mRNA_H-paniculata_contig16510.3711.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16510.3711.1
Unique NamemRNA_H-paniculata_contig16510.3711.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A7S0GMZ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMZ6_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.200e-45
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+V
Sbjct:   30 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKEQV 108
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A1V9YCP2_9STRA (DNA repair and recombination protein RAD54 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YCP2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.100e-45
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEV
Sbjct:   49 SKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEV 127
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.420e-44
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV
Sbjct:  588 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 666
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: K0SII4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SII4_THAOC)

HSP 1 Score: 151 bits (382), Expect = 7.090e-42
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+V
Sbjct:  202 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFMATGTVEEKIFQRQLSKEGLQSVVDDKEQV 280
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A397BZT0_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BZT0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.870e-41
Identity = 68/79 (86.08%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCG+NLIG NRLVLFDPDWNPA DKQAAAR+WR+GQKK+CF+YRFV+TGT+EEK+FQRQLSKEGLQ+IVDDKEEV
Sbjct:   36 SKAGGCGINLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIVDDKEEV 114
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.030e-41
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQ+KRC+VYRF+STGTIEEK+FQRQLSKEGLQ++V+D+ EV
Sbjct:  419 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQRKRCYVYRFISTGTIEEKIFQRQLSKEGLQSVVEDQAEV 497
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: B8CBU1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU1_THAPS)

HSP 1 Score: 150 bits (379), Expect = 4.220e-41
Identity = 69/79 (87.34%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDK++V
Sbjct:  434 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKDQV 512
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BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A7S4APF4_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APF4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.090e-40
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+V
Sbjct:  706 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKEQV 784
[Close]
BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A448YY45_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY45_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.090e-40
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+V
Sbjct:  697 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKEQV 775
[Close]
BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Match: A0A1Z5KRM6_FISSO (DNA repair and recombination protein RAD54 and RAD54-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRM6_FISSO)

HSP 1 Score: 151 bits (382), Expect = 1.090e-40
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   28 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQKKRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEV 264
            SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAAR WRDGQKKRCF YRF++TGT+EEK+FQRQLSKEGLQ++VDDKE+V
Sbjct:  635 SKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVVDDKEQV 713
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16510.3711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0GMZ6_9STRA1.200e-4588.61Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A1V9YCP2_9STRA8.100e-4587.34DNA repair and recombination protein RAD54 (Fragme... [more]
A0A6H5KSB9_9PHAE3.420e-44100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K0SII4_THAOC7.090e-4288.61Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A397BZT0_9STRA2.870e-4186.08Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A836CHF7_9STRA3.030e-4188.61SNF2 family N-terminal domain-containing protein n... [more]
B8CBU1_THAPS4.220e-4187.34Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4APF4_9STRA1.090e-4088.61Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A448YY45_9STRA1.090e-4088.61Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5KRM6_FISSO1.090e-4088.61DNA repair and recombination protein RAD54 and RAD... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16510contigH-paniculata_contig16510:5050..5493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.1e-38
Seed eggNOG ortholog2880.D7FYB3
Preferred nameRAD54L
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.3868196-CDS-H-paniculata_contig16510:5049..51491622929315.3868196-CDS-H-paniculata_contig16510:5049..5149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16510 5050..5149 -
1691480812.08547-CDS-H-paniculata_contig16510:5049..51491691480812.08547-CDS-H-paniculata_contig16510:5049..5149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16510 5050..5149 -
1622929315.4005067-CDS-H-paniculata_contig16510:5323..54931622929315.4005067-CDS-H-paniculata_contig16510:5323..5493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16510 5324..5493 -
1691480812.1068306-CDS-H-paniculata_contig16510:5323..54931691480812.1068306-CDS-H-paniculata_contig16510:5323..5493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16510 5324..5493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16510.3711.1prot_H-paniculata_contig16510.3711.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16510 5050..5493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16510.3711.1

>prot_H-paniculata_contig16510.3711.1 ID=prot_H-paniculata_contig16510.3711.1|Name=mRNA_H-paniculata_contig16510.3711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
SPFSCVCFYSKAGGCGLNLIGGNRLVLFDPDWNPAVDKQAAARVWRDGQK
KRCFVYRFVSTGTIEEKVFQRQLSKEGLQNIVDDKEEVRR
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mRNA from alignment at H-paniculata_contig16510:5050..5493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16510.3711.1 ID=mRNA_H-paniculata_contig16510.3711.1|Name=mRNA_H-paniculata_contig16510.3711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig16510:5050..5493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCTTTTTCTTGTGTCTGTTTTTACAGCAAGGCTGGAGGTTGCGGGCT
GAACTTGATCGGGGGCAATCGGCTGGTGCTCTTCGATCCGGATTGGAATC
CAGCCGTGGATAAGCAAGCCGCGGCCCGAGTTTGGAGGGACGGCCAGAAG
AAACGATGCTTCGTATATAGGTGACGTTCATGTGTTGATCTCAAGTAATC
TCTAATTATGTAGGATATTAAGAGTCGTTCCTCACGTTGATGTCTTTTTC
ACTTGTATTTCTTTCCTCTTTTTTTGGTGACTTAACTCTTTACTGAATGT
ATCCATTCGCTGGATAATGACACATGGCTTTGTTGTGCTGGCAGGTTTGT
GTCGACGGGCACGATCGAGGAAAAGGTATTCCAGAGACAGCTATCAAAGG
AAGGGCTGCAGAATATTGTTGATGATAAGGAGGAGGTGAGACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16510:5050..5493-

>mRNA_H-paniculata_contig16510.3711.1 ID=mRNA_H-paniculata_contig16510.3711.1|Name=mRNA_H-paniculata_contig16510.3711.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig16510:5050..5493- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCTTTTTCTTGTGTCTGTTTTTACAGCAAGGCTGGAGGTTGCGGGCT
GAACTTGATCGGGGGCAATCGGCTGGTGCTCTTCGATCCGGATTGGAATC
CAGCCGTGGATAAGCAAGCCGCGGCCCGAGTTTGGAGGGACGGCCAGAAG
AAACGATGCTTCGTATATAGTCACCTTTTTCTTGTGTCTGTTTTTACAGC
AAGGCTGGAGGTTGCGGGCTGAACTTGATCGGGGGCAATCGGCTGGTGCT
CTTCGATCCGGATTGGAATCCAGCCGTGGATAAGCAAGCCGCGGCCCGAG
TTTGGAGGGACGGCCAGAAGAAACGATGCTTCGTATATAGGTTTGTGTCG
ACGGGCACGATCGAGGAAAAGGTATTCCAGAGACAGCTATCAAAGGAAGG
GCTGCAGAATATTGTTGATGATAAGGAGGAGGTGAGACGGGTTTGTGTCG
ACGGGCACGATCGAGGAAAAGGTATTCCAGAGACAGCTATCAAAGGAAGG
GCTGCAGAATATTGTTGATGATAAGGAGGAGGTGAGACGG
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