mRNA_H-paniculata_contig16497.3700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16497.3700.1
Unique NamemRNA_H-paniculata_contig16497.3700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16497.3700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16497contigH-paniculata_contig16497:23..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.6539097-CDS-H-paniculata_contig16497:22..2011622929314.6539097-CDS-H-paniculata_contig16497:22..201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16497 23..201 -
1691480811.6650674-CDS-H-paniculata_contig16497:22..2011691480811.6650674-CDS-H-paniculata_contig16497:22..201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16497 23..201 -
1622929314.6692286-CDS-H-paniculata_contig16497:224..3211622929314.6692286-CDS-H-paniculata_contig16497:224..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16497 225..321 -
1691480811.6811192-CDS-H-paniculata_contig16497:224..3211691480811.6811192-CDS-H-paniculata_contig16497:224..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16497 225..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16497.3700.1prot_H-paniculata_contig16497.3700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16497 23..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16497.3700.1

>prot_H-paniculata_contig16497.3700.1 ID=prot_H-paniculata_contig16497.3700.1|Name=mRNA_H-paniculata_contig16497.3700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
GGGSGGGVGPSGGAGAGEGRGNSSGSGSRGECDGNDAGSGAGDLGGGGSG
RTTSRADGGIEYAAGDCERGGTRKTRNTEDTESGDGGGGRER
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mRNA from alignment at H-paniculata_contig16497:23..321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16497.3700.1 ID=mRNA_H-paniculata_contig16497.3700.1|Name=mRNA_H-paniculata_contig16497.3700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=299bp|location=Sequence derived from alignment at H-paniculata_contig16497:23..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGTAGCGGTGGTGGAGTGGGCCCCTCCGGCGGCGCAGGAGCCGG
CGAAGGCCGTGGAAACAGCAGCGGGTCAGGCAGCCGCGGTGAATGCGGTG
AAGTAACGAAACGAACGAAGACGGCAACGACGCCGGTAGCGGCGCCGGCG
ACCTTGGAGGCGGGGGATCAGGAAGAACTACCAGCCGCGCTGATGGTGGA
ATCGAGTATGCCGCTGGCGACTGCGAGAGGGGTGGAACAAGGAAAACACG
GAATACGGAAGACACCGAAAGCGGCGACGGTGGCGGGGGCCGCGAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16497:23..321-

>mRNA_H-paniculata_contig16497.3700.1 ID=mRNA_H-paniculata_contig16497.3700.1|Name=mRNA_H-paniculata_contig16497.3700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig16497:23..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGTAGCGGTGGTGGAGTGGGCCCCTCCGGCGGCGCAGGAGCCGG
CGAAGGCCGTGGAAACAGCAGCGGGTCAGGCAGCCGCGGTGAATGCGGGG
GGAGGTAGCGGTGGTGGAGTGGGCCCCTCCGGCGGCGCAGGAGCCGGCGA
AGGCCGTGGAAACAGCAGCGGGTCAGGCAGCCGCGGTGAATGCGACGGCA
ACGACGCCGGTAGCGGCGCCGGCGACCTTGGAGGCGGGGGATCAGGAAGA
ACTACCAGCCGCGCTGATGGTGGAATCGAGTATGCCGCTGGCGACTGCGA
GAGGGGTGGAACAAGGAAAACACGGAATACGGAAGACACCGAAAGCGGCG
ACGGTGGCGGGGGCCGCGAAAGGACGGCAACGACGCCGGTAGCGGCGCCG
GCGACCTTGGAGGCGGGGGATCAGGAAGAACTACCAGCCGCGCTGATGGT
GGAATCGAGTATGCCGCTGGCGACTGCGAGAGGGGTGGAACAAGGAAAAC
ACGGAATACGGAAGACACCGAAAGCGGCGACGGTGGCGGGGGCCGCGAAA
GG
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