mRNA_H-paniculata_contig16512.3712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16512.3712.1
Unique NamemRNA_H-paniculata_contig16512.3712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 8.780e-47
Identity = 95/184 (51.63%), Postives = 118/184 (64.13%), Query Frame = 2 
Query: 3053 PFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            PFRE VGSLMW+AN +RPDIS+AVR  ARH+H     HWKA  +I+ YL GT + T         ++   VY D+++ASKA DR SVSG  + V  C V + SRT   V LSTTEAEY AMG GVKE + V  ML F  P  ++G I+V EDNEG+I L +N LSS  +KH DVR  F  +L +
Sbjct:   10 PFREVVGSLMWIANQTRPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLVYVDANFASKATDRRSVSGARVLVADCLVGWISRTQRCVILSTTEAEYVAMGDGVKEALFVNGMLEFLRPSDRIGMIQVREDNEGAIALNENPLSSCNSKHFDVRHHFLRNLTE 193
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.650e-46
Identity = 98/193 (50.78%), Postives = 124/193 (64.25%), Query Frame = 2 
Query: 3026 IEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +EDEE    PFRE VG LMW+AN +RP+ S+AVR  ARH+H P    WKA  +I++YL  T + T         ++   VY D+ +ASKA DR SVSG ++ V  C VS+F+ T   VSLST+EAEY AMG GVKE + V  ML F  P  K   I V EDNEG+I LA+N LSS+R+KHIDVR  F  +L +
Sbjct:   58 MEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTE 250
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.670e-46
Identity = 99/198 (50.00%), Postives = 125/198 (63.13%), Query Frame = 2 
Query: 3026 IEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRT-----DGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +EDEE    PFRE VG LMW+AN +RPDIS+AVR  ARH+H P    WKA  +I+ YL  T + T     D  +     ++   VY D+ +ASKA DR SVSG ++ V  C V++ S T   VS ST+EAEY AMG GVKE + V  ML F  P ++   I VLEDNEG+I LA+N LSS R+KHIDVR  F  +L +
Sbjct:    7 MEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYLLATAHLTLKYKRDSTV----DDVGTLVYVDADFASKATDRRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTE 200
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 7.390e-46
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 2 
Query: 3029 EDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSL 3598
            +DE    WP REA+GS+MW++  SRPDIS AVR  ARH H P   HWKA+++I+AYL  T  R  G  +++G  + + VY D+SYA  A+DR SVSG   TVG   +S+ S+T   VSLS+TEAEY A G GVKE + VR +L F  PE    +I+VLEDN+G++ L +N LSSAR+KHIDVR  F   L
Sbjct:  281 DDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKET--RDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGL 467
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.200e-45
Identity = 100/199 (50.25%), Postives = 128/199 (64.32%), Query Frame = 2 
Query: 3011 SDYWSI-EDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +DY S+ EDE     PFRE VGSLMW+AN +RPDIS+AVR  ARH+H P   H KA  +I+ YL    + T         ++   VY D+ +ASKA DR SVSG ++ V  C V++ SRT   V+LSTTEAEY AMG GVKE + V+ ML F  P  ++G I+V EDNEG+I LA+N LSS  +KHIDV   F  +L +
Sbjct:  138 NDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLEAAHLTLKYKQDTMVDVGTLVYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRNLTE 336
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.580e-45
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 2 
Query: 3029 EDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSL 3598
            +DE    WP REA+GS+MW++  SRPDIS AVR  ARH H P   HWKA+++I+AYL  T  R  G  +++G  + + VY D+SYA  A+DR SVSG   TVG   +S+ S+T   VSLS+TEAEY A G GVKE + VR +L F  PE    +I+VLEDN+G++ L +N LSSAR+KHIDVR  F   L
Sbjct:  368 DDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKET--RDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGL 554
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.750e-45
Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 2 
Query: 2975 ARGLLANLPFRISDYWSIEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSL 3598
            ARGL    P R       +DE     P REA+GS+MW++  +RPDI  AVR  ARH H P   HWKA+++I+AYL  T  R  G  +K+G  + + VY D+SYA  A+DR SVSG   TVG   +S+ S+T   VSLS+TEAEY A G GVKE + VR +L F  PE    +I+VLEDN+G++ L +N LSSAR+KHIDVR  F   L
Sbjct:  142 ARGLTPQGPKR-------DDESGGERPVREAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKET--RDLGITYKRGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGL 339
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.820e-45
Identity = 100/195 (51.28%), Postives = 126/195 (64.62%), Query Frame = 2 
Query: 3026 IEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSV--TVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +E+E     PFRE VGSLMW+A+ +R DIS+AVR  ARH+H P   HWKA  +I+ YL  T + T    FK+   + V   VY D+ +ASKA DR SVSG ++ V    V + SRT   VS ST+EAEY AMG GVKE + V  ML F  P +K   I VLEDNEG+I LA+N LSS+R+KHIDVR  F  +L +
Sbjct:   26 MEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLK--FKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTE 218
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.740e-45
Identity = 99/193 (51.30%), Postives = 123/193 (63.73%), Query Frame = 2 
Query: 3026 IEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +EDEE    PFRE VG LMW+AN +RP+ S+AVR  ARH+H P    WKA  +I++YL  T + T         ++   VY D+ +ASKA DR SVSG ++ V  C VS+FS T   VSLST+EAEY AMG GVKE   V  ML F  P  K   I V EDNEG+I LA+N LSS+R+KHIDVR  F  +L +
Sbjct:  153 MEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTE 345
[Close]
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.040e-44
Identity = 100/199 (50.25%), Postives = 130/199 (65.33%), Query Frame = 2 
Query: 3011 SDYWS-IEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWKAVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGGVITVG*CTVSYFSRTSNTVSLSTTEAEYTAMGGGVKEGILVRNMLGFTVPEIKLGTIKVLEDNEGSIQLAKNHLSSARTKHIDVRITFYVSLKQ 3604
            +DY S IEDE     PFR+ VGSLMW+AN +RPDIS+AVR  ARH+H P   HWKA  +I+ YL  T + T         ++   VY D+ +AS+A DR S SG ++ V  C V++ SRT   V+LSTTEAEY AMG GVKE + V+ ML F  P  ++G I+V EDNEG+I LA+N LSS  +KHIDVR   + +L +
Sbjct:  423 NDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTE 621
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16512.3712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA29_9PHAE8.780e-4751.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTP8_9PHAE1.650e-4650.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8M4_9PHAE1.670e-4650.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE7.390e-4652.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGA6_9PHAE1.200e-4550.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE1.580e-4552.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.750e-4549.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE1.820e-4551.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE3.740e-4551.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE1.040e-4450.25Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16512contigH-paniculata_contig16512:142..4931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.9
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog7029.ACYPI062055-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3CNH1@33208,3DKAJ@33213,3EECK@33342,3SZW4@50557,42AEX@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons3
Model size3861
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16512.3712.1prot_H-paniculata_contig16512.3712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16512 663..2196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.4385633-UTR-H-paniculata_contig16512:141..6621622929315.4385633-UTR-H-paniculata_contig16512:141..662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 142..662 -
1691480812.1238873-UTR-H-paniculata_contig16512:141..6621691480812.1238873-UTR-H-paniculata_contig16512:141..662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 142..662 -
1622929315.47714-UTR-H-paniculata_contig16512:2196..34711622929315.47714-UTR-H-paniculata_contig16512:2196..3471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 2197..3471 -
1691480812.1526327-UTR-H-paniculata_contig16512:2196..34711691480812.1526327-UTR-H-paniculata_contig16512:2196..3471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 2197..3471 -
1622929315.488625-UTR-H-paniculata_contig16512:3484..49311622929315.488625-UTR-H-paniculata_contig16512:3484..4931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 3485..4931 -
1691480812.162111-UTR-H-paniculata_contig16512:3484..49311691480812.162111-UTR-H-paniculata_contig16512:3484..4931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16512 3485..4931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.4526405-CDS-H-paniculata_contig16512:662..9811622929315.4526405-CDS-H-paniculata_contig16512:662..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16512 663..981 -
1691480812.134544-CDS-H-paniculata_contig16512:662..9811691480812.134544-CDS-H-paniculata_contig16512:662..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16512 663..981 -
1622929315.4651232-CDS-H-paniculata_contig16512:1897..21961622929315.4651232-CDS-H-paniculata_contig16512:1897..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16512 1898..2196 -
1691480812.1433446-CDS-H-paniculata_contig16512:1897..21961691480812.1433446-CDS-H-paniculata_contig16512:1897..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16512 1898..2196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16512.3712.1

>prot_H-paniculata_contig16512.3712.1 ID=prot_H-paniculata_contig16512.3712.1|Name=mRNA_H-paniculata_contig16512.3712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MKDSSTTTRALSMRVAQNRAMSTTSAALESGTPPRSHYFRVYEIADLHFT
GATGRPDGIKMAAGRTTRARAAQLEEEAATQEQLARGLLANLPFRISDYW
SIEDEEQCSWPFREAVGSLMWLANISRPDISSAVREAARHNHNPGPEHWK
AVMQIMAYLAGTINRTDGNIFKKGGEMSVTVYADSSYASKADDRWSVSGG
VITVG*
back to top

mRNA from alignment at H-paniculata_contig16512:142..4931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16512.3712.1 ID=mRNA_H-paniculata_contig16512.3712.1|Name=mRNA_H-paniculata_contig16512.3712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4790bp|location=Sequence derived from alignment at H-paniculata_contig16512:142..4931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGGTAGGGTAGCTCGTTTACTGAGCATGACTGGAAGTCTAGTCAGAG
GTCTTTTAGTAGGTGAAACTCCTACACTGCCTACTTGGTTCGGCCGAACC
GGGGTGGCACCTACCCCCCAGACGAATATATAACTCTGTTCTATTAAAGG
AAATGTAGACATGTTCGGGCGAAGGCCTGGATGTGGAAGCAGCGGAAAAG
GTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAAGAAAAAACGTCGTGGGA
CCAACGAGGGAGGAGGCCTCGACGTCAGCGGCGCACGTACGATCACCTGG
ACATGACAGAGTCCACAGCACCGCACAGGCGACAGTTGCTTGAGAGGAGC
AACGGCATGGTGTCGCTGCGGGTGACAGGTGTACCCAAAATGAAGTGCAG
TTTGATTTATAACACCGATCTGAGACAAATCGCGATGGGGTACAGAAATG
TTATGTCAAATACCGAGATAATCAACTTGATCCGGGCGAATCGGCGAATT
GGCTAGACTTCAAACGCAAGCCTTTACAGACATTCACTATGTATGATTTC
AGAGACGGACTCACAGGGGATCAAGATATATCTGTTGGTAAAATAACGGA
TCCACGAGATATCGAAACGCTATCCTAGAGGTTTAACATCGGCTCTATCT
TCGAAAATGACTCGCACACCCCTTCCTGAGTACATGCATCAAAGACAAAG
TTTCGCGAGCTATGGTTGATCAAGCAGGCAGCCCAACAACAGCATAGCAG
AAGCTAGAGAGCGTTTTTCAGCCCAAAACGATAACAGAACGGCAAAGATG
CTTGCATGAGTGCAACTCGTACAGGATACCCAGGGGAGCTAACCCTGCGG
AAGCAGAAGTCCAGATCTTACACCTTACAGATCATATCCACACCATGAAT
CCTACTACCAAAATTTCAGACCAACAAGTGAACCATGCATTGTTGACAGC
AATGCCGCCAGAATACTATCCAAATATTCATTTGCTCTTTATTAAAGAAG
CAGGCACTAAGCTCGATTGTGAGAAAATCTTTACCAAACTTCAAGCGCGG
TACCAGTATCTCGACAAAATGCGCAATTCCCGTGGGAAGGGAGCTTTTCT
CACGGGCTTCGGCGGGCGATTTGACAATCGTCGAAATTTCAACAACGCAC
AGTGGAATCGGGAGCGGGGGACACGCGGCCGAGAAGGACAACCAGGTTAA
TTCAGGAGCGGAGCCCTCTCACAACATCAGTGACAGCCAGCAAGTTGCTC
AACAGGACAGCGGAGGACCGCAGTCTTCGTCAGCCACGATAAAAAATCAC
CACCCTCCGATCTGCTTCAACTGCAACCAGACCGGGCACTTCAGTAGGAG
CTGCCCATGGCGTCTTTTCTGCCAACGATGCCGAGGGCAGGGGCACAAGA
CTAACGACTGCGTAACTCCAGCCAACACCTTTAACAACGCACCAGCAGCC
ATGGCCGCAGTTCCTTGGCAACGAGATCCTGGAGAGGACGTCGCGAGTTA
GTGATTGCCTGCTCTAAGGAGAAGACAGCGTTTATGGCTGAGGTAGATGT
TTTCAACGGTTTAGAAACTTGAGTTGCAGACAGCGAGGTTTCTGAATCCA
TGATCCCGAAGGCTGAAAGCATGGTGAACTTCGTGGAGCGTGACACCTTC
ATGTGCAACGCAAATTGGGTAAAGTTCACTGTACGAGGCTGCAGAGACCT
GGCGATGACCCTGGCGATGACCCTGGCGAGTCGCGACGGCGGATGGTAAT
CGGTAAATTGGGCAAAGCTGAGCTTGTGACTGTGTGGAGTTAAAGGCAGC
TTGTGAATCATTAGCAATAGTCCGCTCCCATATCCGACCATAAATCCCCG
ATACATATCCATCACACTATGCTACGAGTATATCCAACAGATGGAATCAG
GTCTATTTCTGAAATGTTGCTTCCGTTCCTTCCCTTGCCTACAATTCGCC
TTCCTTGAACTCAGTGACAGACAAGGGCCACGAATACGTCGGTCGCAGGG
ATGACATCACGCTGTAATTTTCAGGTGGAGGTGATATCCACTTTCCCGCG
AAAGGTAGTCAACGCGCAATTCAGGAGTTTCGCCAGTAGACCAAAAAAAG
ACATATCCTCGCCAACGCAGTTCTATCCAAAGGTCAAGCACCACCAGGTA
GTGTAAACATGAACGTTTTTCACGCCAGCTATGGACATGCTCACGAGGCC
GTCCGATGTGAAACCGCAAAAAGAATGGGAGTGACTCTCCGGGAAGCGCT
GAAGCTATGTGAGGGGTGTCCACTAGGAAAAGGGCTCATAAAGGTATTTT
CTCTAAGACGCTAAGTAGAGCAGAGAAAAACTAGCGAGAGTGGTCGTTGG
TTTAAGTGGACCTAAAAATCCAGTTTCGCAGGGAGGAAAAACTGCGACCA
TGTGTCCGCCTCCACCATGCACCCTTTCCTCAGACCAGGTTTTTGCAAAG
TCAAGACCAACAACAAATTAGATCCTAGAGCAGAAGAATATTTTTATCAT
ACCCTTGCTCCCAACATGCCCAACGATATTTTGAGAGTGCTCAAACGTAA
CGGTCAGGTAGCTACTTGAAATGTAACATGACGCAATGTCCAGTCTTTCC
TTCCTACCCCAGTGCCTGTTGATCATGATATCTTGGAGCTGGATTACCGC
ATTTTTTAGGACTCCAAGAACAGCGCCGATATGAGCAGCCCCGACGAGTA
AGCGGTTGCACACGGCAACACCAAAGACGAAGCCGATGAAAGACTCTTCG
ACGACTACAAGAGCCTTATCGATGAGAGTGGCCCAGAACAGAGCAATGTC
CACGACATCGGCAGCATTGGAGAGCGGAACTCCACCAAGGTCCCACTATT
TTCGTGTATATGAGATCGCCGATCTTCACTTCACTGGCGCAACGGGCCGT
CCCGACGGCATCAAAATGGCAGCTGGAAGAACGACAAGAGCCCGAGCAGC
ACAACTAGAAGAAGAGGCTGCCACCCAGGAACAACTGGCGAGAGGACTCT
TGGCGAATTTGCCATTCCGTATTTCGGACTACTGGTACGCAACATGCTGG
ACATTAGAATATCAGGAAACTTACATCACGAAGTACCATTTTCCCACATA
TCAGAGGTAGAACTCGCTCCATCTAATTTCAAGAAGACAGTAAGTTGTGA
ACACAGCTATGACACAATGCCATGACCACAGAATACGAAGATTTGGTACG
AACAGCTACTTTTAGTCGGGAAAATCCGTCCGATAATAGTAAATCAATCA
ATTTCATATGGATATATATGTAAAAAAGAGACCCTGATGGCACGGTAACG
GGTGCAAAGGCTAGACTAGTGGCCCATGGAGACAAGCAAGTTCGAGGTCT
AGACTATGATGATACAGTCACACCAGCACCATCAATTGCTACCGTAAAAA
CAGGCGCGGCAGTAGCAAATGAGCTAGACCTGAGCATATTTCATTGGGAT
GTATCACAGGCACTTTGTGCAGGGCAAGTTGGAAGAAGACATCTGTCTAC
GTTTGGCCGAAGGCTGCCGAGCAGCTTCAGGCAAAGTTGTATAACTAAAA
TGGTCGATATACGGACTTGAGAAGGCATCGAGAACATGGCATACTCTACT
TGCCAACACGCTCAAAGAGAAAGGATTCCAGCAATGTCTCACTGATCCGT
GCTTGTTCCGCAGAATTTCAGATACACAAGTCGAAACTTTGATTATCGTA
CATGTGGGTGACATGATGGTAATCGACAGCAAGAGGGTCTGTGACAAGAT
CTATGAAAACCTCAGTCAGCATTCCCCCACAAAACATTTGGAAGAGCTAA
AGTGGTACATGGGGTCCTCTGCCACACAGTGAACGACAAACATTTCCCCA
CGAAAAATATCACAGACTAACCCTTCATTGATACAGTTTGCCAGCGTTTC
AATGTAACTTCAGCAAGCCCAATACCCGCTAACCCCACTACTGTCCTCAG
GTCAATTGAAGACGAGGAGCAGTGCAGCTGGCCGTTCAGAGAGGCAGTCG
GCAGTTTAATGTGGCTAGCCAACATCAGCAGACCGGACATCAGCAGCGCA
GTTCGGGAAGCAGCTCGGCACAACCACAATCCTGGTCCTGAACACTGGAA
GGCAGTGATGCAGATTATGGCCTACCTTGCGGGGACTATTAATAGGACCG
ACGGGAATATTTTCAAGAAGGGAGGGGAAATGAGTGTAACTGTATACGCA
GACTCTAGCTACGCTAGTAAGGCCGATGACAGATGGTCGGTATCAGGAGG
TGTCATCACAGTCGGATAGTGCACCGTAAGTTATTTTTCCAGAACGTCAA
ACACGGTATCTCTTTCGACCACTGAAGCTGAGTATACTGCGATGGGAGGT
GGCGTTAAGGAAGGGATACTCGTTCGGAATATGCTTGGATTCACGGTTCC
CGAGATTAAACTGGGGACAATCAAGGTTCTGGAGGACAACGAGGGGTCCA
TTCAACTAGCTAAAAACCATCTCAGTTCGGCGCGAACCAAACACATTGAC
GTGCGCATCACCTTTTACGTGAGCTTGAAGCAAGGAAGAAATTGGTAATC
GAACTACTGAGCAACACACTGCAACATGAAAACGTACTTACCAAAGCGCT
GCCACGTGTGACCTTCTTGTTTCATGTACGTGCCATCATGAATACGGATA
TAGACACGAAAAGATAAGGGTTTTTATACAAAACAAATTGCGCCTTTAAC
AATATGTTGGTGAAATGAGGAACCAATTTTCTAGATGAGGAACGGGTCCT
ATACTGAAAACGTCTTACTTGCCCCCGATCGATTAACGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16512:142..4931-

>mRNA_H-paniculata_contig16512.3712.1 ID=mRNA_H-paniculata_contig16512.3712.1|Name=mRNA_H-paniculata_contig16512.3712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig16512:142..4931- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTCTTCGACGACTACAAGAGCCTTATCGATGAGAGTGGCCCA
GAACAGAGCAATGTCCACGACATCGGCAGCATTGGAGAGCGGAACTCCAC
CAAGGTCCCACTATTTTCGTGTATATGAGATCGCCGATCTTCACTTCACT
GGCGCAACGGGCCGTCCCGACGGCATCAAAATGGCAGCTGGAAGAACGAC
AAGAGCCCGAGCAGCACAACTAGAAGAAGAGGCTGCCACCCAGGAACAAC
TGGCGAGAGGACTCTTGGCGAATTTGCCATTCCGTATTTCGGACTACTGA
TGAAAGACTCTTCGACGACTACAAGAGCCTTATCGATGAGAGTGGCCCAG
AACAGAGCAATGTCCACGACATCGGCAGCATTGGAGAGCGGAACTCCACC
AAGGTCCCACTATTTTCGTGTATATGAGATCGCCGATCTTCACTTCACTG
GCGCAACGGGCCGTCCCGACGGCATCAAAATGGCAGCTGGAAGAACGACA
AGAGCCCGAGCAGCACAACTAGAAGAAGAGGCTGCCACCCAGGAACAACT
GGCGAGAGGACTCTTGGCGAATTTGCCATTCCGTATTTCGGACTACTGGT
CAATTGAAGACGAGGAGCAGTGCAGCTGGCCGTTCAGAGAGGCAGTCGGC
AGTTTAATGTGGCTAGCCAACATCAGCAGACCGGACATCAGCAGCGCAGT
TCGGGAAGCAGCTCGGCACAACCACAATCCTGGTCCTGAACACTGGAAGG
CAGTGATGCAGATTATGGCCTACCTTGCGGGGACTATTAATAGGACCGAC
GGGAATATTTTCAAGAAGGGAGGGGAAATGAGTGTAACTGTATACGCAGA
CTCTAGCTACGCTAGTAAGGCCGATGACAGATGGTCGGTATCAGGAGGTG
TCATCACAGTCGGATAGGTCAATTGAAGACGAGGAGCAGTGCAGCTGGCC
GTTCAGAGAGGCAGTCGGCAGTTTAATGTGGCTAGCCAACATCAGCAGAC
CGGACATCAGCAGCGCAGTTCGGGAAGCAGCTCGGCACAACCACAATCCT
GGTCCTGAACACTGGAAGGCAGTGATGCAGATTATGGCCTACCTTGCGGG
GACTATTAATAGGACCGACGGGAATATTTTCAAGAAGGGAGGGGAAATGA
GTGTAACTGTATACGCAGACTCTAGCTACGCTAGTAAGGCCGATGACAGA
TGGTCGGTATCAGGAGGTGTCATCACAGTCGGATAG
back to top