mRNA_H-paniculata_contig16516.3714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 110 bits (274), Expect = 4.130e-27 Identity = 61/127 (48.03%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
GYVF + GAI+WCSR+QQ + S+TE EYVAA EA KE ++L LL I + + L+ N+SAI + K H R KHI R H I+E + G + ++YV++ DQLAD LTK L VKF LR
Sbjct: 121 GYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI) HSP 1 Score: 109 bits (273), Expect = 1.110e-26 Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 4 YVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIG---FGCMGSTT----LFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVK 366
YVFKL GGAISWCSRKQQ + SSTE EYVA A KE ++L LL + F + S + N+SA+ ++K S H R KHI R H IR+ + G L ++YV TGDQ+AD LTK L+R K
Sbjct: 146 YVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREK 273
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: H3G5F6_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5F6_PHYRM) HSP 1 Score: 104 bits (260), Expect = 1.850e-26 Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGL 354
GYVF LNG AISW S++Q V SSTE EY+A A +E V+L +LL +G C+G+TT+F+ N+ I ++K H R KHI + H +RE V + V+ L+Y T + +AD TK L
Sbjct: 5 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHILREKVEDKVIVLEYNPTDEMIADGFTKAL 122
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM) HSP 1 Score: 110 bits (274), Expect = 4.100e-26 Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLAD 336
G+VFK+ GAISW S+KQ SST+ EYVA A KE V+L L I C G TTLF N+SA+ I++ H R KHIG R H +RE V +G L LKY+ TGDQ+AD
Sbjct: 273 GFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMAD 384
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A8H7CY76_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7CY76_9AGAR) HSP 1 Score: 109 bits (273), Expect = 4.490e-26 Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILRILL 390
GY F L GAISW S+KQ +VT SSTE+EYVA A KE ++L +LL + G TTLF N+ AI +S+ S H R KHI R H IR+ +R G ++ Y T D +AD TK L+R K + R LL
Sbjct: 230 GYTFFLGNGAISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPTGPTTLFCDNQGAIVLSRDSTYHARTKHIDIRFHFIRQTIRHGHASVTYCSTHDMIADVFTKSLTRAKIEKFRDLL 359
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 108 bits (269), Expect = 7.240e-26 Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVK 366
GYVF LNG AISW S++Q V SSTE EY+A A +E V+L +LL +G C+G+TT F+ N+ I ++K H R KHI + H +RE V + V+ L+Y T + +AD TK L+R K
Sbjct: 179 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPK 300
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C) HSP 1 Score: 105 bits (262), Expect = 8.850e-26 Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
GYVF LNG AISW +KQ+ S+TE E+VA+ EAGKE V++ L + LF N+SAI I + H R KHI R H IRE +GV+ KYV T +QLAD LTK L+ +FQ LR
Sbjct: 71 GYVFLLNGAAISWSGKKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLR 197
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 110 bits (274), Expect = 1.130e-25 Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
GYVF L+GGA++W SRKQ +VT SSTE EYVAA + +++ +LG IGF TLF N S I +SK + H + KHI R H +RE +EG++ L + T +QLAD +TK L FQ +R
Sbjct: 356 GYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 108 bits (269), Expect = 1.220e-25 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
G+ F GGA+SW S+KQ +VT S+TE EYVAA + V++ +L IGFG T LF N SAI +SK H R KHI R H +RE V EG+++ +Y T +QLAD +TK + F+ LR
Sbjct: 208 GFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKLR 334
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1Y1L8J7_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L8J7_PHOPY) HSP 1 Score: 103 bits (258), Expect = 1.890e-25 Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILRILLV 393
GYV GG ISWCSRKQ +V+ SSTE EY+AA + KE ++L L+ + S TL N+SAI + K + R KHI R H + E VREGVL +KY T +Q+AD TK L + KF + + LL+
Sbjct: 50 GYVIYFCGGPISWCSRKQPIVSLSSTEAEYIAAADCVKELLFLKSLIEEL-INTKVSKTLNVDNQSAIQLMKSGQFNRRSKHIDVRFHFLCEKVREGVLEVKYCPTNNQIADIFTKALGKQKFNVFKELLL 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16516.3714.1 >prot_H-paniculata_contig16516.3714.1 ID=prot_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIback to top mRNA from alignment at H-paniculata_contig16516:37..432+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16516.3714.1 ID=mRNA_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig16516:37..432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16516:37..432+ >mRNA_H-paniculata_contig16516.3714.1 ID=mRNA_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig16516:37..432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |