mRNA_H-paniculata_contig16571.3730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16571.3730.1
Unique NamemRNA_H-paniculata_contig16571.3730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 9.800e-58
Identity = 120/321 (37.38%), Postives = 185/321 (57.63%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKVCFQEKC 888
            ++D+ILITG +++++   +  LM  F++TD+G V  ++G+EV R+   GTL +S+  Y   IL+R+GME+A+P                         +++QAI GSL +L QCTR+D+ Y V Q  R  + P+Q +M A K +LRYLR  PDLPI Y K  F L  ++D+S G   +   +STTG +  L  G + + +  Q + A ++ EAEL AL+  A++ +Y+S+ + E+G+     V +  D  GAL +ASNA FSSR+KHIA+RF  +RE  K   + + H  S   L+D+ TK L P+   A   ++    KC
Sbjct:  416 YVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL-PKQRFATIMQLIKDYKC 734          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.220e-57
Identity = 113/315 (35.87%), Postives = 180/315 (57.14%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKV 870
            ++D+ILITG  ++L+   +  L  +F++TD+G V  ILG++V R+   GTL +S+  YV + L+RFGM+EA+P                         K YQ++ GS+ +L QCT+FD+ Y   Q ++  S P+Q NM A K +LRYLR  P LPI Y +  F L  ++D+S G   +   +STTG +  LA G + + +  Q +TA S+ EAE+ AL+  A++ +Y+S+ + EL +     V +  D  GAL +A NA  S R+KH+A+R+  +RE      + + H  S+HQL+D+ TK L      ++  ++
Sbjct:  175 YVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG-RSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 488          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.370e-57
Identity = 114/315 (36.19%), Postives = 181/315 (57.46%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKV 870
            ++D+ILITG  ++L+   +  L  +F++TD+G V  ILG++V R+   GTL +S+  YV ++L+RFGM+EA+P                         K YQ++ GS+ +L QCTRFD+ Y   Q ++  S P+Q NM A K +LRYLR  P LPI Y +  F L  ++D+S G   +   +STTG +  LA G + + +  Q +TA S+ EAE+ AL+  A++ +Y+S+ + EL +     V +  D  GAL +A NA  S R+KH+A+R+  +RE      + + H  S+HQL+D+ TK L      ++  ++
Sbjct:  383 YVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG-RSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 696          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.680e-56
Identity = 113/315 (35.87%), Postives = 180/315 (57.14%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKV 870
            ++D+ILITG  ++L+   +  L  +F++TD+G V  ILG++V R+   GTL +S+  YV ++L+RFGM+EA+P                         K YQ++ GS+ +L QCTRFD+ Y   Q ++  S P+Q NM A K +LRYLR  P LPI Y +  F L  ++D+S G   +   +STTG +  LA G + + +  Q +TA S+ EAE+ AL+  A++ +Y+S+ + EL +     V +  D  GAL +A NA  S R+KH+ +R+  +RE      + + H  S+HQL+D+ TK L      ++  ++
Sbjct:  539 YVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG-RSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 852          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.430e-55
Identity = 110/285 (38.60%), Postives = 173/285 (60.70%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT--------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTK 828
            ++D+ILITG  ++L+   +  L  +F++TD+G V  ILG++V R+   GTL +S+  YV ++L+RFGM+EA+P         K YQ++ GS+  L QCTRFD+ Y   Q ++  S P+Q NM A K  +RYLR  P LPI Y +  F L  ++D+S G   +   +STTG +  LA G + + +  Q +TA S+ EAE+ AL+  A++ +Y+S+ + EL +     V +  D  GAL +A NA  S R+K +A+R+  +RE      + + H  S+HQL+D +T+
Sbjct:  158 YVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPDQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG-RSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMTE 441          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.610e-55
Identity = 112/299 (37.46%), Postives = 168/299 (56.19%), Query Frame = 1
Query:   67 MKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKVCFQEKC 888
            M  F++TD+G V  ++G+EV R+   GTL +S+  Y   IL+R+GME+A+P                         +++Q I GSL +L QCTR+D+ Y V Q  R  + P+Q +M A K +LRYLR  PDLPI Y K  F L  ++D+S G   +   +STTG +  L  G + + +  Q + A ++ EAEL AL+  A++ +Y+S+ + E+G+     V +  D  GAL +ASNA FSSR+KHIA+RF  +RE  K   + + H  S   L+D+ TK L P+   A   ++    KC
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL-PKQRFATIMQLIKDYKC 297          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.670e-55
Identity = 114/316 (36.08%), Postives = 177/316 (56.01%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHF-SSLQRITATSSTEAELVALATCAKQGIYMSSLLMELGW-TQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKV 870
            ++D++L+ G     +  V+  L K+F +TDLG  SL+LGME+ R++ + TL +S+  Y  SIL+RFGM  + PT                        ++YQ IVGSL ++ Q  R+D+ Y   Q AR M+KPS+ +M+A K  LRYL    D  I Y K  F+L  +SD++     +   KST+  + +LA+ P+ F S LQ +TA S+ EAELVA A   K+ ++ S+++ ELG+  + +++ V CD    LH   N +FSSR+KHIA+RF  +RE      + I +  ++  L+D+ TK  +      L D +
Sbjct:  118 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNG-KSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLI 432          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 9.720e-52
Identity = 112/288 (38.89%), Postives = 166/288 (57.64%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHP----------TKQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSSLQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQL 834
            ++++ILI+G    L+  ++  L  +F+ITD+G V LILGM+VTR+  +GTL +S+  YV SIL+  GME  +P          +K YQ+I GSL +L QC R+D  Y V+Q  R  SKP++ +  A K  LRY+R  PDL I + +  F +  ++D+S G   + R KSTTG  +                     E+EL A++  AK+  Y+SSLLM L +  L  + +  D  G L LA+N  FSSR+KHIA+RF  ++E  K + + + HV +Q  L+D+ TK L
Sbjct:  577 YVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNR-KSTTGLQV---------------------ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHL 842          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.260e-51
Identity = 108/283 (38.16%), Postives = 167/283 (59.01%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHFSS-LQRITATSSTEAELVALATCAKQGIYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKG 774
            ++D+ILITG +++++   +  LM  F++TD+G V  ++G+EV R+   GTL +S+  Y   IL+R+GME+A+P                         +++QAI GSL +L QCTR+D+ Y V Q  R  + P+Q +M A K +LRYLR  PDLPI Y K  F L  ++D+S G   +   +STTG +  L  G + + +  Q + A ++ EAEL AL+  A++ +Y+S+ + E+G+     V +  D  GAL +ASNA FSSR+KHIA+RF  +R   +  G
Sbjct: 1195 YVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNG-RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRNSRRGTG 1476          
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.310e-51
Identity = 114/316 (36.08%), Postives = 177/316 (56.01%), Query Frame = 1
Query:    1 FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGTLELSRHRYVLSILKRFGMEEAHPT------------------------KQYQAIVGSLTFLIQCTRFDVYYRVSQAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCGGTEETRTKSTTGSMLLLASGPVHF-SSLQRITATSSTEAELVALATCAKQGIYMSSLLMELGW-TQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAVREWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKV 870
            ++D++L+ G     +  V+  L K+F +TDLG  SL+L ME+ R++ + TL +S+  Y  SIL+RFGM  + PT                        ++YQ IVGSL ++ Q  R+D+ Y   Q AR M+KPS+ +M+A K  LRYL    D  I Y K  F+L  +SD++     +   KST+  + +LA+ P+ F S LQ +TA S+ EAELVA A   K+ ++ S+++ ELG+  + +++ V CD    LH   N +FSSR+KHIA+RF  +RE      + I +V ++  L+D+ TK  +      L D +
Sbjct:  678 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNG-KSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLI 992          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16571.3730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF46_9PHAE9.800e-5837.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.220e-5735.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.370e-5736.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE4.680e-5635.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDK0_9PHAE1.430e-5538.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KC04_9PHAE2.610e-5537.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE5.670e-5536.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE9.720e-5238.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHG5_9PHAE1.260e-5138.16Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KNH5_9PHAE1.310e-5136.08Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16571contigH-paniculata_contig16571:3875..4762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue4.1e-39
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.7801025-CDS-H-paniculata_contig16571:3874..47621622929316.7801025-CDS-H-paniculata_contig16571:3874..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16571 3875..4762 +
1691480812.8729086-CDS-H-paniculata_contig16571:3874..47621691480812.8729086-CDS-H-paniculata_contig16571:3874..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16571 3875..4762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16571.3730.1prot_H-paniculata_contig16571.3730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16571 3875..4762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16571.3730.1

>prot_H-paniculata_contig16571.3730.1 ID=prot_H-paniculata_contig16571.3730.1|Name=mRNA_H-paniculata_contig16571.3730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=296bp
FLDNILITGPSEKLLIGVRNGLMKKFDITDLGNVSLILGMEVTRNKTSGT
LELSRHRYVLSILKRFGMEEAHPTKQYQAIVGSLTFLIQCTRFDVYYRVS
QAARFMSKPSQDNMIAVKRILRYLRWQPDLPIKYSKNNFELVGYSDASCG
GTEETRTKSTTGSMLLLASGPVHFSSLQRITATSSTEAELVALATCAKQG
IYMSSLLMELGWTQLSKVEVLCDVKGALHLASNANFSSRSKHIAIRFAAV
REWNKNKGLVIDHVSSQHQLSDVLTKQLHPRALIALCDKVCFQEKC
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mRNA from alignment at H-paniculata_contig16571:3875..4762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16571.3730.1 ID=mRNA_H-paniculata_contig16571.3730.1|Name=mRNA_H-paniculata_contig16571.3730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=888bp|location=Sequence derived from alignment at H-paniculata_contig16571:3875..4762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTTGACAATATTCTCATCACCGGACCTTCGGAGAAACTACTGATTGG GGTACGCAACGGCTTGATGAAGAAATTTGACATCACTGACTTAGGAAACG TCTCACTAATACTGGGCATGGAGGTAACTCGCAACAAGACGTCTGGTACG CTGGAGCTATCTCGACACAGGTACGTACTTTCTATTCTGAAACGATTTGG AATGGAAGAGGCTCATCCAACCAAGCAGTATCAAGCTATCGTGGGGAGCC TCACCTTCCTCATTCAATGCACACGGTTTGACGTCTACTATAGGGTGAGC CAAGCAGCTCGCTTCATGAGCAAGCCTTCTCAGGACAACATGATCGCGGT AAAGAGGATTTTACGGTACCTACGGTGGCAACCAGATCTGCCCATCAAAT ATAGCAAAAACAATTTTGAGCTAGTGGGCTACTCAGACGCCTCTTGTGGA GGAACAGAGGAGACACGAACAAAGTCGACTACCGGTTCAATGTTATTATT GGCAAGTGGACCGGTACACTTCTCAAGCCTTCAACGCATCACAGCAACCT CCAGCACTGAGGCAGAGCTAGTGGCATTAGCTACATGTGCAAAGCAAGGT ATTTACATGTCAAGTTTGCTGATGGAGCTTGGATGGACGCAGCTCTCCAA AGTTGAAGTGCTCTGCGACGTTAAGGGTGCTCTGCACCTAGCCAGCAACG CAAACTTCAGCTCGCGTAGCAAACACATCGCCATCCGCTTTGCAGCTGTC CGGGAATGGAACAAGAACAAGGGGCTTGTTATCGACCACGTCTCCTCACA GCACCAACTGAGCGATGTCCTCACCAAGCAGCTACACCCGAGGGCACTTA TAGCACTCTGTGACAAAGTCTGTTTCCAAGAAAAGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig16571:3875..4762+

>mRNA_H-paniculata_contig16571.3730.1 ID=mRNA_H-paniculata_contig16571.3730.1|Name=mRNA_H-paniculata_contig16571.3730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1776bp|location=Sequence derived from alignment at H-paniculata_contig16571:3875..4762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCTTGACAATATTCTCATCACCGGACCTTCGGAGAAACTACTGATTGG
GGTACGCAACGGCTTGATGAAGAAATTTGACATCACTGACTTAGGAAACG
TCTCACTAATACTGGGCATGGAGGTAACTCGCAACAAGACGTCTGGTACG
CTGGAGCTATCTCGACACAGGTACGTACTTTCTATTCTGAAACGATTTGG
AATGGAAGAGGCTCATCCAACCAAGCAGTATCAAGCTATCGTGGGGAGCC
TCACCTTCCTCATTCAATGCACACGGTTTGACGTCTACTATAGGGTGAGC
CAAGCAGCTCGCTTCATGAGCAAGCCTTCTCAGGACAACATGATCGCGGT
AAAGAGGATTTTACGGTACCTACGGTGGCAACCAGATCTGCCCATCAAAT
ATAGCAAAAACAATTTTGAGCTAGTGGGCTACTCAGACGCCTCTTGTGGA
GGAACAGAGGAGACACGAACAAAGTCGACTACCGGTTCAATGTTATTATT
GGCAAGTGGACCGGTACACTTCTCAAGCCTTCAACGCATCACAGCAACCT
CCAGCACTGAGGCAGAGCTAGTGGCATTAGCTACATGTGCAAAGCAAGGT
ATTTACATGTCAAGTTTGCTGATGGAGCTTGGATGGACGCAGCTCTCCAA
AGTTGAAGTGCTCTGCGACGTTAAGGGTGCTCTGCACCTAGCCAGCAACG
CAAACTTCAGCTCGCGTAGCAAACACATCGCCATCCGCTTTGCAGCTGTC
CGGGAATGGAACAAGAACAAGGGGCTTGTTATCGACCACGTCTCCTCACA
GCACCAACTGAGCGATGTCCTCACCAAGCAGCTACACCCGAGGGCACTTA
TAGCACTCTGTGACAAAGTCTGTTTCCAAGAAAAGTGTTTCCTTGACAAT
ATTCTCATCACCGGACCTTCGGAGAAACTACTGATTGGGGTACGCAACGG
CTTGATGAAGAAATTTGACATCACTGACTTAGGAAACGTCTCACTAATAC
TGGGCATGGAGGTAACTCGCAACAAGACGTCTGGTACGCTGGAGCTATCT
CGACACAGGTACGTACTTTCTATTCTGAAACGATTTGGAATGGAAGAGGC
TCATCCAACCAAGCAGTATCAAGCTATCGTGGGGAGCCTCACCTTCCTCA
TTCAATGCACACGGTTTGACGTCTACTATAGGGTGAGCCAAGCAGCTCGC
TTCATGAGCAAGCCTTCTCAGGACAACATGATCGCGGTAAAGAGGATTTT
ACGGTACCTACGGTGGCAACCAGATCTGCCCATCAAATATAGCAAAAACA
ATTTTGAGCTAGTGGGCTACTCAGACGCCTCTTGTGGAGGAACAGAGGAG
ACACGAACAAAGTCGACTACCGGTTCAATGTTATTATTGGCAAGTGGACC
GGTACACTTCTCAAGCCTTCAACGCATCACAGCAACCTCCAGCACTGAGG
CAGAGCTAGTGGCATTAGCTACATGTGCAAAGCAAGGTATTTACATGTCA
AGTTTGCTGATGGAGCTTGGATGGACGCAGCTCTCCAAAGTTGAAGTGCT
CTGCGACGTTAAGGGTGCTCTGCACCTAGCCAGCAACGCAAACTTCAGCT
CGCGTAGCAAACACATCGCCATCCGCTTTGCAGCTGTCCGGGAATGGAAC
AAGAACAAGGGGCTTGTTATCGACCACGTCTCCTCACAGCACCAACTGAG
CGATGTCCTCACCAAGCAGCTACACCCGAGGGCACTTATAGCACTCTGTG
ACAAAGTCTGTTTCCAAGAAAAGTGT
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