mRNA_H-paniculata_contig16503.3708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16503.3708.1
Unique NamemRNA_H-paniculata_contig16503.3708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16503.3708.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.620e-8
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    4 WKAMCEKYLNSSMQRRRLLMRQLDSKVMTPNQDPDEYLTQIFHLRDELEYIGETFSEARIMDIILQGLTDGYDQIKFA 237
            WK +  K+  +   RRR L R+L+S  M    DPD ++T ++HL ++L +IG T ++ ++ DIILQGL   Y  I  A
Sbjct:  236 WKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLISGA 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16503.3708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE2.620e-839.74Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16503contigH-paniculata_contig16503:5028..5288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.2532556-UTR-H-paniculata_contig16503:5027..50391622929315.2532556-UTR-H-paniculata_contig16503:5027..5039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16503 5028..5039 +
1691480812.032787-UTR-H-paniculata_contig16503:5027..50391691480812.032787-UTR-H-paniculata_contig16503:5027..5039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16503 5028..5039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.2650487-CDS-H-paniculata_contig16503:5039..52881622929315.2650487-CDS-H-paniculata_contig16503:5039..5288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16503 5040..5288 +
1691480812.0440643-CDS-H-paniculata_contig16503:5039..52881691480812.0440643-CDS-H-paniculata_contig16503:5039..5288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16503 5040..5288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16503.3708.1prot_H-paniculata_contig16503.3708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16503 5040..5288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16503.3708.1

>prot_H-paniculata_contig16503.3708.1 ID=prot_H-paniculata_contig16503.3708.1|Name=mRNA_H-paniculata_contig16503.3708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MCEKYLNSSMQRRRLLMRQLDSKVMTPNQDPDEYLTQIFHLRDELEYIGE
TFSEARIMDIILQGLTDGYDQIKFAVERDPDFS
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mRNA from alignment at H-paniculata_contig16503:5028..5288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16503.3708.1 ID=mRNA_H-paniculata_contig16503.3708.1|Name=mRNA_H-paniculata_contig16503.3708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig16503:5028..5288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGGAAAGCGATGTGCGAGAAATATCTGAACTCGTCCATGCAGCGCCG
CCGTCTACTTATGCGCCAGCTAGACAGCAAGGTGATGACGCCCAATCAAG
ACCCTGATGAGTACCTGACCCAGATATTCCATCTGCGCGACGAGCTCGAG
TACATCGGGGAAACTTTCTCGGAAGCACGCATCATGGATATCATTCTTCA
AGGGCTCACAGACGGTTACGACCAGATCAAATTCGCCGTCGAGAGGGACC
CCGATTTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16503:5028..5288+

>mRNA_H-paniculata_contig16503.3708.1 ID=mRNA_H-paniculata_contig16503.3708.1|Name=mRNA_H-paniculata_contig16503.3708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig16503:5028..5288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGAGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTACTTAT
GCGCCAGCTAGACAGCAAGGTGATGACGCCCAATCAAGACCCTGATGAGT
ACCTGACCCAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGAA
ACTTTCTCGGAAGCACGCATCATGGATATCATTCTTCAAGGGCTCACAGA
CGGTTACGACCAGATCAAATTCGCCGTCGAGAGGGACCCCGATTTTTCCA
TGTGCGAGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTACTTATG
CGCCAGCTAGACAGCAAGGTGATGACGCCCAATCAAGACCCTGATGAGTA
CCTGACCCAGATATTCCATCTGCGCGACGAGCTCGAGTACATCGGGGAAA
CTTTCTCGGAAGCACGCATCATGGATATCATTCTTCAAGGGCTCACAGAC
GGTTACGACCAGATCAAATTCGCCGTCGAGAGGGACCCCGATTTTTCC
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