTTRHGQMDGEVN
N*
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mRNA from alignment at H-paniculata_contig1666:289..699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1666.3759.1 ID=mRNA_H-paniculata_contig1666.3759.1|Name=mRNA_H-paniculata_contig1666.3759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig1666:289..699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTACGGGACGAGACAAGGACGATCTGTACTACACGTGCACCGGACAGG
CGGACCGTTTGTTCGAGGCTATTTCAGTCACGCTTTTCGTCAGACTCGAA
AGATGGTATTGTATCAAATCGTCACTCTGCTGACGTACTACACGCCACAA
CCCAGTAGGCCGGAAGCAAAATATTCGAGGGCCAAGCTCGAAACGGTATC
CAATGTGTTTAGTAAACGTTCCGTTTTGGGGACCACACGAGGTGAAACTA
AAGAGGATATGCCGTATAGGCACCAGGCAGCAGTCAGTTTGTCAGAGGTT
CTATCAATCATGGCTTTCGTCAGACTCGAAAGATGGTATTGTATCAAATC
GTCACTCCGCTGCCATACTACACGACACGGTCAAATGGACGGAGAAGTGA
ATAATTGAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1666:289..699+

>mRNA_H-paniculata_contig1666.3759.1 ID=mRNA_H-paniculata_contig1666.3759.1|Name=mRNA_H-paniculata_contig1666.3759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig1666:289..699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGTATCAAATCGTCACTCTGCTGACGTACTACACGCCACAACC
CAGTAGGCCGGAAGCAAAATATTCGAGGGCCAAGCTCGAAACGGTATCCA
ATGTGTTTAGTAAACGTTCCGTTTTGGGGACCACACGAGGTGAAACTAAA
GAGGATATGCCGTATAGGCACCAGGCAGCAGTCAGTTTGTCAGAGGTTCT
ATCAATCATGGCTTTCGTCAGACTCGAAAGATGGTATTGTATCAAATCGT
CACTCCGCTGCCATACTACACGACACGGTCAAATGGACGGAGAAGTGAAT
AATTGAATGGTATTGTATCAAATCGTCACTCTGCTGACGTACTACACGCC
ACAACCCAGTAGGCCGGAAGCAAAATATTCGAGGGCCAAGCTCGAAACGG
TATCCAATGTGTTTAGTAAACGTTCCGTTTTGGGGACCACACGAGGTGAA
ACTAAAGAGGATATGCCGTATAGGCACCAGGCAGCAGTCAGTTTGTCAGA
GGTTCTATCAATCATGGCTTTCGTCAGACTCGAAAGATGGTATTGTATCA
AATCGTCACTCCGCTGCCATACTACACGACACGGTCAAATGGACGGAGAA
GTGAATAATTGA
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