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Homology
BLAST of mRNA_H-paniculata_contig1652.3717.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 9.300e-22 Identity = 96/190 (50.53%), Postives = 109/190 (57.37%), Query Frame = 0
Query: 1 DAEGIWTEAAPASSDKLYELNMQLAAYAKDAQWEQAISLLRQMRA---RSS-------------------------------SAPAAAAV-----DDLDCDSPRANYSNTLKDKDS------TVEPNVVSYNNVITACANAKKQKRAEGMFREMTKXXXXXXXXXXXXXXXXXXXKRGNWEDAVKYLEAM 145
D++ W +A A SD L+ELNMQLAAYAKDAQWE AI LLRQ R RSS +A V D+L P Y++ + ++ VEPNVVSYNNVITACANAKKQKRAEG+FREMTK XXXXXXXXXXXXX KRGNWED+V YLE M
Sbjct: 168 DSDPEWRDAPRADSDALFELNMQLAAYAKDAQWEMAIMLLRQARVLSRRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAAKRRYGVHPGGNDNLSVSVP---YTSAAEKEEEWRLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRXXXXXXXXXXXXXAKRGNWEDSVNYLEQM 354
BLAST of mRNA_H-paniculata_contig1652.3717.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI) HSP 1 Score: 102 bits (254), Expect = 3.670e-19 Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 0
Query: 481 CAGGQAKKLFTFFFFFLRQALRVLSKLKSRRNCTVNVHSYTPVVEALTRELRWQEAIMMFQEMENRKITPTMQSYTNVVRA 561
CA GQA K + +A+++ +KL++RRNC+V +HSYTP+V+ALTRELRWQEAIM+FQEME+RKI PT+Q YT+VVRA
Sbjct: 506 CAAGQASKALVDADQ-IEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRA 585
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 234..389
e-value: 1.0E-11
score: 44.6 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 187..231
e-value: 1.9E-10
score: 40.8
coord: 398..446
e-value: 2.3E-9
score: 37.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 77..132
e-value: 4.9E-13
score: 48.9
coord: 510..556
e-value: 0.0052
score: 16.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 156..185
e-value: 0.001
score: 19.2 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 401..434
e-value: 5.9E-5
score: 21.0
coord: 295..329
e-value: 8.2E-6
score: 23.7
coord: 190..223
e-value: 2.2E-9
score: 34.9
coord: 436..470
e-value: 2.4E-4
score: 19.1
coord: 84..119
e-value: 1.4E-4
score: 19.8
coord: 518..551
e-value: 5.7E-5
score: 21.0
coord: 260..293
e-value: 3.7E-5
score: 21.6
coord: 366..400
e-value: 8.2E-4
score: 17.4
coord: 330..364
e-value: 2.5E-5
score: 22.2
coord: 120..154
e-value: 4.5E-9
score: 33.9
coord: 155..187
e-value: 7.8E-4
score: 17.5 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 293..327
score: 11.345 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 258..292
score: 9.887 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 118..152
score: 13.154 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 188..222
score: 12.244 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 153..187
score: 11.038 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 469..503
score: 6.27 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 16..50
score: 7.421 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 516..550
score: 10.457 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 399..433
score: 10.95 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 434..468
score: 10.084 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 82..117
score: 9.799 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 328..362
score: 10.348 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 223..257
score: 8.758 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 363..398
score: 10.008 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 236..389
e-value: 7.5E-41
score: 142.4 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 16..144
e-value: 2.3E-21
score: 78.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 390..494
e-value: 1.4E-28
score: 102.4 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 496..561
e-value: 3.9E-10
score: 41.3
coord: 145..235
e-value: 2.7E-28
score: 100.5 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 412..560
coord: 190..304
coord: 289..487
coord: 25..205 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig1652.3717.1 ID=prot_H-paniculata_contig1652.3717.1|Name=mRNA_H-paniculata_contig1652.3717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=562bp
DAEGIWTEAAPASSDKLYELNMQLAAYAKDAQWEQAISLLRQMRARSSSA
PAAAAVDDLDCDSPRANYSNTLKDKDSTVEPNVVSYNNVITACANAKKQK
RAEGMFREMTKDRGLRPNVFTYGALISACAKRGNWEDAVKYLEAMRDSGL
APNAIVYSTVISACERSDQWQRAVNLLRAMRQDGIIPVTVTYNTVISACG
KSGQWQLAVSLLDEMLELGAPPDMVTFASAMLACERAKQWVQVLRIMDQM
QEEGVLMDKYAYTTAIHAAAQLGRWVRAVRYLDEMEANGVKKDVVTVSAA
ISACAEKGQWAHAEKLMQDMLESGLTPNVITYTSLMVVLRKGGQYQKSIG
ILDLMRSKGVNPNVRTYSVAIAACADAKEYRQALALMDKDMEREGVFPNT
VTYNTAIRACGDSGALQEGLDLLYDMEENGVKRTVVTYGSAISACHKSCD
WQMALELLAKMRRDQIEPNEIVYMGVIKACCAGGQAKKLFTFFFFFLRQA
LRVLSKLKSRRNCTVNVHSYTPVVEALTRELRWQEAIMMFQEMENRKITP
TMQSYTNVVRA* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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