mRNA_H-paniculata_contig1057.372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: D7FHF7_ECTSI (40S ribosomal protein S12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF7_ECTSI) HSP 1 Score: 254 bits (648), Expect = 2.790e-82 Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 1 Query: 49 TGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGE 444 TG+ EVKEISVLDALK+VLKKALIFDGLRRGLHECAK LDRGSARLCCLAKDCDNPEYTQLVRALCDEG+VHLIMVD+RQELGQWAGLCKIG EGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGG+ Sbjct: 10 TGSPEVEVKEISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGD 141
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A835YYB7_9STRA (40S ribosomal protein S12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB7_9STRA) HSP 1 Score: 218 bits (555), Expect = 3.910e-68 Identity = 105/148 (70.95%), Postives = 123/148 (83.11%), Query Frame = 1 Query: 1 MVAEDVMAGDGAGENVTGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGE 444 M +EDV A A+V E +SV DALK+VLKKALIFDGLRRGLHEC K LDRG+ARLCCLAKDC+NPEYT+LVRALC+EG VH+IMV++RQ+LGQWAGLCKI EGEATK+VPCSCAVVTD+G ++ AL VL+EHL+KGGE Sbjct: 1 MSSEDVAEAPAAAAPAPAADVAE---LSVPDALKEVLKKALIFDGLRRGLHECVKALDRGTARLCCLAKDCENPEYTRLVRALCEEGGVHIIMVNTRQQLGQWAGLCKIDAEGEATKVVPCSCAVVTDFGTESPALTVLMEHLRKGGE 145
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A7S2CVX4_9STRA (40S ribosomal protein S12 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVX4_9STRA) HSP 1 Score: 194 bits (493), Expect = 9.380e-59 Identity = 92/137 (67.15%), Postives = 113/137 (82.48%), Query Frame = 1 Query: 28 DGAGENVTGAEV--TEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLK 432 D E AE EV+E+ VLDALK+VLKKAL+ DGL RGLHECAK LD+ +A+LCCLAKDCDNPEYT+LVRALC+EG V+L+MVD+ ++LG+W GLCKI EGEATK+V CSCAV+T++GE++QAL VLLE LK Sbjct: 5 DAVMETAEAAETEEVEVEEMGVLDALKEVLKKALVHDGLSRGLHECAKALDKHTAKLCCLAKDCDNPEYTKLVRALCEEGGVNLVMVDTGKQLGEWCGLCKIDEEGEATKVVRCSCAVITEFGEESQALNVLLEFLK 141
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A7S2CD91_9STRA (40S ribosomal protein S12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CD91_9STRA) HSP 1 Score: 186 bits (473), Expect = 8.830e-56 Identity = 87/123 (70.73%), Postives = 105/123 (85.37%), Query Frame = 1 Query: 67 EVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKK 435 EV+E+ VLDALK+VLKKAL+ DGLRRGLHE K LDR SA+LCCLAKDCDNPEY +LVRALC+EG V+L+MV++ + LG+W GLCKI GEA K+V CSCAVVT++GE+TQAL +LLE LKK Sbjct: 18 EVEEMGVLDALKEVLKKALVHDGLRRGLHEGVKALDRHSAKLCCLAKDCDNPEYNKLVRALCEEGGVNLVMVETGKTLGEWCGLCKIDENGEAVKVVRCSCAVVTEFGEETQALNILLEFLKK 140
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: K0T7T2_THAOC (40S ribosomal protein S12 n=2 Tax=Thalassiosira TaxID=35127 RepID=K0T7T2_THAOC) HSP 1 Score: 177 bits (450), Expect = 2.490e-52 Identity = 87/136 (63.97%), Postives = 106/136 (77.94%), Query Frame = 1 Query: 28 DGAGENVTGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKK 435 D G V V EV E++VLDALK+VLKKALI DGLR+GLHECAK LDR SARLCCLAKDC+N EY +L+RALC EG V +IMVDS ++LG W GL K+ +GE K V SCAV+TD+GE+T+AL VLL++L+K Sbjct: 3 DEEGAPVAEEVVEEVAEMNVLDALKEVLKKALIHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALTVLLDYLQK 138
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A812WN01_SYMMI (40S ribosomal protein S12 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WN01_SYMMI) HSP 1 Score: 174 bits (441), Expect = 4.950e-51 Identity = 81/137 (59.12%), Postives = 106/137 (77.37%), Query Frame = 1 Query: 34 AGENVTGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGE 444 A EN EV E E+ VLDALK+V KKA ++DGLRRG+HECAK LDR +ARLCCLAKDCD+ EY +L++ALCDE VHLIMVDS +E+G+W GL K+ +G + K+V SCAV+T+YGE+T AL V+L++++ E Sbjct: 2 AEENEEVMEVVEEGEMGVLDALKEVFKKAALYDGLRRGIHECAKALDRRAARLCCLAKDCDHEEYVRLIQALCDESGVHLIMVDSGKEIGEWCGLAKLNEDGTSRKVVRTSCAVITEYGEETPALNVVLKYVQSQQE 138
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A7S2LXQ0_9STRA (40S ribosomal protein S12 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LXQ0_9STRA) HSP 1 Score: 175 bits (443), Expect = 9.960e-51 Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 67 EVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKK 435 EV E++VLDALK+VLKKAL+ DGLR+GLHECAK LDR SARLCCLAKDC+N EY +L+RALC EG V +IMVDS ++LG W GL K+ +GE K V SCAV+TD+GE+T+AL VLL++L+K Sbjct: 54 EVAEMNVLDALKEVLKKALVHDGLRKGLHECAKALDRRSARLCCLAKDCENEEYKKLIRALCAEGEVSVIMVDSGKDLGAWCGLAKLDADGEVKKAVRTSCAVITDFGEETRALSVLLDYLQK 176
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: G4ZQP8_PHYSP (40S ribosomal protein S12 n=15 Tax=Eukaryota TaxID=2759 RepID=G4ZQP8_PHYSP) HSP 1 Score: 173 bits (438), Expect = 1.400e-50 Identity = 83/130 (63.85%), Postives = 103/130 (79.23%), Query Frame = 1 Query: 55 AEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGE 444 AEV KE+ +DALK+VLKKALI DGL+RGLHE AK LD ARLCCLA+DCD P Y++LVRALC+E V+LI+V S ++LG+W GLCKI GEA K+V SCAV+TD+GE+T AL VLL++LK+ GE Sbjct: 8 AEVEVPKELGEMDALKEVLKKALIHDGLKRGLHEAAKALDSRRARLCCLAQDCDEPSYSKLVRALCEEHGVNLILVPSGKQLGEWCGLCKIDSLGEARKVVSTSCAVITDFGEETHALNVLLDYLKRQGE 137
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A7S1CEP1_9STRA (40S ribosomal protein S12 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEP1_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.590e-50 Identity = 80/134 (59.70%), Postives = 101/134 (75.37%), Query Frame = 1 Query: 40 ENVTGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGG 441 E T AE + + AL++VLKKAL+ DGL+RGLHE AK LDRGSARLCCLA+DCD P YT+LVRALC G + L+MV +ELG+WAGLCKI EG ATK+V CSC VTDYG++++AL +LL+ +K+ G Sbjct: 14 EEETKAEPEKTGPMDTRTALREVLKKALMHDGLKRGLHEAAKALDRGSARLCCLAEDCDEPNYTRLVRALCSNGGIPLVMVPKGEELGEWAGLCKIDKEGNATKVVKCSCVAVTDYGQESEALSILLDLIKQSG 147
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Match: A0A7S1BMI5_9STRA (40S ribosomal protein S12 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMI5_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.980e-50 Identity = 83/126 (65.87%), Postives = 101/126 (80.16%), Query Frame = 1 Query: 67 EVKEISVLDALKQVLKKALIFDGLRRGLHECAKVLDRGSARLCCLAKDCDNPEYTQLVRALCDEGSVHLIMVDSRQELGQWAGLCKIGLEGEATKIVPCSCAVVTDYGEQTQALGVLLEHLKKGGE 444 E E+SVLDALK+VLKKALI DGL++GLHECAK LD+ SARLCCLAKDC+N EY +L+RAL EG V+LIMVDS +ELG W GL K+G + E K V SCAV+TD+GE+T AL +LL++LKK E Sbjct: 12 ETTEMSVLDALKEVLKKALIHDGLKKGLHECAKALDKRSARLCCLAKDCENEEYKKLIRALAAEGDVNLIMVDSGKELGTWCGLAKLGADLEVKKSVRTSCAVITDFGEETHALNILLDYLKKQAE 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1057.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1057.372.1 >prot_H-paniculata_contig1057.372.1 ID=prot_H-paniculata_contig1057.372.1|Name=mRNA_H-paniculata_contig1057.372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp MVAEDVMAGDGAGENVTGAEVTEVKEISVLDALKQVLKKALIFDGLRRGLback to top mRNA from alignment at H-paniculata_contig1057:20257..22437+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1057.372.1 ID=mRNA_H-paniculata_contig1057.372.1|Name=mRNA_H-paniculata_contig1057.372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2181bp|location=Sequence derived from alignment at H-paniculata_contig1057:20257..22437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1057:20257..22437+ >mRNA_H-paniculata_contig1057.372.1 ID=mRNA_H-paniculata_contig1057.372.1|Name=mRNA_H-paniculata_contig1057.372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig1057:20257..22437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |