mRNA_H-paniculata_contig16548.3724.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16548.3724.1
Unique NamemRNA_H-paniculata_contig16548.3724.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 139 bits (349), Expect = 1.390e-38
Identity = 67/147 (45.58%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIR-EVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 462
            G+ DADW  DV++ +S TGY+F++ G A+SW S++Q  V  S+ E EY A     +E V++REL   +     G  T+FEDN+SAI+++K    H R KHIG+++H IRE +  E + +KY +T D +ADI TKGL+  KF+RLR+L
Sbjct:   30 GYSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 139 bits (351), Expect = 3.120e-38
Identity = 75/145 (51.72%), Postives = 97/145 (66.90%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIREV-LALKYVQTGDQLADILTKGLSRVKFQRLR 456
            GF D+D+  DV+ RKS TGYVF +  GAI+WCSR+QQ  + S+TE EY AA EA KE ++LR LL  I      +  L+ DN+SAI L K    H RTKHI VR+H I+E  +   + ++YV++ DQLADILTK L  VKF +LR
Sbjct:  103 GFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 147 bits (370), Expect = 6.400e-38
Identity = 71/143 (49.65%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIRE-VLALKYVQTGDQLADILTKGLSRVKFQR 450
            G++DADW  DV DR+S +GY F L GGA+SW S+KQ     SSTE EY AA  A KE  +LR  LG IG  C+ +  L  DN+SA+ +++    H RTKHI VR+H +RE +    + L+YV TGDQ+AD+LTKGL + K  +
Sbjct:  985 GYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 140 bits (354), Expect = 1.830e-37
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIRE-VLALKYVQTGDQLADILTKGLSRVKFQRLR 456
            GF+D+D+  DV+DRKS +GYVF L GGA+SW S+KQ +VT S+TE E+ AA     + ++LR +LG IG+      TLF DN S I LSK    H R+KHI VR++ +R+ + E V+ LK+  T DQL+DI+TK +    F+RLR
Sbjct:  222 GFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 138 bits (348), Expect = 1.910e-37
Identity = 79/155 (50.97%), Postives = 97/155 (62.58%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIG---FGCRGSRT----LFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWI-REVLALKYVQTGDQLADILTKGLSRVKFQRLRNLL 465
            G+ DADW  D  DR+S + YVFKL GGAISWCSRKQQ +  SSTE EY A   A KE ++L  LL  +    F    SR     +  DN+SA+ L+K S  H RTKHI VR H IR+ + R  L ++YV TGDQ+AD+LTK L+R K     NLL
Sbjct:  127 GYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 138 bits (347), Expect = 8.060e-37
Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIRE-VLALKYVQTGDQLADILTKGLSRVKFQR 450
            G++DADW  DV DR+S +GY F L GGAISW S+KQ     SSTE EY  A  A KE  +LR  L  IG  C+ +  L  DN+SA+ ++     H RTKHI +R+H +RE +    + L+YV TGDQ+AD+L KGL + K  +
Sbjct:  179 GYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 135 bits (340), Expect = 8.500e-37
Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIRE-VLALKYVQTGDQLADILTKGLSRVKFQR 450
            G++DADW  DV DR S +GY F L GGAISW S+KQ +   SSTE EY AA  A KE  +L   L  IG  C+ +  L  DN+SA+ ++     H +TKHI VR+H +RE +    + L+YV  GDQ+AD+LTKGL + K  +
Sbjct:   81 GYVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAKHDK 223          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: A0A7D9KIP6_PARCT (Uncharacterized protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KIP6_PARCT)

HSP 1 Score: 132 bits (333), Expect = 1.290e-36
Identity = 62/147 (42.18%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   25 GFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWI-REVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 462
            GF DADW  D+ DRKS +GY F++NG A+SW S+KQ  V  S+ E +Y A   A +E +++R+LL  +        T++EDN+SAI +SK    H R+KHI +++H +R+ + ++ L + Y  TG  LAD+ TKG+ + +F +LR L
Sbjct:    8 GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAKYVALSAAAQEALWMRQLLTDLNVNFDEQMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFTKLREL 154          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 137 bits (344), Expect = 2.150e-36
Identity = 69/156 (44.23%), Postives = 107/156 (68.59%), Query Frame = 1
Query:    1 KSNGHGQEGFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIR-EVLALKYVQTGDQLADILTKGLSRVKFQRLRNLL 465
            + +G G  G+ D+D+  D++DRKS +G++F LN GAISW S+KQQ+VT SSTE EY AA  +  + ++LR++   +G   +G  T++ DN S I LS+    H R+KHI VR+H +R+    E + L+Y ++G+Q+ADILTK L +  F++LR++L
Sbjct:  158 REDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313          
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203)

HSP 1 Score: 135 bits (339), Expect = 2.350e-36
Identity = 71/155 (45.81%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 KSNGHGQEGFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWSSTEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGSGAHCRTKHIGVRWHVIREWIR-EVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 462
            KSN     GF D+DW  D +DRKS +GY+F  N G ISW S+KQ+ V  S+ + EY A   A +E +++R LL +I   C     +FEDN+S I+L+K    H R KHI +R+H  RE +    + L Y Q+ D +AD+LTKGLS+VKF +L NL
Sbjct:   96 KSNKGELVGFSDSDWAGDHDDRKSTSGYIFLYNEGPISWKSQKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16548.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7SFX4_AMPQE1.390e-3845.58Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A1Y1N3K4_PHOPY3.120e-3851.72Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A4Y9ZY34_9AGAM6.400e-3849.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JBX5_9BRAS1.830e-3748.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SU91_PYCCI1.910e-3750.97Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A4Y9ZSL8_9AGAM8.060e-3747.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Z0A7X3_9AGAM8.500e-3747.55Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A7D9KIP6_PARCT1.290e-3642.18Uncharacterized protein (Fragment) n=2 Tax=Paramur... [more]
UPI0009AB427F2.150e-3644.23uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
UPI001AE8F2032.350e-3645.81secreted RxLR effector protein 161-like n=1 Tax=Le... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16548contigH-paniculata_contig16548:126..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score139.0
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog400682.PAC_15699201
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3AR45@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929316.3952863-CDS-H-paniculata_contig16548:125..5961622929316.3952863-CDS-H-paniculata_contig16548:125..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16548 126..596 +
1691480812.6695108-CDS-H-paniculata_contig16548:125..5961691480812.6695108-CDS-H-paniculata_contig16548:125..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16548 126..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16548.3724.1prot_H-paniculata_contig16548.3724.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16548 126..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16548.3724.1

>prot_H-paniculata_contig16548.3724.1 ID=prot_H-paniculata_contig16548.3724.1|Name=mRNA_H-paniculata_contig16548.3724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
KSNGHGQEGFIDADWEEDVEDRKSRTGYVFKLNGGAISWCSRKQQLVTWS
STEPEYFAAGEAGKETVYLRELLGSIGFGCRGSRTLFEDNKSAINLSKGS
GAHCRTKHIGVRWHVIREWIREVLALKYVQTGDQLADILTKGLSRVKFQR
LRNLLM*
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mRNA from alignment at H-paniculata_contig16548:126..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16548.3724.1 ID=mRNA_H-paniculata_contig16548.3724.1|Name=mRNA_H-paniculata_contig16548.3724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig16548:126..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGTAATGGTCACGGTCAGGAAGGATTCATTGATGCCGACTGGGAGGA AGATGTCGAGGACCGAAAGTCCAGAACAGGATACGTATTCAAGCTGAACG GTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACATGGTCC AGTACAGAGCCAGAGTACTTTGCTGCAGGAGAAGCGGGAAAGGAGACGGT ATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGCAGCA GGACATTGTTTGAGGACAACAAATCAGCTATTAATCTCAGTAAGGGATCT GGCGCACACTGCAGGACAAAGCACATTGGAGTGCGCTGGCACGTAATTCG AGAGTGGATTCGGGAAGTATTGGCATTGAAATACGTGCAGACCGGCGACC AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTAAAGTTTCAGAGA CTGAGAAATTTACTCATGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16548:126..596+

>mRNA_H-paniculata_contig16548.3724.1 ID=mRNA_H-paniculata_contig16548.3724.1|Name=mRNA_H-paniculata_contig16548.3724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig16548:126..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGTAATGGTCACGGTCAGGAAGGATTCATTGATGCCGACTGGGAGGA
AGATGTCGAGGACCGAAAGTCCAGAACAGGATACGTATTCAAGCTGAACG
GTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACATGGTCC
AGTACAGAGCCAGAGTACTTTGCTGCAGGAGAAGCGGGAAAGGAGACGGT
ATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGCAGCA
GGACATTGTTTGAGGACAACAAATCAGCTATTAATCTCAGTAAGGGATCT
GGCGCACACTGCAGGACAAAGCACATTGGAGTGCGCTGGCACGTAATTCG
AGAGTGGATTCGGGAAGTATTGGCATTGAAATACGTGCAGACCGGCGACC
AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTAAAGTTTCAGAGA
CTGAGAAATTTACTCATGTAAAAGAGTAATGGTCACGGTCAGGAAGGATT
CATTGATGCCGACTGGGAGGAAGATGTCGAGGACCGAAAGTCCAGAACAG
GATACGTATTCAAGCTGAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAG
CAACAGTTAGTCACATGGTCCAGTACAGAGCCAGAGTACTTTGCTGCAGG
AGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCGATAG
GTTTCGGATGCAGGGGCAGCAGGACATTGTTTGAGGACAACAAATCAGCT
ATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGACAAAGCACATTGG
AGTGCGCTGGCACGTAATTCGAGAGTGGATTCGGGAAGTATTGGCATTGA
AATACGTGCAGACCGGCGACCAACTTGCTGACATTTTAACGAAAGGACTA
AGCAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCATGTAA
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