mRNA_H-paniculata_contig16498.3701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16498.3701.1
Unique NamemRNA_H-paniculata_contig16498.3701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 QAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            QA LPV  E+LRYG+S+ GKTVHNED  L  KLKAAA KLN+R+H
Sbjct:  382 QAVLPVNKESLRYGSSNGGKTVHNEDESLAKKLKAAAKKLNLRTH 426
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.000e-10
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 QAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            QA LPV  ETLRYG+SDAG+TVHN+   L  KLKA A KLN+R+H
Sbjct:  146 QAVLPVSSETLRYGSSDAGRTVHNDSENLAKKLKAVAKKLNLRTH 190
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.730e-9
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   10 QAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            QA LPV  E+LRYG+ D GKTVHN+D  L  KLKAAA KLN+ +H
Sbjct:   67 QAVLPVNKESLRYGSDDGGKTVHNDDESLAKKLKAAAKKLNLCTH 111
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: A0A2P6NM88_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NM88_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            ++  A LP+   TLRYG+ DAG+ VH ED EL +K+K A  +LN+  H
Sbjct:  390 VLAMAILPIDRSTLRYGSDDAGRHVHMEDEELNEKMKLAGERLNLAGH 437
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: Q54JI4_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54JI4_DICDI)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            +I  + LP+  +T++YG+SD+G TVHN   +L +K+K A  KLN++SH
Sbjct:  453 LIALSVLPISSDTIKYGSSDSGSTVHNSIPDLNEKMKEAGRKLNLKSH 500
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: L8H9K5_ACACA (Leucine rich repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H9K5_ACACA)

HSP 1 Score: 50.1 bits (118), Expect = 9.400e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            ++ QA LP+G +TL YG+SDAG  V  + RE+E  L AA  +LN+  H
Sbjct:  735 LVAQALLPIGDDTLVYGSSDAGVNVRTDSREIEKALAAACYELNLAKH 782
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: UPI0006447C47 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006447C47)

HSP 1 Score: 47.8 bits (112), Expect = 6.170e-5
Identity = 20/48 (41.67%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            +I  + LP+  ET+RYG+SD+G  VH++ +EL +K+  AA  +N+++H
Sbjct:  353 LIALSLLPINSETIRYGSSDSGTIVHDDIKELSEKMNEAARIINLKAH 400
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: F0ZL85_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZL85_DICPU)

HSP 1 Score: 47.8 bits (112), Expect = 6.170e-5
Identity = 20/48 (41.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            +I  + LP+  ET++YG+SD+G  VH+   +L +K+K A  KLN+++H
Sbjct:  352 LIALSVLPISNETIKYGSSDSGSIVHSNIPDLNEKMKEAGKKLNLKAH 399
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: A0A2P6NZB8_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NZB8_9EUKA)

HSP 1 Score: 47.4 bits (111), Expect = 8.430e-5
Identity = 19/48 (39.58%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            ++    LP+   TL+YG++DAG T+H +D  L +K++ A  +LN+R+H
Sbjct:  515 LLAMPVLPIDKTTLKYGSNDAGATIHADDEVLNEKIEEACRRLNLRAH 562
[Close]
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Match: F4PYX7_CAVFA (Histidine kinase A n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PYX7_CAVFA)

HSP 1 Score: 47.4 bits (111), Expect = 8.450e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH 144
            ++  + LP+  ET+ YG+SD G TVH+ED    +K+K +A  LN++ H
Sbjct:  575 LVAMSLLPINSETIVYGSSDGGITVHSEDPGFNEKMKQSAQALNLKGH 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16498.3701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G5G9_ECTSI1.640e-1068.89Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LF64_ECTSI2.000e-1066.67Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFE7_9PHAE3.730e-964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6NM88_9EUKA1.960e-647.92Clu domain-containing protein n=1 Tax=Planoprotost... [more]
Q54JI4_DICDI1.960e-645.83Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
L8H9K5_ACACA9.400e-647.92Leucine rich repeat domain containing protein n=1 ... [more]
UPI0006447C476.170e-541.67hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZL85_DICPU6.170e-541.67Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A2P6NZB8_9EUKA8.430e-539.58Clu domain-containing protein n=1 Tax=Planoprotost... [more]
F4PYX7_CAVFA8.450e-541.67Histidine kinase A n=1 Tax=Cavenderia fasciculata ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16498contigH-paniculata_contig16498:746..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D7G5G9
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.7167292-CDS-H-paniculata_contig16498:745..8891622929314.7167292-CDS-H-paniculata_contig16498:745..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16498 746..889 +
1691480811.6926768-CDS-H-paniculata_contig16498:745..8891691480811.6926768-CDS-H-paniculata_contig16498:745..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16498 746..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16498.3701.1prot_H-paniculata_contig16498.3701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16498 746..889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16498.3701.1

>prot_H-paniculata_contig16498.3701.1 ID=prot_H-paniculata_contig16498.3701.1|Name=mRNA_H-paniculata_contig16498.3701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
IIQQAQLPVGPETLRYGTSDAGKTVHNEDRELEDKLKAAAVKLNVRSH
back to top

mRNA from alignment at H-paniculata_contig16498:746..889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16498.3701.1 ID=mRNA_H-paniculata_contig16498.3701.1|Name=mRNA_H-paniculata_contig16498.3701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig16498:746..889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCATTCAACAGGCGCAGTTGCCGGTAGGACCTGAGACGCTCAGGTATGG
GACTTCGGATGCAGGCAAGACGGTGCATAACGAAGACCGAGAGCTCGAGG
ATAAGCTCAAAGCGGCGGCGGTTAAGCTCAACGTCCGATCTCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16498:746..889+

>mRNA_H-paniculata_contig16498.3701.1 ID=mRNA_H-paniculata_contig16498.3701.1|Name=mRNA_H-paniculata_contig16498.3701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig16498:746..889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCATTCAACAGGCGCAGTTGCCGGTAGGACCTGAGACGCTCAGGTATGG
GACTTCGGATGCAGGCAAGACGGTGCATAACGAAGACCGAGAGCTCGAGG
ATAAGCTCAAAGCGGCGGCGGTTAAGCTCAACGTCCGATCTCACATCATT
CAACAGGCGCAGTTGCCGGTAGGACCTGAGACGCTCAGGTATGGGACTTC
GGATGCAGGCAAGACGGTGCATAACGAAGACCGAGAGCTCGAGGATAAGC
TCAAAGCGGCGGCGGTTAAGCTCAACGTCCGATCTCAC
back to top