prot_H-paniculata_contig16484.3694.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16484.3694.1
Unique Nameprot_H-paniculata_contig16484.3694.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length128
Homology
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BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 4.400e-48
Identity = 86/128 (67.19%), Postives = 106/128 (82.81%), Query Frame = 0 
Query:    1 QILTFGKELEIMGIQRWEQEAMMLAGSMLGLARLFLLLRFHPRLSLVTDVLASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTMTRTAFGEFDNIYPEMVDINPDAAFLIIATYQ 128
            Q+  F +EL ++ ++RW+++A  +AGS+ GL RLF++LRFHPRLSLVTDVL +S VHLVHFFIMFFMVV VYSN+ W+IFG SS LFATWT +FVTMTR A GEFDNIYP MV+I+  AAF+II TYQ
Sbjct:  206 QVRAFSEELALVALERWKRDAAAVAGSIFGLTRLFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQ 333
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BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Match: A0A7S2WU56_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WU56_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.130e-5
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   28 MLGLARLFLLLRFHPRLSLVTDVLASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTM 97
            ++   RLF    FHPRL  +T  + ++ VHLVH F++ F+++  Y+ +G+I+F  +S  F ++ AA  TM
Sbjct:  245 LISFLRLFKYFEFHPRLGAITRTITTAYVHLVHIFLVLFLLMLGYATIGYIVFAQTSPNFHSFGAALGTM 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16484.3694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2W7_ECTSI4.400e-4867.19Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A7S2WU56_9STRA7.130e-537.14Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 16..108
e-value: 3.8E-10
score: 39.0
NoneNo IPR availablePANTHERPTHR10877:SF183POLYCYSTIC KIDNEY DISEASE 1A-RELATEDcoord: 17..107
NoneNo IPR availablePANTHERPTHR10877POLYCYSTIN-RELATEDcoord: 17..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..80
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..128
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 28..104
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16484contigH-paniculata_contig16484:487..2362 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16484.3694.1mRNA_H-paniculata_contig16484.3694.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16484 487..2362 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16484.3694.1 ID=prot_H-paniculata_contig16484.3694.1|Name=mRNA_H-paniculata_contig16484.3694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
QILTFGKELEIMGIQRWEQEAMMLAGSMLGLARLFLLLRFHPRLSLVTDV
LASSMVHLVHFFIMFFMVVAVYSNVGWIIFGASSDLFATWTAAFVTMTRT
AFGEFDNIYPEMVDINPDAAFLIIATYQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013122PKD1_2_channel