mRNA_H-paniculata_contig16646.3755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16646.3755.1
Unique NamemRNA_H-paniculata_contig16646.3755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 7.420e-9
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A    + ++  FM+VGHTH+KIDQIFSRF+ G++GKNIFTR+Q +E+
Sbjct:   40 LVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEV 88
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.910e-9
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ  E+
Sbjct:   64 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGEL 112
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.820e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ  E+
Sbjct:   64 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGEL 112
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.880e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ  E+
Sbjct:  176 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGEL 224
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.480e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSE 366
            ++A G     +  F++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ  E
Sbjct:  231 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGE 278
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.180e-7
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSE 366
            ++A    + ++  FM+VGHTH KIDQ+FSRF+ G++GKNIFTR+  +E
Sbjct:  243 LVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAE 290
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.730e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F++VGHT IKID +FSRF+VG  G++IFTRSQ  E+
Sbjct:  338 LVAAGVVVSAEVCFLIVGHTLIKIDHVFSRFSVGTLGRSIFTRSQLGEL 386
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.150e-6
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:  127 MTRDFGRTMTSSTTKGLVKVDRQVIEDNTR------KSIIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 357
            +T  +G T+   T    V+VD  V E+          +++ +G  + +   FM+VGHTHI+IDQIFS FA  V+G +IFTR +
Sbjct:  204 LTLSWGHTLGDVT----VQVDNTVSENKNNYLMGILAAMVGRGIMRTVTLCFMMVGHTHIQIDQIFSCFAKAVKGVDIFTREE 282
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.740e-5
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F++VGHTH K DQ+FSR +VG  G++IFTR Q  E+
Sbjct:  291 LVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGEL 339
[Close]
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.100e-5
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  223 IIAQGDNKPLDYVFMVVGHTHIKIDQIFSRFAVGVRGKNIFTRSQQSEI 369
            ++A G     +  F+++GHTHIKIDQ+FSR  VG  G++IFT+ Q  E+
Sbjct:   64 LVAAGVIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGEL 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16646.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE7.420e-955.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE9.910e-955.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.820e-855.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.880e-855.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE3.480e-856.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE3.180e-752.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE2.730e-651.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL03_9PHAE5.150e-638.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE1.740e-546.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE3.100e-546.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16646contigH-paniculata_contig16646:4665..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16646.3755.1prot_H-paniculata_contig16646.3755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16646 4665..5730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.299682-CDS-H-paniculata_contig16646:4664..48381622929320.299682-CDS-H-paniculata_contig16646:4664..4838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 4665..4838 +
1691480814.450377-CDS-H-paniculata_contig16646:4664..48381691480814.450377-CDS-H-paniculata_contig16646:4664..4838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 4665..4838 +
1622929320.315443-CDS-H-paniculata_contig16646:5014..51511622929320.315443-CDS-H-paniculata_contig16646:5014..5151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 5015..5151 +
1691480814.4619446-CDS-H-paniculata_contig16646:5014..51511691480814.4619446-CDS-H-paniculata_contig16646:5014..5151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 5015..5151 +
1622929320.329935-CDS-H-paniculata_contig16646:5672..57301622929320.329935-CDS-H-paniculata_contig16646:5672..5730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 5673..5730 +
1691480814.4729033-CDS-H-paniculata_contig16646:5672..57301691480814.4729033-CDS-H-paniculata_contig16646:5672..5730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16646 5673..5730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16646.3755.1

>prot_H-paniculata_contig16646.3755.1 ID=prot_H-paniculata_contig16646.3755.1|Name=mRNA_H-paniculata_contig16646.3755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
QKWSTISRGGQTGSTGSPVTLSPRRGGALGSAVSQNKKAWNAMTRDFGRT
MTSSTTKGLVKVDRQVIEDNTRKSIIAQGDNKPLDYVFMVVGHTHIKIDQ
IFSRFAVGVRGKNIFTRSQQSEI
back to top

mRNA from alignment at H-paniculata_contig16646:4665..5730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16646.3755.1 ID=mRNA_H-paniculata_contig16646.3755.1|Name=mRNA_H-paniculata_contig16646.3755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-paniculata_contig16646:4665..5730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAATGGTCGACGATCAGCAGGGGCGGACAGACAGGCTCTACCGGGTC
TCCCGTGACCCTCTCTCCCCGGAGGGGCGGGGCGTTAGGGTCGGCTGTGT
CACAAAACAAGAAGGCGTGGAATGCAATGACGCGTGACTTCGGCCGCACC
ATGACGAGTAGTACAACAAAAGGAGTAAGTGTGACCTATGGGAGAAGTCA
ACGAGCGATTTTTGCCTTGTTTGTGTTTCTTATACCTGTTCCGTTCGATT
ATGGTGATATATTATTGGTGACCGTTCAATGCTGTTGTGTAATGCTTTTT
TTTCAATATCACCCTGTCTCCTCTTCTTCTTCGTTCTTTTGTCTTTGCAG
CTAGTCAAGGTAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCAT
AATTGCTCAGGGCGACAACAAGCCTCTCGACTACGTCTTCATGGTGGTTG
GGCACACCCACATCAAAATTGACCAGATCTTCTCCAGGTGACCTCACATC
ATGCTTGTATTAGTGATGTTTGTTTTGTGCAGATCAGTTGCTAGAATAAC
AGATGCCGCAATATGTATAATAGCAGTGACGTTGTACTTGACACTGACAA
CGTCTCCAATTGGTATTGAATATGCCAAGTTCCATTGACATGCATTGAAG
TTAAACTGCACGCTGTAGCAGTACTCCAATATTTGTGAGTTTCGAATGCA
TTGTTACGTGGTGCTAACGACGTACTTGATGTATAAACTCATTTTTGTTG
CATGCTCGTAGGTCTACAGTTTTTCTCTTCTGTAGCTCACCGTACAAACA
GCTCAAATTCTCAAATTGTGCAATAATATATTATTAGTTAATGCCATAGA
CATGATTGACACCATTGGCTGTGCGCCGAATGTTTCATACAAGCGAGAGC
CAGATTATCTGTGGCACAGCAACTTGTGTACAACTCCTTTTTGACATTAT
TGCCATGATAATGGCTTTGTTTGCACTTCTCCATCAATATTCGTTCGCTG
ACGAGAAGGTTTGCTGTAGGTGTGCGTGGCAAGAACATCTTCACCAGAAG
TCAACAATCAGAGATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16646:4665..5730+

>mRNA_H-paniculata_contig16646.3755.1 ID=mRNA_H-paniculata_contig16646.3755.1|Name=mRNA_H-paniculata_contig16646.3755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig16646:4665..5730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAATGGTCGACGATCAGCAGGGGCGGACAGACAGGCTCTACCGGGTC
TCCCGTGACCCTCTCTCCCCGGAGGGGCGGGGCGTTAGGGTCGGCTGTGT
CACAAAACAAGAAGGCGTGGAATGCAATGACGCGTGACTTCGGCCGCACC
ATGACGAGTAGTACAACAAAAGGACAAAAATGGTCGACGATCAGCAGGGG
CGGACAGACAGGCTCTACCGGGTCTCCCGTGACCCTCTCTCCCCGGAGGG
GCGGGGCGTTAGGGTCGGCTGTGTCACAAAACAAGAAGGCGTGGAATGCA
ATGACGCGTGACTTCGGCCGCACCATGACGAGTAGTACAACAAAAGGACT
AGTCAAGGTAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAA
TTGCTCAGGGCGACAACAAGCCTCTCGACTACGTCTTCATGGTGGTTGGG
CACACCCACATCAAAATTGACCAGATCTTCTCCAGCTAGTCAAGGTAGAT
CGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGCTCAGGGCGA
CAACAAGCCTCTCGACTACGTCTTCATGGTGGTTGGGCACACCCACATCA
AAATTGACCAGATCTTCTCCAGGTTTGCTGTAGGTGTGCGTGGCAAGAAC
ATCTTCACCAGAAGTCAACAATCAGAGATCGTTTGCTGTAGGTGTGCGTG
GCAAGAACATCTTCACCAGAAGTCAACAATCAGAGATC
back to top