mRNA_H-paniculata_contig16501.3706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16501.3706.1
Unique NamemRNA_H-paniculata_contig16501.3706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16501.3706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16501contigH-paniculata_contig16501:675..2601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1267
Cds size1266
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.1692913-CDS-H-paniculata_contig16501:674..17481622929315.1692913-CDS-H-paniculata_contig16501:674..1748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 675..1748 -
1691480811.9900951-CDS-H-paniculata_contig16501:674..17481691480811.9900951-CDS-H-paniculata_contig16501:674..1748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 675..1748 -
1622929315.18425-CDS-H-paniculata_contig16501:2409..26011622929315.18425-CDS-H-paniculata_contig16501:2409..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 2410..2601 -
1691480811.9997337-CDS-H-paniculata_contig16501:2409..26011691480811.9997337-CDS-H-paniculata_contig16501:2409..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 2410..2601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16501.3706.1prot_H-paniculata_contig16501.3706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16501 675..2601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16501.3706.1

>prot_H-paniculata_contig16501.3706.1 ID=prot_H-paniculata_contig16501.3706.1|Name=mRNA_H-paniculata_contig16501.3706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=422bp
MGELGEKDNSDGGSEDGGGVYFGAGNKVERDEHGVEEQGLLSRLRSVAQE
ARLEVMDSRLQDLREKQAKNAAGARKATTAAEAAIAAAADAEAAAAVASA
TGTIDTASNTTARRRIEQKRASSLPAAAAAATAGGGGRGSRAGARNPWIR
ATPRVRSRQNGVIQSGGRATRCDSSGATAPAKAAGAGRSGGQWQRTYGVG
GYSQAATAAVGGSPIAALARGGCGAVNGSNNGCCCAPAGGHAGTGGAVGC
LTAQQTNHAGAAPPLPLPPPPNTAGEFYAHCACTALPLHWAATKGGNGDS
PSYYPSPTVITQGTGNHREHAPVLGSLTATRGSVPTTTTTKTPPSLLSSD
ASTQATIGRVPVSGAATVRSQGLARVGRARRQSGGTSSATALSTSTTAMA
AAAAPMSTASTAFPGGRRTGTG
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mRNA from alignment at H-paniculata_contig16501:675..2601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16501.3706.1 ID=mRNA_H-paniculata_contig16501.3706.1|Name=mRNA_H-paniculata_contig16501.3706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1927bp|location=Sequence derived from alignment at H-paniculata_contig16501:675..2601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGAGCTCGGCGAAAAGGACAACAGCGATGGAGGCAGCGAAGATGG
GGGGGGCGTGTATTTTGGCGCGGGGAATAAGGTAGAGCGCGATGAACACG
GCGTCGAGGAGCAGGGGCTTCTGAGCAGGCTGAGGTCCGTGGCGCAAGAG
GCTCGGCTTGAGGTGATGGACAGCCGCTTGCAGGACCTACGCGTGAGTTT
TACTATGCAACGTGAAGGAGGGCCTTGGTGCTTTTTCTTCTTCTTTTTTG
GCCTACATAGATAATGATGGGCACACAACGTTGGGGTTACGGTTAGCGCT
TGGAGGTCTCGGGGCTCTGTATTTTGTGGTAAGATGATGTCCGGGATTGG
GTGTTTCGGTGTCTCCTAAATAACGATTGGTGTAGCATGTAAGTTGGCAT
CGCTCGACAGACCTATGTCGCATTTGGTAGAAGTTCCGTTGTTCCTTGTA
AGCACCATTCGCCACATAACGCCATAAGACGGGACGCGACTCGATTGAAG
AGAAACAAAATGTGATATTCCCGCATGCCATGGGCACGAGATTGGCTTTC
TCCTGTCTCCTGGGTAGCATAGCAAACGGTTCGCGCGCCCCCCTCACCCC
GCTGTCGGTGTACGTGTTTAACGGGAAGCCCAAGACAGGTGAAACGCGAT
GCGTAGGACATACGCTATCGTGTCGATCTTCCAGCCGAAACATAGACGAA
GGGTTAGCTTAAGATACTGCACTTTACTCCCAAGCGTCAACCCTTGCCTG
TGTATTTTGCATTGTCTTCCTCAGCTCTCTCTCCCCTCTCCCGCTTCTCC
CATATCGCACCCCTCTCTCGCCGCTTTCTCCACCTTGCTGTTTTGATCGG
CAGGAGAAACAGGCGAAGAACGCCGCAGGTGCCCGAAAAGCGACGACCGC
AGCAGAGGCAGCGATAGCAGCAGCCGCAGACGCCGAGGCCGCGGCAGCTG
TAGCATCGGCAACAGGCACCATCGACACCGCTAGCAATACAACTGCACGA
CGGCGAATTGAGCAGAAGCGCGCTTCTTCTTTGCCCGCGGCGGCGGCGGC
AGCTACAGCGGGAGGGGGTGGAAGAGGAAGCCGTGCCGGCGCGCGCAATC
CTTGGATCCGAGCAACGCCGCGTGTACGCAGTCGGCAGAACGGGGTTATC
CAATCGGGTGGGCGAGCAACGCGCTGCGACTCCTCCGGAGCGACAGCACC
TGCAAAGGCTGCTGGTGCGGGGAGATCAGGTGGGCAGTGGCAAAGGACCT
ACGGTGTCGGGGGCTACTCGCAGGCGGCGACAGCCGCAGTGGGGGGCTCA
CCAATCGCCGCCTTGGCGCGTGGTGGTTGTGGTGCCGTCAACGGTAGCAA
TAATGGTTGTTGTTGTGCTCCTGCTGGCGGTCATGCTGGCACTGGCGGTG
CCGTTGGCTGCTTGACAGCGCAGCAGACGAACCACGCGGGAGCAGCGCCG
CCGTTGCCACTGCCGCCGCCGCCCAACACCGCTGGAGAATTTTATGCGCA
TTGTGCGTGTACCGCGCTACCTCTTCATTGGGCGGCGACAAAGGGAGGAA
ATGGCGATTCGCCTTCTTATTATCCCAGCCCAACGGTGATTACACAAGGG
ACGGGAAATCACCGCGAACATGCCCCTGTTCTCGGTAGCTTGACAGCGAC
CCGTGGTTCCGTCCCGACGACCACTACGACCAAAACGCCGCCTTCCCTCC
TCTCCTCGGATGCATCGACACAGGCTACCATCGGCCGGGTTCCCGTAAGT
GGGGCCGCTACGGTGAGGTCGCAAGGTTTGGCACGCGTAGGGCGCGCTCG
GCGGCAGTCAGGCGGCACATCTTCCGCCACTGCTCTATCCACGTCCACTA
CAGCGATGGCCGCAGCGGCTGCGCCGATGTCGACGGCGTCCACAGCTTTT
CCCGGCGGCCGGCGGACGGGGACGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16501:675..2601-

>mRNA_H-paniculata_contig16501.3706.1 ID=mRNA_H-paniculata_contig16501.3706.1|Name=mRNA_H-paniculata_contig16501.3706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2532bp|location=Sequence derived from alignment at H-paniculata_contig16501:675..2601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGAGCTCGGCGAAAAGGACAACAGCGATGGAGGCAGCGAAGATGG
GGGGGGCGTGTATTTTGGCGCGGGGAATAAGGTAGAGCGCGATGAACACG
GCGTCGAGGAGCAGGGGCTTCTGAGCAGGCTGAGGTCCGTGGCGCAAGAG
GCTCGGCTTGAGGTGATGGACAGCCGCTTGCAGGACCTACGCATGGGGGA
GCTCGGCGAAAAGGACAACAGCGATGGAGGCAGCGAAGATGGGGGGGGCG
TGTATTTTGGCGCGGGGAATAAGGTAGAGCGCGATGAACACGGCGTCGAG
GAGCAGGGGCTTCTGAGCAGGCTGAGGTCCGTGGCGCAAGAGGCTCGGCT
TGAGGTGATGGACAGCCGCTTGCAGGACCTACGCGAGAAACAGGCGAAGA
ACGCCGCAGGTGCCCGAAAAGCGACGACCGCAGCAGAGGCAGCGATAGCA
GCAGCCGCAGACGCCGAGGCCGCGGCAGCTGTAGCATCGGCAACAGGCAC
CATCGACACCGCTAGCAATACAACTGCACGACGGCGAATTGAGCAGAAGC
GCGCTTCTTCTTTGCCCGCGGCGGCGGCGGCAGCTACAGCGGGAGGGGGT
GGAAGAGGAAGCCGTGCCGGCGCGCGCAATCCTTGGATCCGAGCAACGCC
GCGTGTACGCAGTCGGCAGAACGGGGTTATCCAATCGGGTGGGCGAGCAA
CGCGCTGCGACTCCTCCGGAGCGACAGCACCTGCAAAGGCTGCTGGTGCG
GGGAGATCAGGTGGGCAGTGGCAAAGGACCTACGGTGTCGGGGGCTACTC
GCAGGCGGCGACAGCCGCAGTGGGGGGCTCACCAATCGCCGCCTTGGCGC
GTGGTGGTTGTGGTGCCGTCAACGGTAGCAATAATGGTTGTTGTTGTGCT
CCTGCTGGCGGTCATGCTGGCACTGGCGGTGCCGTTGGCTGCTTGACAGC
GCAGCAGACGAACCACGCGGGAGCAGCGCCGCCGTTGCCACTGCCGCCGC
CGCCCAACACCGCTGGAGAATTTTATGCGCATTGTGCGTGTACCGCGCTA
CCTCTTCATTGGGCGGCGACAAAGGGAGGAAATGGCGATTCGCCTTCTTA
TTATCCCAGCCCAACGGTGATTACACAAGGGACGGGAAATCACCGCGAAC
ATGCCCCTGTTCTCGGTAGCTTGACAGCGACCCGTGGTTCCGTCCCGACG
ACCACTACGACCAAAACGCCGCCTTCCCTCCTCTCCTCGGATGCATCGAC
ACAGGCTACCATCGGCCGGGTTCCCGTAAGTGGGGCCGCTACGGTGAGGT
CGCAAGGTTTGGCACGCGTAGGGCGCGCTCGGCGGCAGTCAGGCGGCACA
TCTTCCGCCACTGCTCTATCCACGTCCACTACAGCGATGGCCGCAGCGGC
TGCGCCGATGTCGACGGCGTCCACAGCTTTTCCCGGCGGCCGGCGGACGG
GGACGGGAGAGAAACAGGCGAAGAACGCCGCAGGTGCCCGAAAAGCGACG
ACCGCAGCAGAGGCAGCGATAGCAGCAGCCGCAGACGCCGAGGCCGCGGC
AGCTGTAGCATCGGCAACAGGCACCATCGACACCGCTAGCAATACAACTG
CACGACGGCGAATTGAGCAGAAGCGCGCTTCTTCTTTGCCCGCGGCGGCG
GCGGCAGCTACAGCGGGAGGGGGTGGAAGAGGAAGCCGTGCCGGCGCGCG
CAATCCTTGGATCCGAGCAACGCCGCGTGTACGCAGTCGGCAGAACGGGG
TTATCCAATCGGGTGGGCGAGCAACGCGCTGCGACTCCTCCGGAGCGACA
GCACCTGCAAAGGCTGCTGGTGCGGGGAGATCAGGTGGGCAGTGGCAAAG
GACCTACGGTGTCGGGGGCTACTCGCAGGCGGCGACAGCCGCAGTGGGGG
GCTCACCAATCGCCGCCTTGGCGCGTGGTGGTTGTGGTGCCGTCAACGGT
AGCAATAATGGTTGTTGTTGTGCTCCTGCTGGCGGTCATGCTGGCACTGG
CGGTGCCGTTGGCTGCTTGACAGCGCAGCAGACGAACCACGCGGGAGCAG
CGCCGCCGTTGCCACTGCCGCCGCCGCCCAACACCGCTGGAGAATTTTAT
GCGCATTGTGCGTGTACCGCGCTACCTCTTCATTGGGCGGCGACAAAGGG
AGGAAATGGCGATTCGCCTTCTTATTATCCCAGCCCAACGGTGATTACAC
AAGGGACGGGAAATCACCGCGAACATGCCCCTGTTCTCGGTAGCTTGACA
GCGACCCGTGGTTCCGTCCCGACGACCACTACGACCAAAACGCCGCCTTC
CCTCCTCTCCTCGGATGCATCGACACAGGCTACCATCGGCCGGGTTCCCG
TAAGTGGGGCCGCTACGGTGAGGTCGCAAGGTTTGGCACGCGTAGGGCGC
GCTCGGCGGCAGTCAGGCGGCACATCTTCCGCCACTGCTCTATCCACGTC
CACTACAGCGATGGCCGCAGCGGCTGCGCCGATGTCGACGGCGTCCACAG
CTTTTCCCGGCGGCCGGCGGACGGGGACGGGA
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