mRNA_H-paniculata_contig1651.3710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1651.3710.1
Unique NamemRNA_H-paniculata_contig1651.3710.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.850e-28
Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGY 468
            +  FAD+D+A+ +  R S+S G V   G  +SWFSRTQ+     T+EA+YV+L D++ E LFLRQV+ F++    +  I ++ED +GAI +A N  S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L+   FE H N +M++ Y
Sbjct:  100 MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSMDY 255          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5K399_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K399_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.050e-27
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVM-ESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
            +  FAD+D+A  +  R S+SEG V   G  ISW SRTQ+     T+EA+YV+L D++  E LFLR+V  F++    +  I + ED +GAI +A N  S+  ++HI+V+H  IR  V    + I +VES  QH G LT+     +FE H N  M+VG E
Sbjct:    1 MEVFADADYARKAADRRSVSEGLVMWGGGCISWLSRTQKCVTLSTTEAEYVSLADVMKKEVLFLRKVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKGISIFHVESAYQHAGFLTKAFHVGNFEFHRNFAMSVGQE 158          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.270e-27
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
            +  FAD+D+A+ +  R S+S G V      ISWFSRTQ+     T+EA+YV+L D++ E LFLRQV  F++    +  I + ED +GAI +A N  S+  ++H +V+H  I   V   ++ I YVES  QH   LT+ L    FE H N +M+VG E
Sbjct:  139 MEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMSVGQE 295          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L4G0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.450e-26
Identity = 64/157 (40.76%), Postives = 98/157 (62.42%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
            +  FAD+D+A+ +  R  +S G V  +G  ISWFSRTQE     T++A+YV+L+D++ E LFLRQV+ F++    +  I + ED +GAI +A N +S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L+    E H   +M+VG E
Sbjct:  614 MEVFADADYASKAADRRYVSGGLVICAGGCISWFSRTQECVTLSTTKAEYVSLVDVMKEVLFLRQVRRFMLPEAGMPCIPVFEDNQGAIQLAQNPNSNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALNAGDVEFHRIFVMSVGQE 770          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.650e-25
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
            +  F D+D+A+ +  R S+S G V   G  ISWFSRTQ+     T+EA+YV+L D++ E LFLRQV  F++    +  I + ED +GAI +A N  S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L    FE H N +M++
Sbjct:  284 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.490e-25
Identity = 64/154 (41.56%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
            I  FAD+D+A+ +  R S+S G V   G  ISWFSRTQ+     T+EA+YV+L D++ E LFLRQV  F++    +  I + ED +GAI +A N  S+  ++HI+V+H  IR  V   ++ I +VES  Q+   LT+ L    FE H N +M++
Sbjct:  743 IEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDFEFHRNYVMSM 896          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.480e-25
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
            +  F D+D+A+ +  R S+S G V   G  ISWFSRTQ+     T+EA+YV+L D++ E LFLRQV  F++    +  I + ED +GAI +A N  S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L    FE H N +M++
Sbjct:  458 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.670e-25
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
            +  F D+D+A+ +  R S+S G V   G  ISWFSRTQ+     T+EA+YV++ D++ E LFLR+V  F++    +  I + ED + A+ +A N  S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L    FE H N +MNVG E
Sbjct:  975 MEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMNVGQE 1131          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.050e-24
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
            +  F D+D+A+ +  R S+S G V   G  ISWFSRTQ+     T+EA+YV+L D++ E LFLRQV  F++    +  I + ED +GAI +A N  S+  ++HI+V+H  IR  V   ++ I +VES  QH   LT+ L    FE H N +M++
Sbjct:  979 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132          
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.250e-24
Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 1
Query:    1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVG 465
            ++ +AD+D AT +  R S+S G V   G A+SWFSRTQ+     T+EA+YV L D+V E LFLRQ   F++  + +  I I ED +GAI +A N  S+  ++H++V+H ++R  V+  ++ +I+V    Q    LT+ L   +FE H   +MN+ 
Sbjct:  275 LQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVMNLA 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK6_9PHAE1.850e-2841.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K399_9PHAE2.050e-2741.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE9.270e-2741.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G0_9PHAE8.450e-2640.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLN0_9PHAE2.650e-2540.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0C9_9PHAE5.490e-2541.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQB8_9PHAE6.480e-2540.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LC04_9PHAE7.670e-2540.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2R1_9PHAE1.050e-2440.91Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L8D6_9PHAE1.250e-2438.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1651contigH-paniculata_contig1651:15404..15880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog67593.Physo108870
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QIRP@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.3508048-CDS-H-paniculata_contig1651:15403..158801622929315.3508048-CDS-H-paniculata_contig1651:15403..15880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1651 15404..15880 +
1691480812.0666113-CDS-H-paniculata_contig1651:15403..158801691480812.0666113-CDS-H-paniculata_contig1651:15403..15880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1651 15404..15880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1651.3710.1prot_H-paniculata_contig1651.3710.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1651 15404..15880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1651.3710.1

>prot_H-paniculata_contig1651.3710.1 ID=prot_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADY
VTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKR
TRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNA
LMNVGYES*
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mRNA from alignment at H-paniculata_contig1651:15404..15880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1651.3710.1 ID=mRNA_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig1651:15404..15880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGGGCATTCGCAGACTCGGATCACGCTACATGCTCGGACACCAGGCA TTCGATGTCAGAAGGTGGAGTAAATCTGAGCGGGAGCGCGATCAGCTGGT TCTCGCGGACTCAGGAAACTACAGCGGCAGGCACTTCGGAGGCGGATTAC GTGACCCTTTTGGATATCGTTATGGAGTCACTATTTCTCCGCCAGGTGCA GGCGTTCATCATGCTCACTCTGGAGATCTACCCCATTGACATCATGGAGG ACATCGAAGGGGCTATCACGATGGCGAACAACAGGCACTCCAGCAAGAGA ACGAGGCATATCAACGTTAAGCACCGCATCATTCGCGGCTCCGTGGACGA GGGAAAGGTTCGAATCATTTACGTCGAGAGTGGAGACCAACACACGGGCG TGCTCACTAGGCCTCTAGATACGACCTCATTTGAAAAGCATGTTAACGCT TTGATGAATGTTGGGTATGAAAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1651:15404..15880+

>mRNA_H-paniculata_contig1651.3710.1 ID=mRNA_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig1651:15404..15880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGGGCATTCGCAGACTCGGATCACGCTACATGCTCGGACACCAGGCA
TTCGATGTCAGAAGGTGGAGTAAATCTGAGCGGGAGCGCGATCAGCTGGT
TCTCGCGGACTCAGGAAACTACAGCGGCAGGCACTTCGGAGGCGGATTAC
GTGACCCTTTTGGATATCGTTATGGAGTCACTATTTCTCCGCCAGGTGCA
GGCGTTCATCATGCTCACTCTGGAGATCTACCCCATTGACATCATGGAGG
ACATCGAAGGGGCTATCACGATGGCGAACAACAGGCACTCCAGCAAGAGA
ACGAGGCATATCAACGTTAAGCACCGCATCATTCGCGGCTCCGTGGACGA
GGGAAAGGTTCGAATCATTTACGTCGAGAGTGGAGACCAACACACGGGCG
TGCTCACTAGGCCTCTAGATACGACCTCATTTGAAAAGCATGTTAACGCT
TTGATGAATGTTGGGTATGAAAGCTGAATCCGGGCATTCGCAGACTCGGA
TCACGCTACATGCTCGGACACCAGGCATTCGATGTCAGAAGGTGGAGTAA
ATCTGAGCGGGAGCGCGATCAGCTGGTTCTCGCGGACTCAGGAAACTACA
GCGGCAGGCACTTCGGAGGCGGATTACGTGACCCTTTTGGATATCGTTAT
GGAGTCACTATTTCTCCGCCAGGTGCAGGCGTTCATCATGCTCACTCTGG
AGATCTACCCCATTGACATCATGGAGGACATCGAAGGGGCTATCACGATG
GCGAACAACAGGCACTCCAGCAAGAGAACGAGGCATATCAACGTTAAGCA
CCGCATCATTCGCGGCTCCGTGGACGAGGGAAAGGTTCGAATCATTTACG
TCGAGAGTGGAGACCAACACACGGGCGTGCTCACTAGGCCTCTAGATACG
ACCTCATTTGAAAAGCATGTTAACGCTTTGATGAATGTTGGGTATGAAAG
CTGA
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