mRNA_H-paniculata_contig16566.3728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16566.3728.1
Unique NamemRNA_H-paniculata_contig16566.3728.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 9.500e-30
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:  142 QAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 342
            +AMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYD  EDMTVNTAIGSPLLSRFDLVLLLLDTKNK
Sbjct:  436 EAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDAAEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 502
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A6H5K1D8_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D8_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.350e-29
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:  121 LIPISSRQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 342
            L+P   R AMEQQTLSVAKAGLVCKLNARTT FAVTNTKGTYD  +DMTVNTAIGSPLLSRFDLVLLLLDTKN+
Sbjct:   42 LLPPLCRWAMEQQTLSVAKAGLVCKLNARTTAFAVTNTKGTYDAAQDMTVNTAIGSPLLSRFDLVLLLLDTKNE 115
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A6H5JX13_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX13_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.800e-27
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:  139 RQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTK 336
            R AMEQQTLSVAKAGLVCKLNARTT FAVTNTKGTYD  EDMTVNTAIGSPLLSRF LVLLLLDTK
Sbjct:   48 RWAMEQQTLSVAKAGLVCKLNARTTAFAVTNTKGTYDAAEDMTVNTAIGSPLLSRFALVLLLLDTK 113
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A835Z090_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z090_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.310e-25
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:  142 QAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKN 339
            +AMEQQTLSVAKAGLVCKLN RT VFAVTN KGTYDM E +T NTAIGSPLLSRFDLVLLLLDTK+
Sbjct:  601 EAMEQQTLSVAKAGLVCKLNTRTCVFAVTNPKGTYDMDESVTSNTAIGSPLLSRFDLVLLLLDTKD 666
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A7S0CTT9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTT9_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 2.810e-24
Identity = 48/71 (67.61%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:  130 ISSRQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 342
            ++  +AMEQQTLS+AKAGLVC LN RTT+FAV N KG YD+ +D+TVN AI SPLLSRFDL+LL+LD++N+
Sbjct:    5 LTIHEAMEQQTLSIAKAGLVCTLNTRTTIFAVMNPKGRYDVMQDLTVNCAIASPLLSRFDLILLILDSQNE 75
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A7S2WCY2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCY2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.120e-24
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:  142 QAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKN 339
            +AMEQQTLSVAKAGLVCKLNAR TV AVTN KGTYDM+ED++VNTAI SPLLSRFD+VL+LLDT +
Sbjct:  482 EAMEQQTLSVAKAGLVCKLNARATVIAVTNPKGTYDMSEDISVNTAIASPLLSRFDIVLVLLDTSH 547
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A425C685_9STRA (MCM domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C685_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.120e-23
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:  133 SSRQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 342
            S  +AMEQQTLSVAKAGLVCKLNARTT+FAVTN KG YD T+D++VNT+I SPLLSRFDL+L+LLD  NK
Sbjct:  577 SIHEAMEQQTLSVAKAGLVCKLNARTTIFAVTNPKGRYDPTKDVSVNTSIASPLLSRFDLILVLLDRVNK 646
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BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: K3WF99_GLOUD (MCM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WF99_GLOUD)

HSP 1 Score: 103 bits (257), Expect = 2.030e-23
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:  133 SSRQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKN 339
            S  +AMEQQTLSVAKAGLVCKLNARTT+FAVTN KG YD   D++VNTAIGSPLLSRFDL+L+LLD  N
Sbjct:  483 SIHEAMEQQTLSVAKAGLVCKLNARTTIFAVTNPKGRYDPNADVSVNTAIGSPLLSRFDLILVLLDRMN 551
[Close]
BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A6J1VZ88_9SAUR (DNA helicase MCM9-like n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1VZ88_9SAUR)

HSP 1 Score: 97.1 bits (240), Expect = 3.260e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:  148 MEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKNK 342
            MEQQT+SVAKAGLVCKLN RTT+ A TN KG YD  E ++VN A+GSPLLSRFDLVL+LLDTKN+
Sbjct:    1 MEQQTISVAKAGLVCKLNTRTTILAATNPKGQYDTNESISVNIALGSPLLSRFDLVLVLLDTKNE 65
[Close]
BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Match: A0A2D4CA99_PYTIN (MCM domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CA99_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 5.260e-23
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:  133 SSRQAMEQQTLSVAKAGLVCKLNARTTVFAVTNTKGTYDMTEDMTVNTAIGSPLLSRFDLVLLLLDTKN 339
            S  +AMEQQTLSVAKAGLVCKLNARTT+FAVTN KG YD   D++VNTAI SPLLSRFDL+L+LLD +N
Sbjct:  446 SIHEAMEQQTLSVAKAGLVCKLNARTTIFAVTNPKGRYDPNADVSVNTAIASPLLSRFDLILVLLDRRN 514
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16566.3728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM73_ECTSI9.500e-3095.52MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K1D8_9PHAE2.350e-2986.49MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JX13_9PHAE9.800e-2792.42MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z090_9STRA9.310e-2586.36MCM2/3/5 family-domain-containing protein n=1 Tax=... [more]
A0A7S0CTT9_9EUKA2.810e-2467.61Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2WCY2_9STRA8.120e-2481.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A425C685_9STRA1.120e-2377.14MCM domain-containing protein n=1 Tax=Peronospora ... [more]
K3WF99_GLOUD2.030e-2378.26MCM domain-containing protein n=1 Tax=Globisporang... [more]
A0A6J1VZ88_9SAUR3.260e-2375.38DNA helicase MCM9-like n=1 Tax=Notechis scutatus T... [more]
A0A2D4CA99_PYTIN5.260e-2376.81MCM domain-containing protein (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16566contigH-paniculata_contig16566:3352..4816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size343
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16566.3728.1prot_H-paniculata_contig16566.3728.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16566 3423..4802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.6126912-UTR-H-paniculata_contig16566:3351..34221622929316.6126912-UTR-H-paniculata_contig16566:3351..3422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16566 3352..3422 +
1691480812.7879012-UTR-H-paniculata_contig16566:3351..34221691480812.7879012-UTR-H-paniculata_contig16566:3351..3422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16566 3352..3422 +
1622929316.6452124-UTR-H-paniculata_contig16566:4802..48161622929316.6452124-UTR-H-paniculata_contig16566:4802..4816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16566 4803..4816 +
1691480812.8216076-UTR-H-paniculata_contig16566:4802..48161691480812.8216076-UTR-H-paniculata_contig16566:4802..4816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16566 4803..4816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.6235595-CDS-H-paniculata_contig16566:3422..35881622929316.6235595-CDS-H-paniculata_contig16566:3422..3588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16566 3423..3588 +
1691480812.8040545-CDS-H-paniculata_contig16566:3422..35881691480812.8040545-CDS-H-paniculata_contig16566:3422..3588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16566 3423..3588 +
1622929316.6343381-CDS-H-paniculata_contig16566:4710..48021622929316.6343381-CDS-H-paniculata_contig16566:4710..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16566 4711..4802 +
1691480812.8140733-CDS-H-paniculata_contig16566:4710..48021691480812.8140733-CDS-H-paniculata_contig16566:4710..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16566 4711..4802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16566.3728.1

>prot_H-paniculata_contig16566.3728.1 ID=prot_H-paniculata_contig16566.3728.1|Name=mRNA_H-paniculata_contig16566.3728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MPCGGVLFRSTQRNVKTYTHFVSPGHGAADTECSEGRPGLQAQCANDSIR
SHQHQGYLRHDRRHDGEHGYRQPSSLAIRPRPALA*
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mRNA from alignment at H-paniculata_contig16566:3352..4816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16566.3728.1 ID=mRNA_H-paniculata_contig16566.3728.1|Name=mRNA_H-paniculata_contig16566.3728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-paniculata_contig16566:3352..4816+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGATTTATAGGTGCATGTTTCTCGATGGCATCCCCTCTTGCCGACAGA
CGTATAAGGCCTCGAAGGTGAATGCCGTGTGGTGGTGTGTTATTCCGGTC
AACCCAGCGGAACGTGAAAACTTATACCCATTTCGTCTCGCCAGGCCATG
GAGCAGCAGACACTGAGTGTAGCGAAGGCAGGCCTGGTCTGCAAGCTCAA
TGCGCGAACGACAGTATTCGCAGTCACCAACACCAAGGTTTGTATGTTGT
GTTTGGCAGAACATTATCGTACAGAGCCCCGCACACAATGCAAAGTTGCG
GTAGCAGTGCGTCTGCAAGCAAATACCATCTACAAAATGTACATTCGTAA
ATGTTGTGTACAGCGTTTACAACTCTCTCCCTTATCTTGTTTGAAGGTTT
GCTGATAACTTTATGAAGCTGTGAGGTGAGGGTAGGCTTTATAATCTCAG
TGTGGTATGCATATGTACTTGAAACGTGAGAGATTATGACAGCTTGTCAC
GCGGGTTAACCGTGTTTTCGGGGTTTCTGTGTGAGCATGGGTGTGTGTGT
GTTCATCTGTGTCAGTCATGATTGCTACGTTCATGCATTCTATGTACAAA
AACGTGTGATACACGTATGCCTCCTTTTATATGCAGTAGCCCACTCTCTG
TTTCCGTCCCAAGCAATGTATTTGTCGTGCCACTCGGTCGTTCATGCGGC
GAGGCGCATTTCGGATCGCGCAGTAGATCTCGACGTTGGGGTCCATTTAT
GTAGCAGACCCAAAATTCGAAAGCATCCATTCAGGAAAAGCCGCATTCAC
CTGCAAGATACAGTTGAAAGTGGGTATAAATTAAATGTAGTGATAGCCAT
ATGGGGGGCAAGCACTTGTTCAAGCACAGCTCTCTCAGCCAACTGTTTTC
TAGTCTTCAATCTATCACAATGGGGGTAGCTAGGCCCCAGAAAATGCTAT
CAAGAGCACTCCGAACGTCAGTACACAATGACTTCAAGAGCTGTGTGCGG
GTACATTTTGTCCCATATCTACTTTCCAGGTGTTCGCTTCCTGCAATTGT
TCGCTGCTTGGCTCGCAGTATATTTCACCCCCTTCCTATGGATATTAAGT
AGGGTGTCTAGCAAGATCTCTGAGCGTTGAAGCATCCCCATACCCCCAGC
AATATGATGCCTCTTGTGTATCCTTTCCCACCAACCTTCGTTACAGTAGC
ACCACATCAAATGCACATTAGCCACCGGCAGTCATTGTTACCCAAATGGT
ATAGCAACTTCTCTCCCCCTGAGATGATTAACCCCGCCGTCCGCATGATG
AAGCGGTCGGGTATAGATACATATTCCATCCACGTTAATGTTGCACCGGA
CGAAACAAGGGTACTTACGACATGACCGAAGACATGACGGTGAACACGGC
TATCGGCAGCCCTCTTCTCTCGCGATTCGACCTCGTCCTGCTCTTGCTTG
ACACCAAGAACAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16566:3352..4816+

>mRNA_H-paniculata_contig16566.3728.1 ID=mRNA_H-paniculata_contig16566.3728.1|Name=mRNA_H-paniculata_contig16566.3728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig16566:3352..4816+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTGTGGTGGTGTGTTATTCCGGTCAACCCAGCGGAACGTGAAAAC
TTATACCCATTTCGTCTCGCCAGGCCATGGAGCAGCAGACACTGAGTGTA
GCGAAGGCAGGCCTGGTCTGCAAGCTCAATGCGCGAACGACAGTATTCGC
AGTCACCAACACCAAGATGCCGTGTGGTGGTGTGTTATTCCGGTCAACCC
AGCGGAACGTGAAAACTTATACCCATTTCGTCTCGCCAGGCCATGGAGCA
GCAGACACTGAGTGTAGCGAAGGCAGGCCTGGTCTGCAAGCTCAATGCGC
GAACGACAGTATTCGCAGTCACCAACACCAAGGGTACTTACGACATGACC
GAAGACATGACGGTGAACACGGCTATCGGCAGCCCTCTTCTCTCGCGATT
CGACCTCGTCCTGCTCTTGCTTGAGGTACTTACGACATGACCGAAGACAT
GACGGTGAACACGGCTATCGGCAGCCCTCTTCTCTCGCGATTCGACCTCG
TCCTGCTCTTGCTTGA
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