mRNA_H-paniculata_contig16517.3715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16517.3715.1
Unique NamemRNA_H-paniculata_contig16517.3715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: D7FJF5_ECTSI (Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF5_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 2.130e-136
Identity = 201/311 (64.63%), Postives = 245/311 (78.78%), Query Frame = 1 
Query:  601 STGVKLDSVKYPISGLLLIREFRSFQEGEEDGERAYLPVDPLVRDLTNFGLPD----APGI-KKPFHETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRRFVAMNNREDNVWGQQEKYMLP-RWPDLFNVSVIVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            S+  +LD +KYP SGLLL  E+R+F E E+DGER Y P+DPLVR L NFG+ D    A G+ KK FHETLVMR T+P HS SW INI P+DH +FEE+LFHFNPRRRFVAMNNRE N+WGQQEK+ML  RWP++FNVS+ V +QID AGFHVA+DGKYCA+FAHRT +PP+GE+L+LQVMT DDY TNL LVVHEIWWGHKDTMPGLPG  KE  P    + + RG +SND+F DLH   LPPM + + E ++R RL D+F PYGA QV+VFHR  K+FGFIKF++H+ AAKALE+L G E++G  +RLS+
Sbjct:  187 SSNPRLDPIKYPASGLLLRDEYRTFAEIEKDGERVYEPLDPLVRLLKNFGIADSNSGADGVAKKQFHETLVMRATIPAHSTSWAINICPKDHKDFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINVAVQIDAAGFHVAVDGKYCATFAHRTKVPPSGEELVLQVMTRDDYDTNLRLVVHEIWWGHKDTMPGLPGRDKE--PNRRTAENWRGSNSNDAFVDLHAAGLPPMPTSDLEESVRKRLIDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSK 495
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A6H5JWU1_9PHAE (Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU1_9PHAE)

HSP 1 Score: 413 bits (1062), Expect = 3.020e-136
Identity = 195/302 (64.57%), Postives = 238/302 (78.81%), Query Frame = 1 
Query:  628 KYPISGLLLIREFRSFQEGEEDGERAYLPVDPLVRDLTNFGLPDAPG-----IKKPFHETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRRFVAMNNREDNVWGQQEKYMLP-RWPDLFNVSVIVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            KYP SGLLL  E+R+F E E++GERAY P+DPLVR L NFG+ D+       +KK FHETLVMR T+P HS SW INI P+DH NFEE+LFHFNPRRRFVAMNNRE N+WGQQEK+ML  RWP++FNVS+ + +QID AGFHVA+DGKYCA+FAHRT +PPN E+L+LQVMT DDY TNL LVVHEIWWGHKDTMPGLPG  KE  P    + + RG +SND+F DLH   LPPM + + + ++R RL D+F PYGA QV+VFHR  K+FGFIKF++H+ AAKALE+L G E++G  +RLS+
Sbjct:   13 KYPASGLLLRDEYRTFAEIEKEGERAYEPLDPLVRLLKNFGIADSNSGADGVVKKQFHETLVMRATIPAHSTSWAINICPKDHKNFEEILFHFNPRRRFVAMNNREGNIWGQQEKHMLSTRWPEVFNVSINLAVQIDAAGFHVAVDGKYCATFAHRTKVPPNDEELVLQVMTRDDYDTNLPLVVHEIWWGHKDTMPGLPGRDKE--PNRRTAENWRGSNSNDAFVDLHAAGLPPMPNSDLQESVRKRLVDMFQPYGAIQVRVFHRESKNFGFIKFREHNDAAKALEELGGAEVHGKPMRLSK 312
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A7S2E642_9STRA (Galectin n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E642_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.570e-23
Identity = 74/257 (28.79%), Postives = 120/257 (46.69%), Query Frame = 1 
Query:  784 HETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRR----FVAMNNREDNVWGQQEKYMLPRWPDLFN-VSVIVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLH-----VGNLPPMRSPEEENAIRARLRDLFDPYG-AYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSRPK 1521
            + TL ++ +VP  S+ +  NI+  +H ++  VLFHFNPR+R     + +N++++  WGQ     L + P +F  VS  + +QI    F V I  K+CA   HRT LP     L  QV + DDYG+    +V+ +WWG KD   G                D  G    + ++ +H     +  L  ++   + +  RA L   F  YG A   KV       F F++ +    A  AL++++       + RL+R +
Sbjct:  109 NNTLAIKFSVPKESRRFSFNIAGPNHGDYNNVLFHFNPRQRQKGGHLVINDKQEGTWGQGINVPLSQIPVIFGQVSCTLILQITGDCFDVFIGDKHCARLDHRTSLPRENCSLHFQVPSTDDYGSLENWIVYRVWWGRKDLKAG----------------DLEGVAGVNQYSSVHPKKLFISGLTKIKHEAQVDLRRAELERAFRKYGGALGCKVTVPTNSTFAFVEVETERQADIALQEMA------HRYRLNRAR 343
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: B8LBZ9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBZ9_THAPS)

HSP 1 Score: 110 bits (275), Expect = 1.560e-21
Identity = 69/256 (26.95%), Postives = 120/256 (46.88%), Query Frame = 1 
Query:  784 HETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRR----RFVAMNNREDNVWGQQEKYMLPRWPDLFNV-SVIVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLH-----VGNLPPMRSPEEENAIRARLRDLFDPYGAYQ--VKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            + TL ++   P  S  + INI+  ++ N+  +LFHFNPR       + +N+R++++WG      L   P +F   +  + +Q+++ GF V ++G +C    +RT+LP     L LQ  ++DDYG      V+ +WWG K++M                + D  G    + ++ +H     V NLP + +  E +  RA L   F  YG  Q  V V       F F++      A  AL +++    N +++  +R
Sbjct:  320 NNTLAIKFNAPEESSRFSINIAGPNNDNYNNILFHFNPRHFQKGGQLVINDRKESMWGNDISVPLSTLPLMFGTHACTLVVQMNEDGFDVFVEGVHCCRLEYRTELPRGKGSLFLQCPSSDDYGNPEDWSVYRVWWGRKESM----------------ARDLNGVAGVNLYSAVHPKKLFVSNLPKLHTDPEVDLRRAELERAFRKYGGPQGAVSVLVPKNSTFAFVEVASEQQADLALLEMA----NKYRVNKAR 555
[Close]
BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A7S2WCV4_9STRA (Galectin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCV4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.020e-20
Identity = 67/248 (27.02%), Postives = 114/248 (45.97%), Query Frame = 1 
Query:  793 LVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRR---FVAMNNREDNVWGQQEKYMLPRWPDLFNVSVI-VGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSRPKG 1524
            LV++  +P  SQ + IN+ P+DH    E++ HFNPR      + +N++ DN WG+  +      P LF      +         ++AIDG     F +R++ P  G  +ILQ+ TADDYG+     V  +WWG    +   P   + +     ++ D        S +D+ VG LP  R   +   + + L +LF        +V     K   F+ F+  ++A  A++     E+ G ++ L+  +G
Sbjct:  167 LVIQAQIPDVSQKYAINLCPKDHRGGSEIMLHFNPRTERGGCLVLNDKRDNDWGRTIRIPAMECPPLFGREECQLTFHFGARHINLAIDGHLYCRFGYRSEPPAEGSDIILQLPTADDYGSPQMWTVKTVWWGPLSDL--APAGRRTKWNGTIKTCDPPTSFLGQS-SDIFVGGLP--RDVADLRKLESALLELFADMRPKHARVVPG--KGIAFVSFESPAAAQGAMDRHKNAELEGRRLILNFSRG 407
[Close]
BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A7S4RA39_9STRA (Galectin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA39_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.010e-18
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1 
Query:  784 HETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRR----FVAMNNREDNVWGQQEKYMLPRWPDLFN-VSVIVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPG 1200
            + TL ++ +VP  S+ +  NI+  +H ++  VLFHFNPR+R     + +N++++  WGQ     L + P +F  +S  + +QI    F V I  K+CA   HRT LP     L  QV + DDYG+    +V+ +WWG KD   G
Sbjct:  293 NNTLAIKFSVPKESRRFSFNIAGPNHGDYNNVLFHFNPRQRQKGGHLVINDKQEGTWGQGINVPLSQIPVIFGQISCTLILQITGDCFDVFIGDKHCARLDHRTSLPRENCSLHFQVPSTDDYGSLENWIVYRVWWGRKDLKAG 436
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A067BYK2_SAPPC (Galectin n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BYK2_SAPPC)

HSP 1 Score: 96.7 bits (239), Expect = 1.570e-17
Identity = 72/257 (28.02%), Postives = 121/257 (47.08%), Query Frame = 1 
Query:  784 HETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRRF---VAMNNREDNVWGQQEKYMLPRWPDLFNVSV----IVGIQIDKAGFHVAIDGKYCASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPGAVKERKPAPARSTDRRGDHSNDSFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSRPKGVTR 1533
            + TLV+  T+P  S  + +N++  D      ++ H NPR+     + +N+  +  WG    +++ R P +F        ++ I I  +GF + +D  +   F H+  L   G+ L+L V T D+YG    +V+H +WWGH D M   P     R   P    D R  H+N    D++VGNLP         A R+ L  LF  +    +++  RG   FGF+  ++ +   +A+ DL G  + G+   L     +T+
Sbjct:  189 NNTLVVNGTIPSSSCRFVLNLATTD----GTIVCHLNPRKMRGGQILLNSFVEGRWGTA--HIVQRCPLIFGSPTPFRFMLRITITPSGFALFVDEVFVDEFKHQIPLR-EGDDLVLNVPTKDEYGNPEVVVLHNVWWGHTD-MAATPARPPPRYNMPG--PDMRMPHNNQF--DVYVGNLP-------SEANRSDLARLFADFTYDYIRITQRG---FGFVALKNAADVDRAVRDLDGVVLPGFTAHLKISAALTK 423
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BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A1E4SLF2_9ASCO (Polyadenylate-binding protein n=1 Tax=Suhomyces tanzawaensis NRRL Y-17324 TaxID=984487 RepID=A0A1E4SLF2_9ASCO)

HSP 1 Score: 61.2 bits (147), Expect = 5.690e-6
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 1 
Query: 1276 SFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGA----YQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            +F ++++ N+P   S E   A       LF PYGA    Y  K      K FGFI F+DH +A KA+++L+ +EING KI + R
Sbjct:  230 NFTNIYIKNIPLDFSEESFKA-------LFQPYGAITSSYLEKDAEGNSKGFGFINFEDHEAAVKAVDELNDKEINGQKIYVGR 306
[Close]
BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A2Z5WH83_CANBO (Polyadenylate-binding protein n=1 Tax=Candida boidinii TaxID=5477 RepID=A0A2Z5WH83_CANBO)

HSP 1 Score: 61.2 bits (147), Expect = 5.740e-6
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1 
Query: 1276 SFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRG----EKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            +F +++  N+ P  S +E          LF+P+GA    V  +      K FGF+ F+DH +AAKA+E+L+ +EING K+ + R
Sbjct:  225 NFTNIYAKNVDPELSDDE-------FAKLFEPFGAITSAVLEKDAAGKSKGFGFVNFEDHEAAAKAVEELNDKEINGKKLYVGR 301
[Close]
BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Match: A0A1L0BZ40_9ASCO (Polyadenylate-binding protein n=1 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0BZ40_9ASCO)

HSP 1 Score: 60.5 bits (145), Expect = 9.810e-6
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1 
Query: 1276 SFADLHVGNLPPMRSPEEENAIRARLRDLFDPYGAYQVKVFHRG----EKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRLSR 1515
            +F ++ V N     S +E       L  LF+PYGA     F +      K FGF+ FQDH +A KA+E+L+ +EING KI + R
Sbjct:  225 NFTNVFVKNFGSDFSEDE-------LTKLFEPYGAITSLYFEKDAEGKSKGFGFVNFQDHEAATKAVEELNDKEINGQKIYVGR 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16517.3715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FJF5_ECTSI2.130e-13664.63Galectin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JWU1_9PHAE3.020e-13664.57Galectin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
A0A7S2E642_9STRA9.570e-2328.79Galectin n=1 Tax=Ditylum brightwellii TaxID=49249 ... [more]
B8LBZ9_THAPS1.560e-2126.95Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2WCV4_9STRA7.020e-2027.02Galectin n=1 Tax=Rhizochromulina marina TaxID=1034... [more]
A0A7S4RA39_9STRA1.010e-1836.11Galectin n=3 Tax=Ditylum brightwellii TaxID=49249 ... [more]
A0A067BYK2_SAPPC1.570e-1728.02Galectin n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A0... [more]
A0A1E4SLF2_9ASCO5.690e-639.29Polyadenylate-binding protein n=1 Tax=Suhomyces ta... [more]
A0A2Z5WH83_CANBO5.740e-635.71Polyadenylate-binding protein n=1 Tax=Candida boid... [more]
A0A1L0BZ40_9ASCO9.810e-639.29Polyadenylate-binding protein n=1 Tax=[Candida] in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16517contigH-paniculata_contig16517:282..5501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score422.9
Seed ortholog evalue2.1e-115
Seed eggNOG ortholog2880.D7FJF5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Galactoside-binding lectin
EggNOG OGs28MKM@1,2QU4C@2759
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-14_006150.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2231
Cds size1527
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16517.3715.1prot_H-paniculata_contig16517.3715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16517 291..4806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.6078095-UTR-H-paniculata_contig16517:281..2901622929315.6078095-UTR-H-paniculata_contig16517:281..290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16517 282..290 +
1691480812.193288-UTR-H-paniculata_contig16517:281..2901691480812.193288-UTR-H-paniculata_contig16517:281..290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16517 282..290 +
1622929315.6988053-UTR-H-paniculata_contig16517:4806..55011622929315.6988053-UTR-H-paniculata_contig16517:4806..5501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16517 4807..5501 +
1691480812.2728271-UTR-H-paniculata_contig16517:4806..55011691480812.2728271-UTR-H-paniculata_contig16517:4806..5501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16517 4807..5501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.6220057-CDS-H-paniculata_contig16517:290..9111622929315.6220057-CDS-H-paniculata_contig16517:290..911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 291..911 +
1691480812.2102106-CDS-H-paniculata_contig16517:290..9111691480812.2102106-CDS-H-paniculata_contig16517:290..911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 291..911 +
1622929315.6362002-CDS-H-paniculata_contig16517:2659..29801622929315.6362002-CDS-H-paniculata_contig16517:2659..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 2660..2980 +
1691480812.2227247-CDS-H-paniculata_contig16517:2659..29801691480812.2227247-CDS-H-paniculata_contig16517:2659..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 2660..2980 +
1622929315.6476681-CDS-H-paniculata_contig16517:3319..34471622929315.6476681-CDS-H-paniculata_contig16517:3319..3447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 3320..3447 +
1691480812.2311685-CDS-H-paniculata_contig16517:3319..34471691480812.2311685-CDS-H-paniculata_contig16517:3319..3447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 3320..3447 +
1622929315.6619122-CDS-H-paniculata_contig16517:3655..37811622929315.6619122-CDS-H-paniculata_contig16517:3655..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 3656..3781 +
1691480812.2395847-CDS-H-paniculata_contig16517:3655..37811691480812.2395847-CDS-H-paniculata_contig16517:3655..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 3656..3781 +
1622929315.6759973-CDS-H-paniculata_contig16517:4143..43591622929315.6759973-CDS-H-paniculata_contig16517:4143..4359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 4144..4359 +
1691480812.248961-CDS-H-paniculata_contig16517:4143..43591691480812.248961-CDS-H-paniculata_contig16517:4143..4359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 4144..4359 +
1622929315.6870434-CDS-H-paniculata_contig16517:4691..48061622929315.6870434-CDS-H-paniculata_contig16517:4691..4806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 4692..4806 +
1691480812.265276-CDS-H-paniculata_contig16517:4691..48061691480812.265276-CDS-H-paniculata_contig16517:4691..4806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16517 4692..4806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16517.3715.1

>prot_H-paniculata_contig16517.3715.1 ID=prot_H-paniculata_contig16517.3715.1|Name=mRNA_H-paniculata_contig16517.3715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=509bp
MCSCNSILQLHYSLMASRAGRRNRKNSDEDYEEVSAAPTSTRPSSNRRAT
ATEDVMDTLTPEEQYLLKVYRLFRKQTPVPPESTNMKRPASPIPPNGVGG
KRPLGSVAATEKLGASRAGAGLGGVSETGTASKTREPSPPPRPAVPQPTD
TATRLKMLLEKKRKEATGPRAGSAAAAAGASIQRKAKINKGSGGSSSSTG
VKLDSVKYPISGLLLIREFRSFQEGEEDGERAYLPVDPLVRDLTNFGLPD
APGIKKPFHETLVMRITVPPHSQSWGINISPQDHHNFEEVLFHFNPRRRF
VAMNNREDNVWGQQEKYMLPRWPDLFNVSVIVGIQIDKAGFHVAIDGKYC
ASFAHRTDLPPNGEKLILQVMTADDYGTNLGLVVHEIWWGHKDTMPGLPG
AVKERKPAPARSTDRRGDHSNDSFADLHVGNLPPMRSPEEENAIRARLRD
LFDPYGAYQVKVFHRGEKDFGFIKFQDHSSAAKALEDLSGEEINGWKIRL
SRPKGVTR*
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mRNA from alignment at H-paniculata_contig16517:282..5501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16517.3715.1 ID=mRNA_H-paniculata_contig16517.3715.1|Name=mRNA_H-paniculata_contig16517.3715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5220bp|location=Sequence derived from alignment at H-paniculata_contig16517:282..5501+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAGTACCATGTGTTCTTGTAACTCCATTCTGCAGCTACATTATTCCCT
GATGGCCAGCCGCGCGGGACGAAGGAATCGGAAAAACTCCGACGAAGACT
ATGAGGAGGTCTCTGCTGCACCGACCTCGACAAGGCCGTCCTCTAATCGA
CGTGCAACAGCAACGGAAGACGTTATGGACACCCTTACCCCCGAAGAGCA
GTATCTCCTCAAAGTGTATCGCCTATTCCGAAAGCAAACGCCAGTCCCTC
CCGAAAGCACAAACATGAAGCGACCGGCGAGCCCCATACCACCCAATGGC
GTCGGCGGGAAAAGGCCCTTGGGATCGGTGGCTGCGACCGAGAAACTCGG
TGCAAGTAGAGCGGGCGCCGGTTTAGGCGGAGTTTCAGAGACTGGAACAG
CCTCTAAGACACGAGAGCCATCGCCGCCGCCGCGGCCAGCGGTGCCCCAG
CCAACCGACACTGCAACTAGGCTGAAGATGCTGCTGGAGAAAAAGAGGAA
AGAGGCGACTGGTCCTAGGGCAGGATCGGCCGCGGCTGCAGCGGGGGCGA
GTATCCAAAGAAAAGCTAAGATCAACAAGGGTTCTGGGGGGTCATCCTCA
TCTACTGGTGTCAAGCTGGATTCAGTCAAGGTAAATCAAGTACCGTATAG
GAGAGTCTATTATTCACTTGTTTTGTCTTTTTGTTTCTTTTGTAAGTGAG
ACAACTACCCGCGATCAGTGGGAGTTCAAGCCTCCTCAACACATGAGCGA
AGGAGAAAACGGAGGCTTTCGCTGTTCGGAATTCATCGAATATGGGATAC
ATTCCGTACCGACAAGGTTTTGATATGCTGGAAGTAGGTAGGACAATAGA
CTGGACAATGTAGGCAACCACCGAGCTCATACGTGTGAAGAAACCCGTCC
AGGGACAGGGTTGGACAATGACTCGAGAAAGACATGAGGTTCAAACTTGG
CCACTCTGGAGCGCACGGGACCCTCTGAAGTACGTGCACCTTCTGGACTT
TTCTTTTATAGAATTTTGTATGGTCAAATATTCCAGAGGGTGCAAATATC
CTGGAGCGTCTTTTTTGGCCCGAATGGGTTACCAAATTGGTCACGTGTGT
TTCGTACAATCCACGGGGTATGGGATATAGCCTGGCGTTGGCAATCATTC
ACTGTACTTAAAGCGTATTTTCTATACTGCAGATCGCATCAACATGAACT
TTGGTATAGCGTAAGCTCAGCTGTGTTTCTACACGTCTAGGAAGGAAAAA
TAGTACCTTATACGAAAACATGGAAATAGGCGAGAAACAAAGCAGCAGCC
TAAAACTCCCTAGCGCTTTTTAATGCCGAGTTTCCCCAATTGATCTCCCC
ATCTTGCTCCAGTGCGTCTCCGCTTCACATGCTTGTTGGTTCATTGGAAA
TCCCCGAATCCGCCTCATTCCAACGTTGGCTATTTTTGAAATATACATAT
TTCATCAAATTAGGTCATTACTTTCAGATAGTGGGCTCTTGGTTTTGTGT
CGTACAAAAACACCAGGTAACTCCTACATCGGACTTATATTGTGGCCCAA
AAAACCATCACCCGTTCGACCTGCATAAAAGTTGTGTCGGGTAATGAATG
AGGCGTTGGGCCCGAATTTTAATCTCACTGTGGTATGCTTATGGCTGCAG
AAAGTACTTGGTTTTCCTCAACGACCAAAAGCAAGAATCCGGCGCTCATA
AGCAACGGCCCTATGGCCTAGAAATGATCAGTCAGTATCACCGTAGAGTC
CACTATGAAAGACAATGAAGTCCCCGAGTTTCATGAAATACGTTGATTTT
TTATTTCTCACCCACCTCGAAACCCGATCACATGCAACCAGGTGCAACTG
AATATTGATACCCATGGGCGCACAACTTTAGGCTGATATAACTGCAAATA
CTGAAGTACTGTACCAAAATTGACCCAAGTTACGAGGTTCTAACCCCAAT
GACGTTGTAGGTAATAGGAAATATGAAGGTAGGTGCTCAGCTGCCTCAGG
CTTTACTCGAAATTCTTGCTGTCTAAAGTGATGTGTATTGCCTCAAAGCC
TCAAACGCAGTGAAGTGAAGGTTGTCCATGGCTCAGGGAGAGCAAATGTC
ACACTACATTGCCTTCACGTCTCGCTGGGGCTGGTCTGGATCGACTGGTT
TCTACTCTATGTCTTCCCTACACGTTGTGTTCGAGCCGTGTATTCCTACT
GACTGGGTAAAGTTACAAAATGTTTGTATCATCCATTCATGCTGCTTGTA
CTGCACTGTTGTGGCACTAGCTTCATGTATCGAGGTCCATGTCTCCATGT
TCTGTATACTTGTTGACAGTATTCCCTCCCATATATGCACCACCCCGTCT
TTCATTTGTTGTGGGTCGTCTACGACAGTATCCTATATCCGGCCTTCTTC
TTATCCGAGAGTTCCGTTCGTTCCAAGAAGGCGAAGAGGATGGAGAACGG
GCATACCTTCCGGTCGATCCTTTGGTCCGGGATCTTACGAACTTTGGTCT
TCCCGACGCCCCCGGCATCAAGAAACCTTTCCACGAGACTCTAGTCATGC
GTATAACAGTACCACCGCATAGTCAATCATGGGGCATTAATATATCTCCA
CAGGATCACCACAATTTCGAAGAGGTCCTTTTCCACTTCAATCCCCGGCG
GAGATTCGTGGCGATGAACAATCGTGAGGACAACGTCTGGGGGCAACAGG
TGCGCACCGAGTAGTGTTCCGCAATATTCAATATCAGCAATGATACCCTG
CAGGTGTTGAAGCGATTTGCACAGCTGCGAAGAGGTAATCTGAAACAAGG
CTCGGGAGGATGTGCAGGAGGAGTCCGGGATGTCGAACCCATGCTGGTGA
ACGTATTGGATGGTAAGGATGGACTAACAATCATCACGCGAATAGTGTTG
ATGGCAATTGAGGCGATCATGTTGGCGGACTAAGTACAACGCCTACGATA
TGGCTTGGCAAGAATGGTTCCATCATGCCCGATGTTTATTCGTCGACCTG
AAGCCATGTTTTCACTTTGTTTCACTGCACTGGAACAGGAGAAATATATG
TTGCCGCGCTGGCCGGATCTCTTCAACGTTTCCGTCATTGTCGGAATCCA
AATCGACAAAGCTGGGTTCCACGTAGCCATCGACGGGAAGTACTGCGCTA
GCTTCGCCCACCGAACGTGAGTGACGACGTCTTTCTTTCTTTCCACATGA
CCATGTTGTCGGACTTTGCTGTCGCAATTGGAATAGACATTATTTCTTGT
CTAGGTATGGGTGCGCGTTCAGGCGTACCCAACCACCACTGTACCATAAG
CAAGCGAAGCGGAAATAATTCGCGGCGTGCGACCTGGAGATTGAGCACTT
GCTGCGGCCACTTATACATTACAGGGATTTGCCCCCAAATGGCGAGAAGC
TGATACTGCAGGTGATGACCGCTGACGACTATGGGACCAATCTAGGACTT
GTGGTGCACGAGATCTGGTGGGGGCACAAGGATACAATGCCGGGTCTTCC
GTAAGTACCAAATGTCGCTGTTGTTCTGATCAGTACGTAGAGGTATCGCC
AGCATCATATTGTCGAGTGCGTACTCTTGAAAAGGGGTAGCTCTCGTTGC
TTTCATTTCGGCCCCAGAGTTGTGTTTTGATTTTAGGGGAAAAAATCCGA
GTCATCCGCATGTGTCCCTATTTTTCGTTGCCCATTGGCAATTTTACTAC
AATACTCTAGAGCGTTTCGTGACTTCGCATCTTCGACAAAGAAAACCGTG
AGGGAAGTTCGTTCACAGTGATCATTGGGGGAAAATGAAAGTTGAAAATA
CTCATGAGGGCATGCCCTGTATCCTGATTATTTTCTGTCTCTTGGTCGTT
GTGGTATTTAAGTGGCGCAGTCAAGGAGCGCAAGCCTGCGCCCGCGCGGT
CAACAGACCGGCGAGGGGATCATTCAAACGATTCGTTTGCCGATTTGCAT
GTCGGCAATCTTCCGCCGATGCGTTCCCCGGAGGAGGAGAATGCGATACG
GGCGAGGCTGAGGGACTTGTTTGACCCATACGGGGCGTATCAAGTGAAGG
TATTTCACCGAGGGGAGAAGGATTTTGGGTGAGTGAAGCGTGAAGCCTTT
CATTATGTGCTTTGAGTGTACAATAGCAAGTTCAATGTTTCAAGGCGATA
TGAAGTACAAGTTGAACAGGATTGGCGGTCAAGAGCAGCATTGTTGTGCT
TGCCGTGCATATAGATGACCTGACGTAGGGAGGGGCTCAGTGCAAATATA
ATTACAAACACATCGGTGAACTGCATGGACTCGTGCACATGAACCGGAAA
TAATGGTGTGGTCGACGGATAAAAGGAAGCAATCTGAGGGGGCGCGGCCG
AATTACATGGAACTGGTTTCATCACCAAACTTGCGCTGTCCTGCTTGTTC
GCCCTTCAAGGTTCATCAAGTTTCAAGACCACAGCAGTGCAGCGAAAGCT
TTGGAGGATTTGAGCGGCGAGGAGATTAACGGCTGGAAAATAAGATTGAG
CAGGCCAAAGGGTGTGACCCGATAGCGTGTCGATACAAGGATAGCGCCTT
CCTGGCGTGCAACATATCGTTTCCAATTGAGCCAAATGGAGAATATGACA
TGCAGACAACTCACTTGCTCGAAAGACAAGAGTGCACCAAAGACCCTTAT
CGTCTGAGCATTACAAGAGAGATGAACATGGGTAGGTCTTAGCACTTGGA
TTTCCAGAGGAAAGTAATAACTGTCAATAGCGGATGATCCAAATTGAGAT
TGGATTGTGTTTTGGGGGATAAACGGATTTTTTATCCTTCCACAATAATG
GTCAAATCGTTCAAAAGTGAATGAGGGGTTTGTCGGTAATGCTTTTTTTC
TAAATGGAGTTAGTGGTCGCTGAGGTAAATACCGTAGCCAGCAAATATAT
AGTATGTGTGGCTGGTAAGGCCGTTCCATGTGGGCATTGAAAATTGATTT
TCGACAGTGTCTAGATTTTCGTTTATTCGCTAGCAGTTTGAATTTAGTAA
AAATTTGGTTTCGAAGGCAAAAATCGAACGCTCGTAAGGAACGGCTCAAC
ATTTTTCTGCCTTTTCATGTTTCGTGCTATCTCCAGGTTGGCTTGTCCAT
ATTCATCAGTCAGATAAATGGGAAACGTAGCGCGTGTTCACCAAGCTTAG
GCGAACCCTCTTTTTGCACGCTGTTTGTGCGTGGTGTCTTCTAATATTCC
TCACGAGCTTCCAAGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16517:282..5501+

>mRNA_H-paniculata_contig16517.3715.1 ID=mRNA_H-paniculata_contig16517.3715.1|Name=mRNA_H-paniculata_contig16517.3715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3054bp|location=Sequence derived from alignment at H-paniculata_contig16517:282..5501+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTCTTGTAACTCCATTCTGCAGCTACATTATTCCCTGATGGCCAG
CCGCGCGGGACGAAGGAATCGGAAAAACTCCGACGAAGACTATGAGGAGG
TCTCTGCTGCACCGACCTCGACAAGGCCGTCCTCTAATCGACGTGCAACA
GCAACGGAAGACGTTATGGACACCCTTACCCCCGAAGAGCAGTATCTCCT
CAAAGTGTATCGCCTATTCCGAAAGCAAACGCCAGTCCCTCCCGAAAGCA
CAAACATGAAGCGACCGGCGAGCCCCATACCACCCAATGGCGTCGGCGGG
AAAAGGCCCTTGGGATCGGTGGCTGCGACCGAGAAACTCGGTGCAAGTAG
AGCGGGCGCCGGTTTAGGCGGAGTTTCAGAGACTGGAACAGCCTCTAAGA
CACGAGAGCCATCGCCGCCGCCGCGGCCAGCGGTGCCCCAGCCAACCGAC
ACTGCAACTAGGCTGAAGATGCTGCTGGAGAAAAAGAGGAAAGAGGCGAC
TGGTCCTAGGGCAGGATCGGCCGCGGCTGCAGCGGGGGCGAGTATCCAAA
GAAAAGCTAAGATCAACAAGGGTTCTGGGGGGTCATCCTCATCTACTGGT
GTCAAGCTGGATTCAGTCAAGATGTGTTCTTGTAACTCCATTCTGCAGCT
ACATTATTCCCTGATGGCCAGCCGCGCGGGACGAAGGAATCGGAAAAACT
CCGACGAAGACTATGAGGAGGTCTCTGCTGCACCGACCTCGACAAGGCCG
TCCTCTAATCGACGTGCAACAGCAACGGAAGACGTTATGGACACCCTTAC
CCCCGAAGAGCAGTATCTCCTCAAAGTGTATCGCCTATTCCGAAAGCAAA
CGCCAGTCCCTCCCGAAAGCACAAACATGAAGCGACCGGCGAGCCCCATA
CCACCCAATGGCGTCGGCGGGAAAAGGCCCTTGGGATCGGTGGCTGCGAC
CGAGAAACTCGGTGCAAGTAGAGCGGGCGCCGGTTTAGGCGGAGTTTCAG
AGACTGGAACAGCCTCTAAGACACGAGAGCCATCGCCGCCGCCGCGGCCA
GCGGTGCCCCAGCCAACCGACACTGCAACTAGGCTGAAGATGCTGCTGGA
GAAAAAGAGGAAAGAGGCGACTGGTCCTAGGGCAGGATCGGCCGCGGCTG
CAGCGGGGGCGAGTATCCAAAGAAAAGCTAAGATCAACAAGGGTTCTGGG
GGGTCATCCTCATCTACTGGTGTCAAGCTGGATTCAGTCAAGTATCCTAT
ATCCGGCCTTCTTCTTATCCGAGAGTTCCGTTCGTTCCAAGAAGGCGAAG
AGGATGGAGAACGGGCATACCTTCCGGTCGATCCTTTGGTCCGGGATCTT
ACGAACTTTGGTCTTCCCGACGCCCCCGGCATCAAGAAACCTTTCCACGA
GACTCTAGTCATGCGTATAACAGTACCACCGCATAGTCAATCATGGGGCA
TTAATATATCTCCACAGGATCACCACAATTTCGAAGAGGTCCTTTTCCAC
TTCAATCCCCGGCGGAGATTCGTGGCGATGAACAATCGTGAGGACAACGT
CTGGGGGCAACAGTATCCTATATCCGGCCTTCTTCTTATCCGAGAGTTCC
GTTCGTTCCAAGAAGGCGAAGAGGATGGAGAACGGGCATACCTTCCGGTC
GATCCTTTGGTCCGGGATCTTACGAACTTTGGTCTTCCCGACGCCCCCGG
CATCAAGAAACCTTTCCACGAGACTCTAGTCATGCGTATAACAGTACCAC
CGCATAGTCAATCATGGGGCATTAATATATCTCCACAGGATCACCACAAT
TTCGAAGAGGTCCTTTTCCACTTCAATCCCCGGCGGAGATTCGTGGCGAT
GAACAATCGTGAGGACAACGTCTGGGGGCAACAGGAGAAATATATGTTGC
CGCGCTGGCCGGATCTCTTCAACGTTTCCGTCATTGTCGGAATCCAAATC
GACAAAGCTGGGTTCCACGTAGCCATCGACGGGAAGTACTGCGCTAGCTT
CGCCCACCGAACGAGAAATATATGTTGCCGCGCTGGCCGGATCTCTTCAA
CGTTTCCGTCATTGTCGGAATCCAAATCGACAAAGCTGGGTTCCACGTAG
CCATCGACGGGAAGTACTGCGCTAGCTTCGCCCACCGAACGGATTTGCCC
CCAAATGGCGAGAAGCTGATACTGCAGGTGATGACCGCTGACGACTATGG
GACCAATCTAGGACTTGTGGTGCACGAGATCTGGTGGGGGCACAAGGATA
CAATGCCGGGTCTTCCGGATTTGCCCCCAAATGGCGAGAAGCTGATACTG
CAGGTGATGACCGCTGACGACTATGGGACCAATCTAGGACTTGTGGTGCA
CGAGATCTGGTGGGGGCACAAGGATACAATGCCGGGTCTTCCTGGCGCAG
TCAAGGAGCGCAAGCCTGCGCCCGCGCGGTCAACAGACCGGCGAGGGGAT
CATTCAAACGATTCGTTTGCCGATTTGCATGTCGGCAATCTTCCGCCGAT
GCGTTCCCCGGAGGAGGAGAATGCGATACGGGCGAGGCTGAGGGACTTGT
TTGACCCATACGGGGCGTATCAAGTGAAGGTATTTCACCGAGGGGAGAAG
GATTTTGGTGGCGCAGTCAAGGAGCGCAAGCCTGCGCCCGCGCGGTCAAC
AGACCGGCGAGGGGATCATTCAAACGATTCGTTTGCCGATTTGCATGTCG
GCAATCTTCCGCCGATGCGTTCCCCGGAGGAGGAGAATGCGATACGGGCG
AGGCTGAGGGACTTGTTTGACCCATACGGGGCGTATCAAGTGAAGGTATT
TCACCGAGGGGAGAAGGATTTTGGGTTCATCAAGTTTCAAGACCACAGCA
GTGCAGCGAAAGCTTTGGAGGATTTGAGCGGCGAGGAGATTAACGGCTGG
AAAATAAGATTGAGCAGGCCAAAGGGTGTGACCCGATAGGTTCATCAAGT
TTCAAGACCACAGCAGTGCAGCGAAAGCTTTGGAGGATTTGAGCGGCGAG
GAGATTAACGGCTGGAAAATAAGATTGAGCAGGCCAAAGGGTGTGACCCG
ATAG
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